mRNA_H-elongata_contig13553.2514.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13553.2514.1
Unique NamemRNA_H-elongata_contig13553.2514.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A6H5KUL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL2_9PHAE)

HSP 1 Score: 632 bits (1631), Expect = 3.020e-218
Identity = 364/586 (62.12%), Postives = 411/586 (70.14%), Query Frame = 1
Query:   16 DDRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGR---VMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPK------------KKGKPAEPSAALVA-SDASAAKYLMGVPSDVSLARS-----EIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKS-----SGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECVAITKEHSKSRSAGSV 1695
            DD+ S  IVMCVV LGDTARGIFFPTLW YV+AMGGDRI LGY VGAFSFGR   VMISPYFG LSTK+GYR+VLMVASGLI  GALAYA+AW   +LI AQI+MGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPF+GGFLSFL+  R  P++G+FL L  FTAPA  M VAAL L  LL  VF DSIPK K            KK  P   + A +A S  SAAKYLMG PS+VSLARS         ++WPP E      +S    G+FVDS++         ++     +   +  D E+      SG  S+ GYGS+P   E  G     E L  E        C  P+  ++LIYGGFLLNMSTKGTIACFETLGAEYAMTHF  TSAEAGSTFATFG +GV SLLSMR+ICR+ NDVQIVLGGM VMI AC++F+  P G+ GLPLF+W+VFLMYS+GYPIGHTAVLGLFSKVVGAQPQG LLGWFGSAGSLARI FP              +  GVIS+ LGTSKLF  LV  LSIT  +LFAFR  YL+CV ITK+ S SR A + 
Sbjct:  166 DDKASLVIVMCVVFLGDTARGIFFPTLWKYVQAMGGDRITLGYSVGAFSFGRQVAVMISPYFGGLSTKHGYRKVLMVASGLIALGALAYALAWTTAALIGAQIIMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFVGGFLSFLIKDRRIPLLGEFLVLTSFTAPAYVMVVAALLLFTLLKLVFEDSIPKGKSTKTSKQVKASTKKSTPLVKTEAEIAYSSGSAAKYLMGAPSEVSLARSGWMSDSDTDDQWPPAEPGARNGSS--GPGLFVDSDDEDETRRPSTVSATTPKTATAMVQDSEQGLLAAPSGNDSN-GYGSVPAPEEGAGEEGGEEELRRE----ERWWCRTPTASEVLIYGGFLLNMSTKGTIACFETLGAEYAMTHFGMTSAEAGSTFATFGSIGVVSLLSMRLICRYLNDVQIVLGGMGVMIVACLMFVRNPEGASGLPLFLWAVFLMYSVGYPIGHTAVLGLFSKVVGAQPQGALLGWFGSAGSLARIGFP--------------VVAGVISQKLGTSKLFMVLVGTLSITAAILFAFRKRYLDCVEITKQKSLSRQAAAT 730          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: D8LGE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE0_ECTSI)

HSP 1 Score: 619 bits (1597), Expect = 1.370e-215
Identity = 357/578 (61.76%), Postives = 404/578 (69.90%), Query Frame = 1
Query:   43 MCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGR---VMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIP--KPKKKGKPAEPS-----------AALVASDASAAKYLMGVPSDVSLARS-----EIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFS------SAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPC---CSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECVAITKEHSKSRSA 1686
            MCVV LGDTARGIFFPTLW YV+AMGGDRI LGY VGAFS GR   VMISPYFG LSTK+GYR+VLMVASG+I  GALAYA+AW   +LI AQI+MGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPF+GGFLSFL+  R  P++G+FL L  FTAPA  M VAAL L ALL  VF DSIP  KP K  K  + S           A +  S  SAAKYLMG PSDVSLARS         ++WPP E      +S    G+FVDS++      +  ++   T  TP+  +  +   G  +      S GYGS+P   E         G G E           C AP+  ++LIYGGFLLNMSTKGTIACFETLGAEYAMTHF  TSAEAGS FATFG +GV SLLSMR+ICR+ NDVQIVLGGM VMI AC++F+ +P G+ GLPLF+W+VFLMYS+GYPIGHTAVLGLFSKVVGAQPQG LLGWFGSAGSLARI FP              +  GVIS++LGTSKLF  LV  LSIT  +LFAFR  YL+CV ITK  S SR A
Sbjct:    1 MCVVFLGDTARGIFFPTLWKYVQAMGGDRITLGYSVGAFSLGRQVAVMISPYFGGLSTKHGYRKVLMVASGVIALGALAYALAWTTAALIGAQIIMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFVGGFLSFLIKDRRIPLLGEFLVLTSFTAPAYVMIVAALVLFALLKLVFEDSIPNGKPTKTSKQVKVSTKKSTPLVKTEAEMAYSSGSAAKYLMGAPSDVSLARSGWMSDSDTDDQWPPAELGARNGSS--GPGLFVDSDDEDETRRLSAVSATTTP-TPSTAAVRDSELGLLATPSGNNSNGYGSVPAAKEG------AAGEGGEXXXXXXXXRWWCRAPTASEVLIYGGFLLNMSTKGTIACFETLGAEYAMTHFGMTSAEAGSIFATFGSIGVVSLLSMRLICRYLNDVQIVLGGMGVMIVACLMFVRSPEGASGLPLFLWAVFLMYSVGYPIGHTAVLGLFSKVVGAQPQGALLGWFGSAGSLARIGFP--------------VVAGVISQELGTSKLFMVLVGTLSITAAILFAFRRRYLDCVDITKRKSLSRQA 555          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: D8LI50_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI50_ECTSI)

HSP 1 Score: 481 bits (1239), Expect = 3.180e-160
Identity = 293/613 (47.80%), Postives = 380/613 (61.99%), Query Frame = 1
Query:    1 VRASNDDRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARS-------------EIDGEE----WPPVEF------------RTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAG--------------YGSLPTDAENGGGAERIEGLGAEPG-PSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECVAITKEHSKSRSAGSVERTG 1707
            VR + DD+ SFA+V+  VLL DTARGIFFPTLWT+V  +GGD+I LGYCVGAFS GR ++SP FG +ST++GYRR L++++ L+  G L YA+A +  ++ ++Q+ +GVGSGTLGVTR YVADK+T EQRTYLLAYTTAVQYAGFT MP LGGF S+L+GS   P++G FL L QFTAPA F+A  +  L  LL+ VF+D I +     KPA+ +        S+AK L G  S V+L                ++  +E    WP  E+            RT R +  +  G +VD   +S DG      G   D       DG ++    ++AG              + S+  +A++G    R      E G  +R      PS  DMLIYGGFLLN+STKGTI+CFET+GA YA+T F+ TSAEAGS FAT G +GV +LLSMR++C+ FND+Q+VLGGM +MI  C + L  P    GL +F+ +VFLMYS+GYPIGHTAVLGLFSKVVGAQPQG L+GWFGSAG+LAR  FP              +  GV+ +  GTS LF  LVA+LS+T  +LF FR PYL+C+ IT     +  A +    G
Sbjct:   85 VRPTLDDKASFAVVLGDVLLVDTARGIFFPTLWTHVSQLGGDKIALGYCVGAFSLGRTLMSPVFGRMSTEHGYRRALLISTALVSFGTLFYAVADSVFTVFLSQVFLGVGSGTLGVTRGYVADKTTKEQRTYLLAYTTAVQYAGFTVMPSLGGFFSYLLGSTEIPLLGRFLMLTQFTAPAFFVAAMSTVLFLLLWFVFQDGIEQ-----KPAKTT--------SSAKELSGTASGVTLTTDLGSDDSGCLSDDDDVPNQEQQDLWPAAEYSPPGSVSSDSGGRTGRGSPPSVVGQYVD---ISRDGGW----GGSDDKGMEDVEDGYQTGLAAAAAGAAAAGNRAGVQATFHDSVQHEAKHGDVVGRETATLGEGGWLARKLRLRLPSRGDMLIYGGFLLNVSTKGTISCFETIGAAYAITTFSLTSAEAGSVFATCGAIGVVALLSMRLLCKHFNDIQLVLGGMSLMIVTCAM-LALPPTFIGLNVFIAAVFLMYSVGYPIGHTAVLGLFSKVVGAQPQGALMGWFGSAGALARTCFP--------------VLAGVLCQVFGTSALFLFLVALLSVTFALLFTFRRPYLDCIDITNRRKAAVGAANPPSHG 662          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: D7FUX3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX3_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 2.440e-144
Identity = 273/582 (46.91%), Postives = 363/582 (62.37%), Query Frame = 1
Query:   28 SFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARS------------EIDGEE----WPPVEF-------------RTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAG---------YGSLPTDAENGGGAERIEGLGAEPG-PSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECVAI 1656
            S +IV+  +LL DTARGIFFPTLWT+V  +GGD+I LGYCVGAFS GR ++SP FG +ST++GYRR  ++++ LI   +L YA+A +  ++ ++Q+ +G+GSGTLGVTRAYVADK+T EQRTYLLAYTT+VQYAG T MP LGGF S+L+GS   P++G FL L QFTAPA F+A  +  L  LL++VF+D I +     KPA+ S        S+ K L G  S V+L               ++  +E    WP  E              RT R +  +  G +VD+   S DG+    +G   D       +G   +G   SAG         + S   +A++G    R      E G  +R      PS  DMLIYGGFLLN+STKGTI+CFET+GA YA+ +F+ T+AEAGS FA  G +GV +LLSMR++C+ FND+Q+VLGG+ +MI  C + L  P    GL +F+ +VFL+YSIGYPIGHTAVL LFSKVVGAQPQGTL+GWFGSAG+++R  FP              +  GV+ E  GTS LF  L A+LS+T  ++F FR PYL+ + +
Sbjct:   14 SRSIVLGNLLLIDTARGIFFPTLWTHVIQLGGDKIALGYCVGAFSLGRTLLSPVFGRMSTEHGYRRAFLISTVLIPFASLFYAVADSVLTVFLSQLFLGMGSGTLGVTRAYVADKTTKEQRTYLLAYTTSVQYAGLTVMPILGGFFSYLLGSTEIPLLGRFLLLTQFTAPAFFVAAMSTVLFLLLWSVFQDGIEQ-----KPAKTS--------SSGKELSGTASGVTLTTDLGSDDSGGLSDGDVPYQEQQDLWPAAEVSPPGSVSNSSSGGRTGRGSPPSVVGQYVDT---SGDGD----SGGSDDDKGMGHVEGGYQTG-LGSAGNRAGVQAAFHVSAEDEAKHGDVVGRETSTLGEGGWLARNLWLRLPSRGDMLIYGGFLLNVSTKGTISCFETIGAAYAIINFSLTNAEAGSIFAACGAIGVVTLLSMRLLCKHFNDIQLVLGGVSLMIVTCAM-LALPPTFIGLHVFIAAVFLVYSIGYPIGHTAVLALFSKVVGAQPQGTLMGWFGSAGAISRASFP--------------VLAGVLCEVFGTSALFLFLGALLSVTFALVFTFRRPYLDWIEV 559          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A7S2V0P8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P8_9STRA)

HSP 1 Score: 319 bits (818), Expect = 6.950e-99
Identity = 211/526 (40.11%), Postives = 294/526 (55.89%), Query Frame = 1
Query:   28 SFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAGYGSLPTDAENGGGAERIE-GLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLF-LPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILS 1599
            SF ++  +VL+GD ARG+ FPTLW  V+++GGDR   GYCV AFSFGR+  SPYFG LST+ GY+ VL++A  + + G L YA A +   L++ Q +MG G+GTLGVTRAYVAD ++  QRT  +AY TA+QYAGFT  P LG   + L+G  ++   G F  +++F+APA F   AAL    LL   F + IP  +++ K                          S AR+         V  R  R A   S   F  +    S     P+           TS  ++ S    ++  GSL     +      +E GL               S+   ++  GF+ N++TKGTI  +ETLGAE+A+T  +F SA+ G  FA+FG +GV +LLSMR +C  F DV +V  G+ +M+ +CVLF L   +G+ G   F  ++F+MYS+GYPIGHTA++GLFSK+VG +PQG LLGWFGS+GSLARI+FP              +  G ++E  G S+LF GL  +L+
Sbjct:   67 SFCVIAYMVLVGDAARGLMFPTLWPLVESLGGDRSTQGYCVAAFSFGRIFASPYFGQLSTEKGYKDVLLIAIAITVVGCLTYAHATSTWLLMVGQCVMGFGAGTLGVTRAYVADNTSSAQRTTYIAYITALQYAGFTVCPSLGAAFTLLLGDDTYSW-GPF-QVSKFSAPAYFHIGAALLGGLLLQFAFDNYIPTARQRAK--------------------------SRARA---------VSIRNRRSAGSRSVS-FDSARSPRSPTVKSPMVQGSEGLELVATSPQQRDSASSGTSATGSLTITNTS-----LVEDGL---------------SMWKFMLAWGFINNIATKGTIGAYETLGAEFAITALHFDSADTGFIFASFGFLGVLALLSMRYLCERFADVFLVFWGVFLMVVSCVLFYLVHVTGTVG---FSVAIFVMYSVGYPIGHTALIGLFSKIVGNRPQGALLGWFGSSGSLARIIFP--------------LLSGYVAETFGNSELFAGLAIMLA 517          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: D8LI51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI51_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.020e-97
Identity = 216/481 (44.91%), Postives = 276/481 (57.38%), Query Frame = 1
Query:  325 VGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKK---KGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEID-----GEEWPPVEF-------RTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAG---------YGSLPTDAENGGGAERIEGLGAEPG-PSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECVAITKEHSKSRSAGS 1692
            +GSGTL VTRAYVADK+T EQRTYLLAYT + QYAGFT MP LGGF S+L+GS   P++G FL L QFTAPA F+A                 + KP K    GK    +A+ V           G  SD  +   E        E  PP          RT R +  +  G +VD+   S DG+    +G   D       +G   +G   SAG         + S+  +A++G    R      E G  +R      PS  DM IYGGFLLN+STKGTI+CFET+GA YA+T F+ T+AEAGS FA  G +GV +LLSMR++C+ FND+Q+VLGG+ +MI  C + L  P    GL +F+ +VFL+YSIGYPIGHTAVL LFSK+VG QPQGTL+GWFGSAG+++R  FP              +  GV+ E LGTS LF  LVA+LS+ + +LF FR PYL+C+ IT     +  A S
Sbjct:    1 MGSGTLKVTRAYVADKTTKEQRTYLLAYTRSQQYAGFTVMPILGGFFSYLLGSTEIPLLGRFLLLTQFTAPAFFVA----------------ELKKPAKTTSSGKELSGTASGVTPTTDLGSDDSGGLSDGDVPDQEHQDLRPAAEYSPPGSVSSNSSGPRTGRGSPPSVVGQYVDT---SGDGD----SGGSDDDKGMGHVEGGYQTG-LGSAGNRAGVEVTFHDSVQHEAKHGDVVGRETSTLGEGGWLARKLRLRLPSRGDMHIYGGFLLNVSTKGTISCFETIGAAYAITTFSLTNAEAGSIFAACGAIGVVTLLSMRLLCKHFNDIQLVLGGVSLMIVTCAM-LALPPTFIGLHVFIAAVFLVYSIGYPIGHTAVLALFSKMVGTQPQGTLMGWFGSAGAISRASFP--------------VLAGVLCEVLGTSALFLFLVAMLSVPIALLFTFRRPYLDCIEITNRRKAAVGAAS 442          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A7S3UZ09_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ09_HETAK)

HSP 1 Score: 307 bits (786), Expect = 7.710e-95
Identity = 208/536 (38.81%), Postives = 287/536 (53.54%), Query Frame = 1
Query:   19 DRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMI-SACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGA--QPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVL 1617
            D VSF ++  VV +GDTARG+ FPTLW  V  +GG  +  G+ V AFSFGRV+ SP+FG +ST YGY++VL  A+ +++ G   YA A N   LI  Q+++G+GSGTLGVTRAYVAD ST   RT L+AY TA+QY GFT  P +GG LS+L+G R   ++   L+L Q+TAPAL MA  AL   ALL   FRD +P  +                              +LAR        PP     +R A  AS                  +A N  +  PT                                       P P+  P   +  +   ++  G ++N+ TKG++AC+ETLG   A+  F  +  +AG  F++ G +GV +LLSM+ +  + +D+++V  G +VM+ SA +LFL A  G  G   F  +VFLMYS+GYPIGHTAV+G+FSK+VGA  Q QG+LLGWFGSAGSLARI+FP              +  GV+S + G++ +F     +L+ +V VL
Sbjct:   45 DWVSFLVIGFVVFIGDTARGLMFPTLWPLVSKLGGTELTQGFTVAAFSFGRVLSSPHFGKMSTDYGYKKVLTFAACVMIAGCFLYATAQNCYWLIAGQVVIGLGSGTLGVTRAYVADNSTKRSRTVLMAYLTALQYGGFTVTPCVGGLLSYLLGDRELSLLPG-LSLTQYTAPALLMAALALVAIALLAGPFRDYVPAER-----------------------------AALAR--------PP-----SRPALPASS-----------------VADNLVNYKPTT--------------------------------------PLPAAHPEEVSTRLWRSMVAWGLIMNVVTKGSVACYETLGTIVAIGSFGMSKPDAGFLFSSCGFLGVFALLSMKCLTAWADDIKLVFYGCLVMVASATLLFLDARIGLHG---FFAAVFLMYSVGYPIGHTAVIGIFSKIVGARTQQQGSLLGWFGSAGSLARIIFP--------------ILCGVVSSEYGSNTVFSVTGVVLAGSVVVL 465          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A836C8M5_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M5_9STRA)

HSP 1 Score: 294 bits (753), Expect = 2.650e-89
Identity = 206/549 (37.52%), Postives = 273/549 (49.73%), Query Frame = 1
Query:   19 DRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDF-------LALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFL-PAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYL 1641
            D  S A ++ VVL+GDTARGI FPTL +YV  MGG++  LG  V  FS GRV+ SP  G  ST+YG RRVL  A   +  GA+ YA+A +   LI AQ++MG+GSGTLGVTR YVAD++   +RT +LA  TAVQY GF C P LG  L   +G  ++     F       L  +QFTAP   +A A+  +A L++    D+ P    K  P  P            K + G   +      +                A   +YG   D E                                                G A       A+     AP   +    +  I G FLLN++ KG IA +ETLGA YA+   + + A AG  FATFG  GV +LLSM  + R FNDVQ+++GG VVM+ +C L + P   G  G   F+ S+FL YSIGYPIGH+AVLG+FSK+VG + QG L G F SAGS+ARI FP              +  G +++ LG   +F  L  +LS+T+ +L  +R  YL
Sbjct:   52 DYKSLATILTVVLIGDTARGIVFPTLSSYVILMGGNKSTLGAAVAGFSLGRVIASPLLGKWSTQYGCRRVLAAALSALSLGAILYALASSTAWLIAAQVMMGLGSGTLGVTRGYVADRTPNARRTGMLAMLTAVQYGGFACTPLLGAMLCRAIGDGAWGFGHHFALGGWVRLEWSQFTAPGYLLAGASAAVALLVWLCLEDAAPA--AKATPPRPQ--------QQQKAVEGAVGEKMALLHQXXXXXXXXXXXXXXXQA--VAYGDVEDLE------------------------------------------------GAAAAARNHDAQQQNHDAPLTRSA---EAAILGAFLLNVACKGVIATYETLGANYAINTLSLSPASAGLFFATFGAGGVVALLSMGALSRRFNDVQLIVGGAVVMLLSCALLVVPTQGGGLGYAGFVASIFLQYSIGYPIGHSAVLGMFSKIVGKRAQGALQGLFASAGSVARIAFP--------------LAVGTVAQLLGVHVVFALLCVVLSVTIVILLVYRRTYL 523          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A7S1XVC4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVC4_9STRA)

HSP 1 Score: 294 bits (752), Expect = 7.100e-89
Identity = 202/529 (38.19%), Postives = 279/529 (52.74%), Query Frame = 1
Query:   34 AIVMC-VVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSLIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVL 1617
            A+++C VVLLGD+ARGI FPTLW  V+++GGDR V GY VG+FSFGR + SP  G  S K+GY+  L + S +I  G   YA A N   LI  QIL+G+GSG+LGVTRAYVA+ S+P  RT LLAY TAVQY GFTC PF+G  L+++ G      + + + +++F AP  F ++ A++ A LLF  FR             EP+ +L   +A    + +G+P   S           P  + +     +    G  +DSE                         GE+  G F S                                    P +  +L      LN++TKG+IACFETLGA +A   F+ +   AG  FA  G  GV SLL  R +C  F++VQ++LGG++VM+ +C L + +   +  +  F  +V LMY+IGYPIGHTAV+G+FSKV   + QGTLL WFG+AGSLARI+FP              M  G +++ LG S LF  + A L  T+  +
Sbjct:  120 ALIICLVVLLGDSARGIMFPTLWPLVQSLGGDRTVHGYTVGSFSFGRALASPCIGRWSGKHGYKATLGICSLVICLGGFVYATARNLPMLIAGQILIGIGSGSLGVTRAYVAELSSPASRTVLLAYLTAVQYCGFTCTPFIGAILTYIFGGGY--TIANLVEVDKFNAPGYFTSLWAISNAILLFVAFR-------------EPAHSLARIEA----HKLGLPLPES-----------PKKQPKAAAKPASPLEGFDIDSE-------------------------GEE--GCFES----------------------------------EEPVLASLLF-----LNVATKGSIACFETLGAMFAFAVFSMSIPSAGQLFAGCGAAGVVSLLFFRPLCNVFDEVQLILGGILVMVVSC-LTVASLHSTTPIYFFYGAVALMYAIGYPIGHTAVIGVFSKVAEGKSQGTLLSWFGTAGSLARILFP--------------MFSGYVAQTLGFSALFTFIGAFLIATLAAV 537          
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Match: A0A7S1ZB43_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB43_TRICV)

HSP 1 Score: 284 bits (727), Expect = 3.850e-85
Identity = 188/543 (34.62%), Postives = 269/543 (49.54%), Query Frame = 1
Query:   19 DRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCVGAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATS---LIMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLS--FLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRDSIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPPVEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKSSGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLIYGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVASLLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFLMYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLGCACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRN 1632
            D+  F IV  V+L+GD +RG+FFPT+W  V+ +GGD + LGY V AFSFGR+M SP FG+ S  +GY + L+++  ++  G L Y+  +N      LI  Q ++GVGSGTLGVTRA+VAD +    RT  +A+ TAVQYAGFT  PF G F    F+ G R   +      LN FTAPA FMA+       LL   F+      + + K A+ S   +A D            +V+ +R+                      +G+                                                                              V D  I G  LLN++TKG+IA FETLG  +A  HFN ++++AG+  AT G +GV SLL M  + ++ +DVQ+++GGM++MI   +  +   +    +  +M+++FL+YSIGYPIGHTAV+GLFSK+VG +PQGTLLGWF SAGSLAR++FP              +  G +++  G S +F  L  +L++      A  N
Sbjct:  138 DKTGFFIVCLVILIGDMSRGVFFPTMWPLVQHVGGDTVTLGYSVAAFSFGRIMSSPLFGSWSVTHGYTKTLILSVSILAMGTLLYSQVYNVAKPEFLIFGQTILGVGSGTLGVTRAFVADVTPNRNRTTYMAWLTAVQYAGFTVTPFFGAFFYKIFMDGDRE--LRSGIFVLNGFTAPAYFMALICFITLILLVTKFQG-----RNRSKGAKKSKRELAKD------------EVANSRT---------------------LFGLLT----------------------------------------------------------------------------VYDACILGCMLLNVATKGSIASFETLGIAFAEGHFNLSASQAGTIVATCGSIGVVSLLCMGQLAKYLSDVQMIVGGMLIMIIGVLSIVGMEADENSVWRYMFAIFLIYSIGYPIGHTAVIGLFSKIVGRRPQGTLLGWFASAGSLARMMFP--------------IMSGYVADSQGMSAVFLVLTVVLALATIFTLAANN 550          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13553.2514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUL2_9PHAE3.020e-21862.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGE0_ECTSI1.370e-21561.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI50_ECTSI3.180e-16047.80MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUX3_ECTSI2.440e-14446.91MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V0P8_9STRA6.950e-9940.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LI51_ECTSI1.020e-9744.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UZ09_HETAK7.710e-9538.81Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836C8M5_9STRA2.650e-8937.52Major facilitator superfamily domain-containing pr... [more]
A0A7S1XVC4_9STRA7.100e-8938.19Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1ZB43_TRICV3.850e-8534.62Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13553contigH-elongata_contig13553:1825..4826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.3
Seed ortholog evalue3.8e-134
Seed eggNOG ortholog2880.D8LI50
KEGG koko:K12307
KEGG TC2.A.1
KEGG Pathwayko04142,map04142
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2325@1,KOG2325@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor facilitator superfamily
Ec32 orthologEc-16_003690.1
Exons5
Model size1712
Cds size1710
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13553.2514.1prot_H-elongata_contig13553.2514.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13553 1825..4826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.8935828-CDS-H-elongata_contig13553:1824..19941622929804.8935828-CDS-H-elongata_contig13553:1824..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 1825..1994 +
1691679164.1229458-CDS-H-elongata_contig13553:1824..19941691679164.1229458-CDS-H-elongata_contig13553:1824..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 1825..1994 +
1622929804.939848-CDS-H-elongata_contig13553:2423..26661622929804.939848-CDS-H-elongata_contig13553:2423..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 2424..2666 +
1691679164.1325693-CDS-H-elongata_contig13553:2423..26661691679164.1325693-CDS-H-elongata_contig13553:2423..2666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 2424..2666 +
1622929804.9587398-CDS-H-elongata_contig13553:3116..40891622929804.9587398-CDS-H-elongata_contig13553:3116..4089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 3117..4089 +
1691679164.1411726-CDS-H-elongata_contig13553:3116..40891691679164.1411726-CDS-H-elongata_contig13553:3116..4089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 3117..4089 +
1622929804.975704-CDS-H-elongata_contig13553:4367..44661622929804.975704-CDS-H-elongata_contig13553:4367..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 4368..4466 +
1691679164.1498563-CDS-H-elongata_contig13553:4367..44661691679164.1498563-CDS-H-elongata_contig13553:4367..4466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 4368..4466 +
1622929804.9925084-CDS-H-elongata_contig13553:4601..48261622929804.9925084-CDS-H-elongata_contig13553:4601..4826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 4602..4826 +
1691679164.158074-CDS-H-elongata_contig13553:4601..48261691679164.158074-CDS-H-elongata_contig13553:4601..4826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13553 4602..4826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13553.2514.1

>prot_H-elongata_contig13553.2514.1 ID=prot_H-elongata_contig13553.2514.1|Name=mRNA_H-elongata_contig13553.2514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=570bp
VRASNDDRVSFAIVMCVVLLGDTARGIFFPTLWTYVKAMGGDRIVLGYCV
GAFSFGRVMISPYFGNLSTKYGYRRVLMVASGLIMCGALAYAIAWNATSL
IMAQILMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPF
LGGFLSFLMGSRSFPIVGDFLALNQFTAPALFMAVAALTLAALLFAVFRD
SIPKPKKKGKPAEPSAALVASDASAAKYLMGVPSDVSLARSEIDGEEWPP
VEFRTNRDASDASYGMFVDSEELSSDGEMEPIAGNQTDSTPTLTSDGEKS
SGPFSSAGYGSLPTDAENGGGAERIEGLGAEPGPSRAPCCSAPSVPDMLI
YGGFLLNMSTKGTIACFETLGAEYAMTHFNFTSAEAGSTFATFGMVGVAS
LLSMRVICRFFNDVQIVLGGMVVMISACVLFLPAPSGSKGLPLFMWSVFL
MYSIGYPIGHTAVLGLFSKVVGAQPQGTLLGWFGSAGSLARIVFPQPKLG
CACMPARRLMTPGVISEDLGTSKLFYGLVAILSITVGVLFAFRNPYLECV
AITKEHSKSRSAGSVERTG*
back to top

mRNA from alignment at H-elongata_contig13553:1825..4826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13553.2514.1 ID=mRNA_H-elongata_contig13553.2514.1|Name=mRNA_H-elongata_contig13553.2514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3002bp|location=Sequence derived from alignment at H-elongata_contig13553:1825..4826+ (Himanthalia elongata Himel1 dioecious)
GTTCGGGCGTCAAACGATGACAGGGTTTCTTTCGCGATCGTCATGTGCGT CGTTCTCCTCGGAGACACGGCCCGCGGTATATTTTTCCCCACGCTGTGGA CTTACGTGAAGGCGATGGGCGGCGACAGAATCGTCCTGGGTTACTGCGTG GGAGCCTTTAGCTTTGGAAGGCACGTGCAGGGATTCGCGGGGGGGGGGCC TCTTGCGTTCAATCATCCGCCACGTTGGTGTGGAACTTTTATAGTATCTT ACTATATATTTATATTTCAGCACGCTGTATGGGACGCTTCCAGTGAACTA GGGTGGCAGTGGAAGCGCAACGGCCTGCGCCATTGAGGCGGCGCGCGTAC CGAATGGACCTGTTAGCGAGGCGCTCCGCCCACGTCCTCGCTAAGAGCCT CGAAGGGGCGTTGGGAGAGAAAGCCTTGACGGCACAAAACCTTGCTTTGC GTCTCCGGTCGATTCTGTTGAACCCCGGGAGACATGCCCGTCGCGCGTCT CAAGGCGCCAGGCGTTAGGCCAGAGAAAGGGTAAGGCTAAATATAAGTTG ACATTTATTCTCCCGCGCCCCCCTGACGTTCTCTCGTTCTCTTTGCCAGA GTTATGATTTCTCCTTATTTCGGGAACCTGTCGACGAAGTATGGGTACCG CAGGGTGCTCATGGTCGCTAGCGGGCTCATCATGTGCGGCGCCCTGGCCT ACGCGATCGCGTGGAACGCTACCAGCCTCATCATGGCCCAGATCTTGATG GGGGTGGGAAGCGGCACCCTGGGAGTGACGAGGGCGTACGTAGCCGACAA GAGCACCCCTGAGCAGAGAACGTACCTCCTTGCCTACACGACGTAAGGGC GAAGTAGACAATATTTTGCGGATTTGTACGAGTGTACGTGTGCGTATGTC TTTCTCTCCCTCCATAGTAGGATCCAGCCCTTCCTCTCCGCGTCAGACGG TTTCCTTGGATAGCGATAGCGATTGTTCGGTTTATTGTCGATTCATTAGT GGCAAGTGCCAACGAAGACAATCATGCCTACGACGTTTCGAGCATATGGC TTTGCCATCCATATTTAGAGGTCCTAAATACGATTTCAAGCATTCACCGG TGCTCGCGCGCGGTCACCCCATCTGTCCCGTTGTCGGGGGACAGCACGAA AATCACGAAACAAGCAAAACAAAAATGACATAGTGAAGGTCCACGCACGC AACACACTTTCTTTCGCTCACACGCGCGACCCTTTCCTCCCCCGTCTCCT CTTACCACATTGACACTGCGGCTGGACGGTTTTGGATGACAGCGCGGTAC AGTACGCGGGCTTCACGTGCATGCCCTTTCTGGGTGGCTTCCTATCGTTT CTGATGGGGTCCCGCAGCTTCCCCATCGTGGGCGATTTCCTTGCCCTGAA CCAGTTCACGGCCCCTGCGCTTTTTATGGCTGTGGCAGCGTTGACCCTCG CGGCCCTCCTCTTCGCGGTGTTCCGTGACAGCATCCCGAAGCCCAAGAAA AAGGGCAAACCCGCGGAGCCCTCTGCTGCCCTGGTGGCTTCCGATGCTTC CGCCGCCAAGTACTTGATGGGCGTCCCCTCGGATGTGTCCCTCGCCAGAA GCGAAATCGATGGAGAGGAATGGCCTCCCGTGGAGTTCCGAACCAACAGG GATGCGAGCGACGCGTCCTACGGTATGTTCGTGGATTCGGAGGAGCTGAG TTCGGACGGTGAGATGGAGCCCATCGCTGGAAATCAGACCGACTCGACCC CAACGCTCACGAGCGACGGAGAGAAAAGCTCGGGGCCTTTTTCCTCCGCC GGGTACGGCTCACTTCCGACGGACGCAGAGAATGGGGGTGGGGCCGAGCG CATCGAGGGCTTAGGAGCGGAGCCAGGGCCATCTCGGGCGCCTTGCTGTT CTGCGCCTAGCGTTCCCGATATGCTGATCTACGGCGGGTTCCTTCTGAAT ATGAGCACCAAGGGCACGATCGCTTGCTTTGAGACCCTCGGGGCGGAGTA CGCCATGACGCACTTCAATTTCACCAGCGCCGAGGCCGGGTCGACCTTCG CGACCTTCGGGATGGTCGGTGTTGCGTCCCTCCTGTCCATGCGGGTCATT TGTCGCTTCTTCAACGACGTCCAGATCGTCCTTGGTGGCATGGTGGTCAT GATCTCCGCTTGCGTCCTCTTCTTGCCCGCCCCTTCCGGCTCTAAAGGCT TACCCTTGTTTATGTGGTCGGTGTTCCTCATGTACTCCATCGGTTACCCC ATCGGCCACACCGCGGTAATTACCGGCATATATATATCTAATCCGTGCTG GGTTTTCCCGTATAGATCGCCTTGTTCCTTCCGCAAGTGTTGCTCTGCAG CGTTATGGCAGGAGTAGCTGACCTAATATTGCAATCGGTTCTGGTGCTGC AGCGATCGGGAACGAACGGTACTCAGCATCTCGTGGTTGTATATAAACCC ATCTTGCGAAACACGATTCGTGTCCAGCCCCCGAGCTCGATGTGTTCCGG AACCGCGCGCACGTCACCCCGTGTGCGCCTCTTGCGACCACAGGTTCTCG GACTGTTCTCCAAGGTTGTCGGGGCGCAACCTCAGGGGACGCTCTTGGGG TGGTTCGGATCGGCAGGCTCGCTGGCTCGCATCGTGTTCCCTGTCCTTTC CGGCAAGTCCCCGCCCCCGATGATGTTACTTTCTCATGGAACCTTGACGC ATCCCGTTCACACGCCATCGTCCATTTTCACTGTCGTGACTTTGTTTAGT CATGGAACCGCTGTCATCTGACATCAGCAACCAAAACTCGGATGTGCGTG CATGCCTGCCCGTCGATTGATGACCCCAGGCGTGATCTCGGAGGACTTGG GCACGTCGAAGCTCTTTTACGGGCTCGTTGCTATTCTGTCCATCACCGTG GGCGTCCTGTTTGCGTTCAGGAACCCCTACCTGGAGTGCGTTGCGATCAC CAAGGAGCATTCGAAGTCACGGAGCGCTGGTTCTGTCGAGCGGACTGGCT AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13553:1825..4826+

>mRNA_H-elongata_contig13553.2514.1 ID=mRNA_H-elongata_contig13553.2514.1|Name=mRNA_H-elongata_contig13553.2514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3420bp|location=Sequence derived from alignment at H-elongata_contig13553:1825..4826+ (Himanthalia elongata Himel1 dioecious)
GTTCGGGCGTCAAACGATGACAGGGTTTCTTTCGCGATCGTCATGTGCGT
CGTTCTCCTCGGAGACACGGCCCGCGGTATATTTTTCCCCACGCTGTGGA
CTTACGTGAAGGCGATGGGCGGCGACAGAATCGTCCTGGGTTACTGCGTG
GGAGCCTTTAGCTTTGGAAGGTTCGGGCGTCAAACGATGACAGGGTTTCT
TTCGCGATCGTCATGTGCGTCGTTCTCCTCGGAGACACGGCCCGCGGTAT
ATTTTTCCCCACGCTGTGGACTTACGTGAAGGCGATGGGCGGCGACAGAA
TCGTCCTGGGTTACTGCGTGGGAGCCTTTAGCTTTGGAAGAGTTATGATT
TCTCCTTATTTCGGGAACCTGTCGACGAAGTATGGGTACCGCAGGGTGCT
CATGGTCGCTAGCGGGCTCATCATGTGCGGCGCCCTGGCCTACGCGATCG
CGTGGAACGCTACCAGCCTCATCATGGCCCAGATCTTGATGGGGGTGGGA
AGCGGCACCCTGGGAGTGACGAGGGCGTACGTAGCCGACAAGAGCACCCC
TGAGCAGAGAACGTACCTCCTTGCCTACACGACAGTTATGATTTCTCCTT
ATTTCGGGAACCTGTCGACGAAGTATGGGTACCGCAGGGTGCTCATGGTC
GCTAGCGGGCTCATCATGTGCGGCGCCCTGGCCTACGCGATCGCGTGGAA
CGCTACCAGCCTCATCATGGCCCAGATCTTGATGGGGGTGGGAAGCGGCA
CCCTGGGAGTGACGAGGGCGTACGTAGCCGACAAGAGCACCCCTGAGCAG
AGAACGTACCTCCTTGCCTACACGACCGCGGTACAGTACGCGGGCTTCAC
GTGCATGCCCTTTCTGGGTGGCTTCCTATCGTTTCTGATGGGGTCCCGCA
GCTTCCCCATCGTGGGCGATTTCCTTGCCCTGAACCAGTTCACGGCCCCT
GCGCTTTTTATGGCTGTGGCAGCGTTGACCCTCGCGGCCCTCCTCTTCGC
GGTGTTCCGTGACAGCATCCCGAAGCCCAAGAAAAAGGGCAAACCCGCGG
AGCCCTCTGCTGCCCTGGTGGCTTCCGATGCTTCCGCCGCCAAGTACTTG
ATGGGCGTCCCCTCGGATGTGTCCCTCGCCAGAAGCGAAATCGATGGAGA
GGAATGGCCTCCCGTGGAGTTCCGAACCAACAGGGATGCGAGCGACGCGT
CCTACGGTATGTTCGTGGATTCGGAGGAGCTGAGTTCGGACGGTGAGATG
GAGCCCATCGCTGGAAATCAGACCGACTCGACCCCAACGCTCACGAGCGA
CGGAGAGAAAAGCTCGGGGCCTTTTTCCTCCGCCGGGTACGGCTCACTTC
CGACGGACGCAGAGAATGGGGGTGGGGCCGAGCGCATCGAGGGCTTAGGA
GCGGAGCCAGGGCCATCTCGGGCGCCTTGCTGTTCTGCGCCTAGCGTTCC
CGATATGCTGATCTACGGCGGGTTCCTTCTGAATATGAGCACCAAGGGCA
CGATCGCTTGCTTTGAGACCCTCGGGGCGGAGTACGCCATGACGCACTTC
AATTTCACCAGCGCCGAGGCCGGGTCGACCTTCGCGACCTTCGGGATGGT
CGGTGTTGCGTCCCTCCTGTCCATGCGGGTCATTTGTCGCTTCTTCAACG
ACGTCCAGATCGTCCTTGGTGGCATGGTGGTCATGATCTCCGCTTGCGTC
CTCTTCTTGCCCGCCCCTTCCGGCTCTAAAGGCTTACCCTTGTTTATGTG
GTCGGTGTTCCTCATGTACTCCATCGGTTACCCCATCGGCCACACCGCGC
GCGGTACAGTACGCGGGCTTCACGTGCATGCCCTTTCTGGGTGGCTTCCT
ATCGTTTCTGATGGGGTCCCGCAGCTTCCCCATCGTGGGCGATTTCCTTG
CCCTGAACCAGTTCACGGCCCCTGCGCTTTTTATGGCTGTGGCAGCGTTG
ACCCTCGCGGCCCTCCTCTTCGCGGTGTTCCGTGACAGCATCCCGAAGCC
CAAGAAAAAGGGCAAACCCGCGGAGCCCTCTGCTGCCCTGGTGGCTTCCG
ATGCTTCCGCCGCCAAGTACTTGATGGGCGTCCCCTCGGATGTGTCCCTC
GCCAGAAGCGAAATCGATGGAGAGGAATGGCCTCCCGTGGAGTTCCGAAC
CAACAGGGATGCGAGCGACGCGTCCTACGGTATGTTCGTGGATTCGGAGG
AGCTGAGTTCGGACGGTGAGATGGAGCCCATCGCTGGAAATCAGACCGAC
TCGACCCCAACGCTCACGAGCGACGGAGAGAAAAGCTCGGGGCCTTTTTC
CTCCGCCGGGTACGGCTCACTTCCGACGGACGCAGAGAATGGGGGTGGGG
CCGAGCGCATCGAGGGCTTAGGAGCGGAGCCAGGGCCATCTCGGGCGCCT
TGCTGTTCTGCGCCTAGCGTTCCCGATATGCTGATCTACGGCGGGTTCCT
TCTGAATATGAGCACCAAGGGCACGATCGCTTGCTTTGAGACCCTCGGGG
CGGAGTACGCCATGACGCACTTCAATTTCACCAGCGCCGAGGCCGGGTCG
ACCTTCGCGACCTTCGGGATGGTCGGTGTTGCGTCCCTCCTGTCCATGCG
GGTCATTTGTCGCTTCTTCAACGACGTCCAGATCGTCCTTGGTGGCATGG
TGGTCATGATCTCCGCTTGCGTCCTCTTCTTGCCCGCCCCTTCCGGCTCT
AAAGGCTTACCCTTGTTTATGTGGTCGGTGTTCCTCATGTACTCCATCGG
TTACCCCATCGGCCACACCGCGGTTCTCGGACTGTTCTCCAAGGTTGTCG
GGGCGCAACCTCAGGGGACGCTCTTGGGGTGGTTCGGATCGGCAGGCTCG
CTGGCTCGCATCGTGTTCCCTGTTCTCGGACTGTTCTCCAAGGTTGTCGG
GGCGCAACCTCAGGGGACGCTCTTGGGGTGGTTCGGATCGGCAGGCTCGC
TGGCTCGCATCGTGTTCCCTCAACCAAAACTCGGATGTGCGTGCATGCCT
GCCCGTCGATTGATGACCCCAGGCGTGATCTCGGAGGACTTGGGCACGTC
GAAGCTCTTTTACGGGCTCGTTGCTATTCTGTCCATCACCGTGGGCGTCC
TGTTTGCGTTCAGGAACCCCTACCTGGAGTGCGTTGCGATCACCAAGGAG
CATTCGAAGTCACGGAGCGCTGGTTCTGTCGAGCGGACTGGCTAGCAACC
AAAACTCGGATGTGCGTGCATGCCTGCCCGTCGATTGATGACCCCAGGCG
TGATCTCGGAGGACTTGGGCACGTCGAAGCTCTTTTACGGGCTCGTTGCT
ATTCTGTCCATCACCGTGGGCGTCCTGTTTGCGTTCAGGAACCCCTACCT
GGAGTGCGTTGCGATCACCAAGGAGCATTCGAAGTCACGGAGCGCTGGTT
CTGTCGAGCGGACTGGCTAG
back to top