mRNA_H-elongata_contig13552.2512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13552.2512.1
Unique NamemRNA_H-elongata_contig13552.2512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPET 153
            W  R  ++PH+  LARRVLAIPAT A SER+FSCAG IV K RN L P T
Sbjct:  227 WRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTT 276          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.130e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   22 NYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPET 153
            ++PH+  LARRVLAIPAT A SER+FSCAG IV K RN L P T
Sbjct:  153 DFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTT 196          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: R7TXQ1_CAPTE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TXQ1_CAPTE)

HSP 1 Score: 59.7 bits (143), Expect = 9.990e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   16 ERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE 150
            ERN+P +  LA++ LAIPAT APSER+FS AG IV  +R++L+PE
Sbjct:    3 ERNFPRIALLAKKYLAIPATSAPSERVFSTAGNIVTPKRSRLNPE 47          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: T1EL11_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EL11_HELRO)

HSP 1 Score: 58.5 bits (140), Expect = 2.670e-10
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   22 NYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE 150
             +P + K+AR+ LAIPAT APSE++FS +G I+N+RRN+L PE
Sbjct:    4 RFPTIAKVARKYLAIPATSAPSEQIFSMSGQIINERRNRLKPE 46          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 60.1 bits (144), Expect = 4.030e-10
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE 150
            W K +  +PH+  +AR++L IPAT  PSER+FS AG IV K+R  L PE
Sbjct:   72 WRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPE 120          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A0A1WMC4_ZEUCU (Putative AC9 transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WMC4_ZEUCU)

HSP 1 Score: 60.1 bits (144), Expect = 6.390e-10
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPET 153
            W+   + YP + KLA +VLAIPA+ A SER+FS AG I+ ++RN++ P+T
Sbjct:   95 WLNNNKRYPRLSKLAEKVLAIPASSAASERVFSLAGNIITEKRNRIAPKT 144          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.910e-9
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE 150
            W +  R YP++  LA+R+L++PAT APSER+FS A +I  K+R  L P+
Sbjct:   98 WKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPD 146          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A1X7SKZ7_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SKZ7_AMPQE)

HSP 1 Score: 59.3 bits (142), Expect = 2.330e-9
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE 150
            W K E  +P + K+AR+++ +P T  P+ER+FS +GMIVNK R  L PE
Sbjct:  117 WRKNEERFPRLSKIARKLMCVPTTSVPAERVFSTSGMIVNKLRASLKPE 165          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A6I8U4U8_AEDAE (BED-type domain-containing protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A6I8U4U8_AEDAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQL 141
            W K ER +P + K ARR+L IPAT APSER+FSC+G I+  +R+QL
Sbjct:  671 WKKNERVFPCLAKCARRILGIPATSAPSERVFSCSGNIMTSQRHQL 716          
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Match: A0A4U5UIN6_COLLU (Zinc finger BED domain-containing protein 1 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5UIN6_COLLU)

HSP 1 Score: 60.1 bits (144), Expect = 2.740e-9
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    4 WVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDP 147
            W      YPH+ +LARR L+IP T   +ER+FS AGMIVNK+R+ LDP
Sbjct:  242 WKTSGTKYPHLARLARRYLSIPGTSVRAERVFSTAGMIVNKKRSALDP 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13552.2512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.600e-1164.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE4.130e-1168.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
R7TXQ1_CAPTE9.990e-1160.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ca... [more]
T1EL11_HELRO2.670e-1058.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
A0A1X7SR93_AMPQE4.030e-1053.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A0A1WMC4_ZEUCU6.390e-1050.00Putative AC9 transposase n=1 Tax=Zeugodacus cucurb... [more]
A0A7S3PTX0_9STRA1.910e-948.98Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1X7SKZ7_AMPQE2.330e-948.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A6I8U4U8_AEDAE2.380e-958.70BED-type domain-containing protein n=1 Tax=Aedes a... [more]
A0A4U5UIN6_COLLU2.740e-956.25Zinc finger BED domain-containing protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13552contigH-elongata_contig13552:6320..6475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog215358.XP_010742928.1
EggNOG free text desc.Zinc finger BED domain-containing protein 1-like
EggNOG OGs39RW9@33154,3BH13@33208,3D40F@33213,48425@7711,4931H@7742,4A6M4@7898,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.7501469-CDS-H-elongata_contig13552:6319..64751622929804.7501469-CDS-H-elongata_contig13552:6319..6475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13552 6320..6475 -
1691679164.0653734-CDS-H-elongata_contig13552:6319..64751691679164.0653734-CDS-H-elongata_contig13552:6319..6475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13552 6320..6475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13552.2512.1prot_H-elongata_contig13552.2512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13552 6320..6475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13552.2512.1

>prot_H-elongata_contig13552.2512.1 ID=prot_H-elongata_contig13552.2512.1|Name=mRNA_H-elongata_contig13552.2512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MWVKRERNYPHVDKLARRVLAIPATMAPSERMFSCAGMIVNKRRNQLDPE
T*
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mRNA from alignment at H-elongata_contig13552:6320..6475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13552.2512.1 ID=mRNA_H-elongata_contig13552.2512.1|Name=mRNA_H-elongata_contig13552.2512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig13552:6320..6475- (Himanthalia elongata Himel1 dioecious)
ATGTGGGTCAAAAGGGAGCGTAACTACCCCCACGTAGACAAGCTCGCTAG AAGGGTACTAGCTATTCCGGCCACAATGGCGCCATCCGAGCGCATGTTTT CCTGCGCGGGGATGATAGTCAATAAGCGACGTAACCAGTTGGACCCGGAA ACCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13552:6320..6475-

>mRNA_H-elongata_contig13552.2512.1 ID=mRNA_H-elongata_contig13552.2512.1|Name=mRNA_H-elongata_contig13552.2512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig13552:6320..6475- (Himanthalia elongata Himel1 dioecious)
ATGTGGGTCAAAAGGGAGCGTAACTACCCCCACGTAGACAAGCTCGCTAG
AAGGGTACTAGCTATTCCGGCCACAATGGCGCCATCCGAGCGCATGTTTT
CCTGCGCGGGGATGATAGTCAATAAGCGACGTAACCAGTTGGACCCGGAA
ACCTAGATGTGGGTCAAAAGGGAGCGTAACTACCCCCACGTAGACAAGCT
CGCTAGAAGGGTACTAGCTATTCCGGCCACAATGGCGCCATCCGAGCGCA
TGTTTTCCTGCGCGGGGATGATAGTCAATAAGCGACGTAACCAGTTGGAC
CCGGAAACCTAG
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