mRNA_H-elongata_contig13549.2510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13549.2510.1
Unique NamemRNA_H-elongata_contig13549.2510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: D7G2C3_ECTSI (Putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.510e-17
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RCLEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLINSSVEGG-YKEYHS 159
            RCLE+FY+AY++L++  Y NV AWR R+EARPATAKGL+INS  + G +KEYHS
Sbjct:  236 RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQNGAFKEYHS 289
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: B0TSY7_SHEHH (Glutathione S-transferase domain n=1 Tax=Shewanella halifaxensis (strain HAW-EB4) TaxID=458817 RepID=B0TSY7_SHEHH)

HSP 1 Score: 53.1 bits (126), Expect = 6.520e-7
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    7 LEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLINSSVEGG 141
            L++FYKA + L+LG+YKNV+AW  R  +RPAT KGL +    E G
Sbjct:  176 LDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIG 220
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: A0A176VKM0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VKM0_MARPO)

HSP 1 Score: 49.3 bits (116), Expect = 2.080e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    4 CLEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLI 120
            CL+  Y A E L + N+ NVVAW+ R  ARPATAKGL +
Sbjct:  226 CLDFGYHAAEYLGVSNFPNVVAWKERCMARPATAKGLTV 264
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: A0A1H7FDP0_9RHOB (GST-like protein n=1 Tax=Jannaschia helgolandensis TaxID=188906 RepID=A0A1H7FDP0_9RHOB)

HSP 1 Score: 48.1 bits (113), Expect = 5.450e-5
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   19 YKAYESLDLGNYKNVVAWRARLEARPATAKGLLINSS 129
            Y A E LD+ +Y+NVVAW  +++ARPAT +G ++N S
Sbjct:  217 YDAAEFLDVASYRNVVAWAEKIDARPATRRGRMVNRS 253
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: A0A1I3MGK6_9RHOB (GST-like protein n=1 Tax=Jannaschia pohangensis TaxID=390807 RepID=A0A1I3MGK6_9RHOB)

HSP 1 Score: 48.1 bits (113), Expect = 5.460e-5
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   19 YKAYESLDLGNYKNVVAWRARLEARPATAKGLLIN 123
            Y A E LD+ +YKNVVAW  +++ARPAT +G ++N
Sbjct:  217 YDAAEFLDVASYKNVVAWAEKIDARPATRRGRMVN 251
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: UPI0018F113E7 (glutathione S-transferase N-terminal domain-containing protein n=1 Tax=Marinomonas sp. C1424 TaxID=2795388 RepID=UPI0018F113E7)

HSP 1 Score: 47.8 bits (112), Expect = 6.610e-5
Identity = 17/39 (43.59%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 CLEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLI 120
            C+++FY A ++L LG +K+V+AWR+R+ +RPA  +G+ +
Sbjct:  189 CVDIFYGARDTLALGEFKHVMAWRSRVTSRPAYQRGIKV 227
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BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Match: A0A2G1Z599_9PROT (Glutathione S-transferase n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2G1Z599_9PROT)

HSP 1 Score: 47.8 bits (112), Expect = 6.640e-5
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 RCLEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLINSS 129
            R L  FY+A E L++  ++  +AW AR E+RPATA+GL + S+
Sbjct:  188 RVLSGFYEAGEFLNVAEFEKTIAWAARCESRPATARGLTVGSA 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13549.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G2C3_ECTSI1.510e-1764.81Putative Glutathione S-transferase n=1 Tax=Ectocar... [more]
B0TSY7_SHEHH6.520e-753.33Glutathione S-transferase domain n=1 Tax=Shewanell... [more]
A0A176VKM0_MARPO2.080e-556.41Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A1H7FDP0_9RHOB5.450e-551.35GST-like protein n=1 Tax=Jannaschia helgolandensis... [more]
A0A1I3MGK6_9RHOB5.460e-554.29GST-like protein n=1 Tax=Jannaschia pohangensis Ta... [more]
UPI0018F113E76.610e-543.59glutathione S-transferase N-terminal domain-contai... [more]
A0A2G1Z599_9PROT6.640e-546.51Glutathione S-transferase n=1 Tax=Sneathiella sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13549contigH-elongata_contig13549:6144..6305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.6427577-CDS-H-elongata_contig13549:6143..63051622929804.6427577-CDS-H-elongata_contig13549:6143..6305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13549 6144..6305 -
1691679164.0327377-CDS-H-elongata_contig13549:6143..63051691679164.0327377-CDS-H-elongata_contig13549:6143..6305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13549 6144..6305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13549.2510.1prot_H-elongata_contig13549.2510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13549 6144..6305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13549.2510.1

>prot_H-elongata_contig13549.2510.1 ID=prot_H-elongata_contig13549.2510.1|Name=mRNA_H-elongata_contig13549.2510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RCLEVFYKAYESLDLGNYKNVVAWRARLEARPATAKGLLINSSVEGGYKE
YHS*
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mRNA from alignment at H-elongata_contig13549:6144..6305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13549.2510.1 ID=mRNA_H-elongata_contig13549.2510.1|Name=mRNA_H-elongata_contig13549.2510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig13549:6144..6305- (Himanthalia elongata Himel1 dioecious)
AGGTGCTTGGAAGTGTTCTACAAGGCTTACGAAAGTCTGGATCTTGGAAA
TTACAAGAACGTGGTTGCCTGGCGTGCTAGGCTCGAGGCCCGGCCAGCGA
CGGCAAAGGGTCTTCTCATCAACTCCAGCGTAGAAGGCGGGTACAAGGAA
TACCACAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig13549:6144..6305-

>mRNA_H-elongata_contig13549.2510.1 ID=mRNA_H-elongata_contig13549.2510.1|Name=mRNA_H-elongata_contig13549.2510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig13549:6144..6305- (Himanthalia elongata Himel1 dioecious)
AGGTGCTTGGAAGTGTTCTACAAGGCTTACGAAAGTCTGGATCTTGGAAA
TTACAAGAACGTGGTTGCCTGGCGTGCTAGGCTCGAGGCCCGGCCAGCGA
CGGCAAAGGGTCTTCTCATCAACTCCAGCGTAGAAGGCGGGTACAAGGAA
TACCACAGCTGAAGGTGCTTGGAAGTGTTCTACAAGGCTTACGAAAGTCT
GGATCTTGGAAATTACAAGAACGTGGTTGCCTGGCGTGCTAGGCTCGAGG
CCCGGCCAGCGACGGCAAAGGGTCTTCTCATCAACTCCAGCGTAGAAGGC
GGGTACAAGGAATACCACAGCTGA
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