mRNA_H-elongata_contig13539.2504.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: D7G6U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U7_ECTSI) HSP 1 Score: 251 bits (641), Expect = 6.850e-73 Identity = 131/242 (54.13%), Postives = 172/242 (71.07%), Query Frame = 1
Query: 7 SKTVQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGSVGTDEIDADSSLIVIHSTTEQ-TGNGPSVILEGGLADVSVALAKLTYTS 729
SKT+Q+IV A+ND P + G + AEEDT + V G++V+DPDCDD PRG++E+ + ASNGT+Q GSVA LYLMEA G+LK+RGKTGPVNAALAGL Y G AE+SG D +V T DDLG+SG G L +S+S+++ V+ NDPPLI P EL++ GGVLF +ED+ +PLG FGV+D D+ F+R +S G+VG I+ + ++ + ST E T G SV EG +VS AL LTYTS
Sbjct: 986 SKTIQIIVDAINDGPSLTGPLAIEAEEDTSITVNGVAVQDPDCDDAPRGVLEITVAASNGTVQFIGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDKIVVTADDLGHSGTGSQLSASWSIDVLVSASNDPPLIQAPPELDLIVGGVLFVVEDESSPLGVFGVSDIDDPFLRVTVSARVGNVGYGGIE-EVGMVAVASTDETPTATGSSVSFEGTADEVSDALGSLTYTS 1226
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: A0A6H5KBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW5_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.510e-71 Identity = 126/241 (52.28%), Postives = 165/241 (68.46%), Query Frame = 1
Query: 7 SKTVQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGPSVILEGGLADVSVALAKLTYTS 729
+KT+++IV A+ND P + G + EEDTP+ V G++V+DPDCDD PRG++E+ + ASNGT+Q GSVA LYLMEA G+LK+RGKTGPVNAALAGL Y G AE+SG D +V T DDLG+SG G L +S+S+ + V+ NDPPLI P EL++ GGVLF +ED+ +PLG FGV+D D+ F+R +S G+VG I+ + V G SV EG +VS AL LTYTS
Sbjct: 1010 TKTIEIIVDAINDGPSLIGPLAIEVEEDTPITVNGVAVQDPDCDDAPRGVLEITVAASNGTVQFIGSVAGLYLMEALPGSLKVRGKTGPVNAALAGLSYEGVAEFSGTDRIVVTADDLGHSGTGSQLSASWSIEVLVSASNDPPLIQAPPELDLIAGGVLFVVEDESSPLGVFGVSDMDDPFLRVTVSARVGNVGYGGIEEVGMVAVASRDETPPATGSSVSFEGTADEVSDALGSLTYTS 1250
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: UPI0019BDBD8B (Pre-peptidase C-terminal domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019BDBD8B) HSP 1 Score: 98.2 bits (243), Expect = 1.150e-19 Identity = 75/241 (31.12%), Postives = 115/241 (47.72%), Query Frame = 1
Query: 10 KTVQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVA-SLYLMEAPSGNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEF--VRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGPSVILEGGLADVSVALAKLTY 723
+T + V AVND PI N + EDT +A+ GIS+ D D +P + ++ +GTLQLG + ++ S ++ G +NAAL+GL Y G ++G DTL T +D G +G G S + ITVAPVND P+I+ P + ED L V D D+ + I+S+ G++ D + A SS + + +T + ++ A+A LTY
Sbjct: 1884 QTFTINVTAVNDAPIFTLPNPPSVSEDTTLAIAGISLADVDSGSSPLVVA---LSVVSGTLQLGNTAGLTITAGSNNSSSVAFSGNLNDINAALSGLSYRGNLNFNGADTLTLTANDQGATGAGAIGIDSRVLGITVAPVNDAPVITIPGSQTVD--------EDTNLLLSGISVTDADSNPNPITVIVSSTNGTLTLDPLVAGSSTLTLTNTLDA---------------INTAIANLTY 2098
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: UPI001CC9CAF3 (cadherin-like domain-containing protein n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CC9CAF3) HSP 1 Score: 95.1 bits (235), Expect = 1.250e-18 Identity = 71/244 (29.10%), Postives = 112/244 (45.90%), Query Frame = 1
Query: 7 SKTVQVIVGAVNDRPIIN-GLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGNLKIR--GKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEF--VRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGPSVILEGGLADVSVALAKLTY 723
S T + V ND+P++ L A++ A+ GI++ DPD G V + ++A+NG L +G ++ + + +R G VN AL L Y + + G DT+ V+D GN+GVGG L S S+++ V P+N PPLI+ P A ED + ++D D V ++ + G V + + S + ++ T Q N V G LA V+ L L Y
Sbjct: 590 SNTFDIAVTPANDQPVLTLPTGTLTADQGANAAISGITISDPD---VANGSVTVTLSAANGLLSVGLKTGLTFIQGTGTQDATMRFSGTLSTVNTALTSLIYRSNSTFKGTDTIAINVNDNGNTGVGGPLSDSKSLDVVVTPINKPPLITLPASP--------IANEDTNLTISGISISDIDGNGGPVTVSLTAVHGVVS---LSSTSGITLVTGTGSQDRN---VTFTGTLASVNAVLNNLVY 816
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: UPI001BAEFBC7 (Ig-like domain-containing protein n=1 Tax=Acaryochloris marina TaxID=155978 RepID=UPI001BAEFBC7) HSP 1 Score: 95.1 bits (235), Expect = 1.360e-18 Identity = 64/193 (33.16%), Postives = 95/193 (49.22%), Query Frame = 1
Query: 7 SKTVQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPS---GNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTI 576
++TV + V VND P++ A +E+T + V GIS+ D D D G +E+ ++A+NG + L + L + L RG +N AL+ L Y G A Y+G DTL V+DLGN+G GGAL S ++NI VA N P+ + L + A + TPL D D + + + I
Sbjct: 852 TQTVDIAVTPVNDAPLLTVPGAQAVDENTDLVVSGISINDVDVD---SGELEVTLSATNGVMSLS-QITGLAFTQGDGITDSTLIFRGTLSDINQALSNLIYRGNANYNGFDTLSIAVNDLGNTGEGGALTDSTTINIAVAATNSAPVADPDKTLTV-------AEDSGATPLAINAPTDSDGDVLTVTVDEI 1033
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: A0A7Y7CTW5_9GAMM (Tandem-95 repeat protein (Fragment) n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A7Y7CTW5_9GAMM) HSP 1 Score: 94.4 bits (233), Expect = 2.510e-18 Identity = 79/243 (32.51%), Postives = 120/243 (49.38%), Query Frame = 1
Query: 16 VQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGI----SVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGN--LKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGPS-VILEGGLADVSVALAKLTY 723
V++ V VND P+I + EDT V G S+ D D ++E+ + A NG L LG S+ +L ++ G + +RG +++A GL Y A ++G DTL +DDLGNSG GGAL S +ITV+ VND P++S P +++++ ED L GT + V STI ++ + D +L + Q+GNG S V + G A + A+ L+Y
Sbjct: 4391 VRIYVTGVNDAPVITFTGSPSTSEDT-VLTYGSGETQSITIADIDAGASDLLEMTVRADNGALTLG-SMTNLSVVGGADGTSLVTVRGTLTDLDSAFDGLVYTPDANFNGTDTLTVKLDDLGNSGSGGALSHEVSQSITVSAVNDAPVLSVPSDISVN--------EDSLIYFGTNETQQIIFDDVDVTASTIM-TLQLSASNGDITLGSVAGLASQSGNGTSSVTVTGTQAVLRSAIEGLSY 4622
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: A0A844MYE7_9CYAN (DUF4347 domain-containing protein n=1 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844MYE7_9CYAN) HSP 1 Score: 94.0 bits (232), Expect = 3.320e-18 Identity = 75/253 (29.64%), Postives = 127/253 (50.20%), Query Frame = 1
Query: 4 VSKTVQVIVGAVNDRPIINGLNL-LAAEEDTPVAVVG---ISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGN--LKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGA------LRSSFSVNITVAPVNDPPLISTPRELNISGGG-VLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGPSVILEGGLADVSVALAKLTY 723
++ +V + V ++ND P+ N LN L EDTP+ G IS+ D D + P VE+++TA+NGT+ L S L + +G+ + G +N ALAG+ + E SG ++ DLGNSG+ L ++ ++NI + VNDPP+ P +L ++F+ E+ ++DPD I T + GT + + L + + ++ N ++IL G +AD++ ALA +T+
Sbjct: 2106 ITNSVSIDVQSINDAPVNNVLNKELTTLEDTPIVFSGNNLISISDIDAGNQP---VEVILTATNGTIALS-STKELQFTQGSNGSNGMMFTGTIANINTALAGMTFNPTPEASGSASIKIRTSDLGNSGIPNTPDDEEVLTATDTININIQSVNDPPINQVPGKLTTDEDKPIVFSKENG----NLISISDPDAG-ANPIQVTFVVTNGTLSLSGTTGLNIWNGNSDGLNNA-TMILSGTIADINTALAGMTF 2348
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: A0A537MBV0_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MBV0_9PROT) HSP 1 Score: 93.6 bits (231), Expect = 3.670e-18 Identity = 67/196 (34.18%), Postives = 94/196 (47.96%), Query Frame = 1
Query: 16 VQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTL---QLGGSVASLYLMEAPSGNLKIRGKTGPVNAALA---GLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGS 585
V V VGAVND P+ +AA ED PVA+ G+SV D D + + I L GT + G + + + SG++ + G +NA LA G+ Y AA+Y+G DTL T D G+ G GGAL S +V IT+AP ND P G + ED + G +D D + + + FG+
Sbjct: 523 VVVTVGAVNDAPVNVVGGAVAASEDVPVAITGLSVSDVDANPSADVISVTLSVGHGGTTVRTDVVGGLTAADISGNGSGSVVLSGTQNAINATLAAANGVVYASAADYNGSDTLTMTTSDNGHGGSGGALGDSDTVAITIAPTNDAP--------TAPASGSVSTNEDTPSAATAIGASDVDGDTLSYSVKPGFGA 710
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: T0QLQ2_SAPDV (Cadherin domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QLQ2_SAPDV) HSP 1 Score: 92.8 bits (229), Expect = 8.520e-18 Identity = 71/233 (30.47%), Postives = 110/233 (47.21%), Query Frame = 1
Query: 73 LAAEEDTPVAVVGISVEDPDCDDTPRGIVELLITASNGTLQLGGSVASLYLMEAPSGNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPP--------LISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEFVRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNG------PSVILEGGLADVSVALAKLTYTS 729
+A +EDTP + G+ V D D DT V++ + +G QL S A L ++E G L ++G +N AL Y+GA Y GQD++V T +DLGN+G GG ++S ++ + + V DPP L STP + + G L + + V D D R + +I +VG + + L H T T +G + + G + D++ AL L Y S
Sbjct: 5484 IAIDEDTPYTLHGLVVTDDDAADTFGSEVQVTLACEHGHFQLDTSTAGLDILEEEPGLLHVQGPLELINYALQRATYVGALNYFGQDSIVVTANDLGNTGTGGPQQASATMAVVITSVCDPPTWASTPPALFSTPEDTPLLLSGALRLQDVDAS------VMDVD----RVLTLSISVAVGGVLLATHAGL---HVTASSTNDGVGHLYYSTATIAGTVDDLNAALRGLMYLS 5703
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Match: UPI001CA75A4E (Ig-like domain-containing protein n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA75A4E) HSP 1 Score: 92.4 bits (228), Expect = 1.110e-17 Identity = 80/249 (32.13%), Postives = 118/249 (47.39%), Query Frame = 1
Query: 7 SKTVQVIVGAVNDRPIINGLN-LLAAEEDTPVAVVGISVEDPDCDDT----PRGIVELLITASNGTLQLGGSVASLYLMEAPSGNLKIRGKTGPVNAALAGLEYIGAAEYSGQDTLVFTVDDLGNSGVGGALRSSFSVNITVAPVNDPPLISTPRELNISGGGVLFAMEDQLTPLGTFGVADPDNEF----VRTIISTIFGSVGTDEIDADSSLIVIHSTTEQTGNGP-SVILEGGLADVSVALAKLTY 723
++T+ V + AVND P++ +N + EDTP+ + GISV D D + +++ + A+ GT + G+ SL L I G VNAAL L Y G +Y G D + TV+DLGN+G+GGAL + +++I V PVNDPP L G V A + L G + D + VR +S G++ ++ TT NG S EG + ++ ALA L Y
Sbjct: 1795 TQTLTVNINAVNDAPVLTLVNSTITGAEDTPILLSGISVTDVDAGTSNIQVTVSVLQGTLNATPGTTTVTGAGTSL---------LTITGAQNAVNAALNTLTYQGNLDYFGPDEAIVTVNDLGNTGIGGALTDTRTLSINVTPVNDPPTF-----LAFPTGPVPVAEDTNLIFTGGRAIVVTDVDSGPNPVRLTLSVNNGTL---------TMNTSGLTTIAGANGSQSATYEGTINAITTALASLVY 2020 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13539.2504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13539.2504.1 >prot_H-elongata_contig13539.2504.1 ID=prot_H-elongata_contig13539.2504.1|Name=mRNA_H-elongata_contig13539.2504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp IVSKTVQVIVGAVNDRPIINGLNLLAAEEDTPVAVVGISVEDPDCDDTPRback to top mRNA from alignment at H-elongata_contig13539:7070..7798+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13539.2504.1 ID=mRNA_H-elongata_contig13539.2504.1|Name=mRNA_H-elongata_contig13539.2504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=729bp|location=Sequence derived from alignment at H-elongata_contig13539:7070..7798+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13539:7070..7798+ >mRNA_H-elongata_contig13539.2504.1 ID=mRNA_H-elongata_contig13539.2504.1|Name=mRNA_H-elongata_contig13539.2504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig13539:7070..7798+ (Himanthalia elongata Himel1 dioecious)back to top |