mRNA_H-elongata_contig135386.2502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135386.2502.1
Unique NamemRNA_H-elongata_contig135386.2502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A6H5L5K7_9PHAE (V-type proton ATPase subunit a n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K7_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.760e-57
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEK ML+TI+M NAFAIFIGFA+FA VTFGVILCMDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  169 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKTMLTTIQMGNAFAIFIGFAMFAGVTFGVILCMDVLECFLHALRLHWVEFQTKFYKADG 265
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A662XFK0_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFK0_9STRA)

HSP 1 Score: 172 bits (436), Expect = 8.160e-54
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAH+ELA VFWEKAMLSTI  ++  AIFIGFA+FAA TFGVIL MDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:    7 QAIETIEFVLGMVSNTASYLRLWALSLAHSELATVFWEKAMLSTINSDSFIAIFIGFAVFAATTFGVILSMDVLECFLHALRLHWVEFQNKFYKADG 103
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A7S2V5Q6_9STRA (V-type proton ATPase subunit a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5Q6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.900e-53
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAH ELA VFWEKA+LSTIEM NA  IF+G+AI+A VTF V+LCMDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:   77 QAIETIEFVLGMVSNTASYLRLWALSLAHAELATVFWEKALLSTIEMKNAGFIFVGYAIWAMVTFAVLLCMDVLECFLHALRLHWVEFQNKFYKADG 173
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: D7FPY6_ECTSI (V-type proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.350e-52
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEK ML+TI+M NAFAIFIGFA+FA VTFGVILCMDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  861 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKTMLTTIQMGNAFAIFIGFAMFAGVTFGVILCMDVLECFLHALRLHWVEFQTKFYKADG 957
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A7S2FQ72_9STRA (V-type proton ATPase subunit a n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FQ72_9STRA)

HSP 1 Score: 176 bits (446), Expect = 7.150e-52
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAH+ELA VFWEKAMLSTIEM N  AIF+G+++FA VTF V+LCMDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  291 QAIETIEFVLGMVSNTASYLRLWALSLAHSELATVFWEKAMLSTIEMGNPVAIFVGYSVFAGVTFAVLLCMDVLECFLHALRLHWVEFQNKFYKADG 387
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A2P4WWC9_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWC9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.890e-51
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            Q IETIEFVLGMVSNTASYLRLWALSLAH+ELA VFWEK MLSTI  ++  AIFIGFA+FAA TFGVIL MDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  103 QGIETIEFVLGMVSNTASYLRLWALSLAHSELATVFWEKTMLSTINSDSFIAIFIGFAVFAATTFGVILAMDVLECFLHALRLHWVEFQNKFYKADG 199
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A835ZAQ4_9STRA (V-type proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA)

HSP 1 Score: 180 bits (457), Expect = 9.320e-51
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAHTELA VFWEKAML+TIEMNN  A+F GFA+F +VTFGV+LCMDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  819 QAIETIEFVLGMVSNTASYLRLWALSLAHTELATVFWEKAMLTTIEMNNPIAVFCGFAVFMSVTFGVLLCMDVLECFLHALRLHWVEFQNKFYKADG 915
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A7S1E4B3_9STRA (V-type proton ATPase subunit a n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4B3_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.780e-50
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAH+ELA VFWEKAMLST+ +N  FA FIGF +FA VT GV+L MDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:   68 QAIETIEFVLGMVSNTASYLRLWALSLAHSELATVFWEKAMLSTLNLNW-FAAFIGFGVFAGVTLGVLLMMDVLECFLHALRLHWVEFQNKFYKADG 163
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A482SCZ1_9ARCH (V-type ATP synthase subunit I n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCZ1_9ARCH)

HSP 1 Score: 177 bits (449), Expect = 6.100e-50
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            QAIETIEFVLGMVSNTASYLRLWALSLAHTELA VFWEKAM+S+IE NN  AIFIG+AIFAAVTFGV+L MDVLECFLHALRLHWVEFQ+KFYKADG
Sbjct:  668 QAIETIEFVLGMVSNTASYLRLWALSLAHTELALVFWEKAMISSIETNNPVAIFIGYAIFAAVTFGVLLAMDVLECFLHALRLHWVEFQNKFYKADG 764
[Close]
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Match: A0A1V9ZVV1_9STRA (V-type proton ATPase subunit a (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVV1_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.420e-49
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNAFAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 291
            Q IETIEFVLGMVSNTASYLRLWALSLAH+ELA VF+EKAMLSTI M++  AIFIGFA+FA  TFGVILCMDVLECFLHALRLHWVEFQSKFYKADG
Sbjct:  378 QGIETIEFVLGMVSNTASYLRLWALSLAHSELATVFFEKAMLSTINMDSFIAIFIGFALFAGTTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135386.2502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5K7_9PHAE6.760e-5792.78V-type proton ATPase subunit a n=1 Tax=Ectocarpus ... [more]
A0A662XFK0_9STRA8.160e-5487.63V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
A0A7S2V5Q6_9STRA4.900e-5386.60V-type proton ATPase subunit a n=1 Tax=Fibrocapsa ... [more]
D7FPY6_ECTSI2.350e-5292.78V-type proton ATPase subunit a n=1 Tax=Ectocarpus ... [more]
A0A7S2FQ72_9STRA7.150e-5286.60V-type proton ATPase subunit a n=1 Tax=Florenciell... [more]
A0A2P4WWC9_9STRA1.890e-5185.57V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]
A0A835ZAQ4_9STRA9.320e-5188.66V-type proton ATPase subunit a n=1 Tax=Tribonema m... [more]
A0A7S1E4B3_9STRA5.780e-5084.54V-type proton ATPase subunit a n=1 Tax=Thalassione... [more]
A0A482SCZ1_9ARCH6.100e-5089.69V-type ATP synthase subunit I n=1 Tax=archaeon Tax... [more]
A0A1V9ZVV1_9STRA1.420e-4987.63V-type proton ATPase subunit a (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135386contigH-elongata_contig135386:342..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue9.1e-44
Seed eggNOG ortholog2880.D7FPY6
KEGG koko:K02154
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05165,ko05323,map00190,map01100,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05165,map05323
KEGG ModuleM00160
EggNOG free text desc.vacuolar proton-transporting V-type ATPase complex assembly
EggNOG OGsCOG1269@1,KOG2189@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Hectar predicted targeting categorysignal anchor
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.1095943-CDS-H-elongata_contig135386:341..4691622929804.1095943-CDS-H-elongata_contig135386:341..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135386 342..469 -
1691679163.8573182-CDS-H-elongata_contig135386:341..4691691679163.8573182-CDS-H-elongata_contig135386:341..469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135386 342..469 -
1622929804.122773-CDS-H-elongata_contig135386:824..9901622929804.122773-CDS-H-elongata_contig135386:824..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135386 825..990 -
1691679163.8734393-CDS-H-elongata_contig135386:824..9901691679163.8734393-CDS-H-elongata_contig135386:824..990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135386 825..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135386.2502.1prot_H-elongata_contig135386.2502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135386 342..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135386.2502.1

>prot_H-elongata_contig135386.2502.1 ID=prot_H-elongata_contig135386.2502.1|Name=mRNA_H-elongata_contig135386.2502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QAIETIEFVLGMVSNTASYLRLWALSLAHTELAAVFWEKAMLSTIEMNNA
FAIFIGFAIFAAVTFGVILCMDVLECFLHALRLHWVEFQSKFYKADG*
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mRNA from alignment at H-elongata_contig135386:342..990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135386.2502.1 ID=mRNA_H-elongata_contig135386.2502.1|Name=mRNA_H-elongata_contig135386.2502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at H-elongata_contig135386:342..990- (Himanthalia elongata Himel1 dioecious)
CAGGCGATCGAGACGATCGAGTTCGTGCTCGGCATGGTTTCAAACACGGC
GTCGTACCTGAGGCTGTGGGCTCTTTCGCTCGCCCACACGGAGCTGGCGG
CGGTTTTCTGGGAGAAGGCGATGCTCTCGACCATCGAGATGAACAACGCC
TTCGCTATCTTCATCGGTGAGCTTATACGGCATCGAGCTCAGGGCTGCGG
GGGGGGCTGTATTCAACGCCGATCCGCTTGCCCTCCAGCGCGCAATCTCT
CTCTCTCTCTGTGTGTGTGTGTGTGATCTTTGGTTTGGAATGTCGATGAT
TCCACGGCCGCTTGATGATGTGATTCCACGGCCTCTTAATGATGTGATTC
CACGGCCTCTTAATGATTCTGAGTCGGCCCACATAAACTAGAGTCCCACA
TAAATAAACTAGAATCAACACAGTATTTTTTTTTATCCAAAATTCAAATT
GTCGTCATGCCCCTTTTTATCTCCTTTTTATCTCCTTTTGTTCATTTGTT
TGTTTGTTTGTTTTTTGTCAGGGTTTGCAATTTTCGCGGCGGTAACTTTC
GGTGTTATTCTCTGCATGGACGTGTTGGAGTGCTTCCTCCACGCGCTGCG
TCTTCACTGGGTAGAGTTCCAGAGCAAGTTCTACAAGGCCGACGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig135386:342..990-

>mRNA_H-elongata_contig135386.2502.1 ID=mRNA_H-elongata_contig135386.2502.1|Name=mRNA_H-elongata_contig135386.2502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig135386:342..990- (Himanthalia elongata Himel1 dioecious)
CAGGCGATCGAGACGATCGAGTTCGTGCTCGGCATGGTTTCAAACACGGC
GTCGTACCTGAGGCTGTGGGCTCTTTCGCTCGCCCACACGGAGCTGGCGG
CGGTTTTCTGGGAGAAGGCGATGCTCTCGACCATCGAGATGAACAACGCC
TTCGCTATCTTCATCGCAGGCGATCGAGACGATCGAGTTCGTGCTCGGCA
TGGTTTCAAACACGGCGTCGTACCTGAGGCTGTGGGCTCTTTCGCTCGCC
CACACGGAGCTGGCGGCGGTTTTCTGGGAGAAGGCGATGCTCTCGACCAT
CGAGATGAACAACGCCTTCGCTATCTTCATCGGGTTTGCAATTTTCGCGG
CGGTAACTTTCGGTGTTATTCTCTGCATGGACGTGTTGGAGTGCTTCCTC
CACGCGCTGCGTCTTCACTGGGTAGAGTTCCAGAGCAAGTTCTACAAGGC
CGACGGGTGAGGTTTGCAATTTTCGCGGCGGTAACTTTCGGTGTTATTCT
CTGCATGGACGTGTTGGAGTGCTTCCTCCACGCGCTGCGTCTTCACTGGG
TAGAGTTCCAGAGCAAGTTCTACAAGGCCGACGGGTGA
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