mRNA_H-elongata_contig135381.2501.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI) HSP 1 Score: 222 bits (566), Expect = 2.930e-71 Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 315
LQS+QDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYT+ERLE+LDDAFKLFRCHTIMNCTK CPKHLNPGKAIANIKKRVHAL
Sbjct: 178 LQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE) HSP 1 Score: 214 bits (544), Expect = 2.090e-68 Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ---------AYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 315
LQS+QDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ AYRWIDDSRDDYT+ERLE LDDAFKLFRCHTIMNCTK CPKHLNPGKAIANIKKRVHAL
Sbjct: 133 LQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQGGVEVGAVEAYRWIDDSRDDYTKERLELLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 244
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA) HSP 1 Score: 203 bits (516), Expect = 6.900e-64 Identity = 88/103 (85.44%), Postives = 99/103 (96.12%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 315
LQSV+DRKKLDGMYECI+CACCST+CPSYWWN DKYLGPAVLMQAYRWI+DSRD+YT+ERLE LDDAFKL+RCHTIMNC++ CPKHLNPGKAIA+IKKR+ AL
Sbjct: 161 LQSVEDRKKLDGMYECIMCACCSTACPSYWWNGDKYLGPAVLMQAYRWIEDSRDEYTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAL 263
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA) HSP 1 Score: 201 bits (511), Expect = 4.200e-63 Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 315
LQS+ DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNC++ CPKHLNPGKAIA+IKKR+ A+
Sbjct: 163 LQSIADRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIEDSRDEFTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAI 265
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7R9W5S4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5S4_9STRA) HSP 1 Score: 201 bits (510), Expect = 4.530e-63 Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 306
LQS +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T+ERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAI NIKK++
Sbjct: 157 LQSREDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTKERLEDLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIGNIKKKL 256
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA) HSP 1 Score: 201 bits (510), Expect = 9.600e-63 Identity = 88/102 (86.27%), Postives = 98/102 (96.08%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHA 312
LQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD+YT+ERLEALDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A
Sbjct: 179 LQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA 280
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA) HSP 1 Score: 198 bits (503), Expect = 7.960e-62 Identity = 86/100 (86.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 306
LQ+ ++R KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAIANIKK++
Sbjct: 167 LQTRENRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDEFTKERLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIANIKKKL 266
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A448ZPF1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPF1_9STRA) HSP 1 Score: 197 bits (500), Expect = 6.110e-61 Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 315
LQS QDR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD T++RL+ LDDAFKL+RCHTIMNCTK CPKHLNPGKAIA IKKR+ ++
Sbjct: 203 LQSKQDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDGQTKKRLDELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIAQIKKRMASI 305
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7S2LAL1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAL1_9STRA) HSP 1 Score: 194 bits (493), Expect = 3.390e-60 Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 306
LQ+ +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDDY ++RL LDDAFKL+RCHTIMNCTK CPK+LNPGKAIANIKK++
Sbjct: 174 LQTKEDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDYGKKRLAELDDAFKLYRCHTIMNCTKVCPKNLNPGKAIANIKKKL 273
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: B8BYI4_THAPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI4_THAPS) HSP 1 Score: 192 bits (489), Expect = 4.140e-60 Identity = 83/100 (83.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query: 7 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 306
LQ+ +DR KLDGMYECILCACCST+CPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T +RL LDDAFKL+RCHTIMNC+K CPKHLNPGKAIA+IKK++
Sbjct: 138 LQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTDKRLAELDDAFKLYRCHTIMNCSKVCPKHLNPGKAIAHIKKKL 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135381.2501.1 >prot_H-elongata_contig135381.2501.1 ID=prot_H-elongata_contig135381.2501.1|Name=mRNA_H-elongata_contig135381.2501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp KSLQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWback to top mRNA from alignment at H-elongata_contig135381:230..1621- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135381.2501.1 ID=mRNA_H-elongata_contig135381.2501.1|Name=mRNA_H-elongata_contig135381.2501.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-elongata_contig135381:230..1621- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135381:230..1621- >mRNA_H-elongata_contig135381.2501.1 ID=mRNA_H-elongata_contig135381.2501.1|Name=mRNA_H-elongata_contig135381.2501.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig135381:230..1621- (Himanthalia elongata Himel1 dioecious)back to top |