mRNA_H-elongata_contig13534.2498.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13534.2498.1
Unique NamemRNA_H-elongata_contig13534.2498.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13534.2498.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.180e-20
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MPWICGEPECKKQPYYAEPGSKKPKFCFLHKQAGHIDVRNKR 126
            MPWICGEPECKKQPYYAEPG KKPK+CFLHK+ GHIDVRNKR
Sbjct:    1 MPWICGEPECKKQPYYAEPGQKKPKYCFLHKKPGHIDVRNKR 42
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BLAST of mRNA_H-elongata_contig13534.2498.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.980e-18
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 MPWICGEPECKKQPYYAEPGSKKPKFCFLHKQAGHIDVRNKR 126
            MPWICGE ECKKQPYY EPG KKPK+CFLHK+ G IDVRNKR
Sbjct:    1 MPWICGETECKKQPYYGEPGQKKPKYCFLHKKPGQIDVRNKR 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13534.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMP7_ECTSI1.180e-2090.48EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KYH5_9PHAE5.980e-1883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13534contigH-elongata_contig13534:8148..8273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue2.4e-17
Seed eggNOG ortholog2880.D7FMP7
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.6934998-CDS-H-elongata_contig13534:8147..82731622929803.6934998-CDS-H-elongata_contig13534:8147..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13534 8148..8273 +
1691679163.6863918-CDS-H-elongata_contig13534:8147..82731691679163.6863918-CDS-H-elongata_contig13534:8147..8273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13534 8148..8273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13534.2498.1prot_H-elongata_contig13534.2498.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13534 8148..8273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13534.2498.1

>prot_H-elongata_contig13534.2498.1 ID=prot_H-elongata_contig13534.2498.1|Name=mRNA_H-elongata_contig13534.2498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MPWICGEPECKKQPYYAEPGSKKPKFCFLHKQAGHIDVRNKR
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mRNA from alignment at H-elongata_contig13534:8148..8273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13534.2498.1 ID=mRNA_H-elongata_contig13534.2498.1|Name=mRNA_H-elongata_contig13534.2498.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig13534:8148..8273+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTGGATTTGCGGGGAGCCCGAGTGCAAGAAACAACCCTACTACGC
TGAACCTGGCAGCAAGAAACCCAAGTTCTGCTTCCTCCACAAGCAGGCTG
GGCACATCGATGTACGCAACAAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig13534:8148..8273+

>mRNA_H-elongata_contig13534.2498.1 ID=mRNA_H-elongata_contig13534.2498.1|Name=mRNA_H-elongata_contig13534.2498.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig13534:8148..8273+ (Himanthalia elongata Himel1 dioecious)
ATGCCGTGGATTTGCGGGGAGCCCGAGTGCAAGAAACAACCCTACTACGC
TGAACCTGGCAGCAAGAAACCCAAGTTCTGCTTCCTCCACAAGCAGGCTG
GGCACATCGATGTACGCAACAAGAGGATGCCGTGGATTTGCGGGGAGCCC
GAGTGCAAGAAACAACCCTACTACGCTGAACCTGGCAGCAAGAAACCCAA
GTTCTGCTTCCTCCACAAGCAGGCTGGGCACATCGATGTACGCAACAAGA
GG
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