mRNA_H-elongata_contig13533.2496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13533.2496.1
Unique NamemRNA_H-elongata_contig13533.2496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: D7FXW9_ECTSI (Intraflagellar transport protein 122 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW9_ECTSI)

HSP 1 Score: 781 bits (2017), Expect = 2.930e-265
Identity = 400/565 (70.80%), Postives = 453/565 (80.18%), Query Frame = 2
Query:  647 RQGNRWLLDVGDWEAASKLFVQCAEPFRAAQLTCKGRREGWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDER--RQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVS--LSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRR-HGRYGTH--AQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGSC 2320
            R+   W  +VGDW  AS+LF++  EP RAA++T KGR EGWQ ALAEI RSV KTE  +LS+CGKELSLAG+DDLA+E Y+KMDD  NV+ALYV+ QNWSEAVKLS+EH   ++D VFLPYALWL D+GRFDEALEAF +AGRRDLSG MT QLILN+VAK RFDDASYYYW+SS EA+ AAE  +++  E+  R+A   A EHSR ADLYHAFHHVHSFTTDPFTDLQPEVLLQ SRFLVNSLG+AE PRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQR+PPLWQDQIDLDML VQAKPVRD+PELFAACFRCG SNPLLSP+T  S  L S LS     T       G     LPWGDACTTCRHPFVRSFFNFESLPLVEF+P+PG+  ++ALELI  + PQG R  GR   H    +W EAKEG ADVM LGSDD   G  +DD  E   V G+E+FNRCIN  LE QE++++Y  V+ S +CL+ALKRE+VFRVPPGT  PR +L+KNMMPDIPLALSQPCGRFFHE DFEF+YLR  RCPFSRV+DVGDYGSC
Sbjct:  777 RRQAEWAEEVGDWSVASELFLKSGEPLRAAEITIKGRGEGWQDALAEIVRSVTKTETKILSVCGKELSLAGFDDLAKEAYMKMDDFTNVMALYVKHQNWSEAVKLSEEHGRKYDDAVFLPYALWLRDKGRFDEALEAFQRAGRRDLSGAMTEQLILNSVAKARFDDASYYYWRSSTEAFAAAEKDKTKTSEKDIRKAQRIAEEHSRLADLYHAFHHVHSFTTDPFTDLQPEVLLQVSRFLVNSLGEAEPPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRVPPLWQDQIDLDMLTVQAKPVRDSPELFAACFRCGASNPLLSPYTGASNSLGSTLSKMPRRTDGGGR--GRHDAPLPWGDACTTCRHPFVRSFFNFESLPLVEFQPDPGLTDEEALELITASPPQGGRGRGRKARHRGGNQWHEAKEGDADVMALGSDD--EGANDDDDLEGNYVPGEELFNRCINRTLEAQEDSSEYMVVVASAKCLRALKREDVFRVPPGTRSPRARLYKNMMPDIPLALSQPCGRFFHEEDFEFSYLRESRCPFSRVTDVGDYGSC 1337          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: F0XY87_AURAN (Intraflagellar transport protein 122 homolog n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY87_AURAN)

HSP 1 Score: 468 bits (1203), Expect = 2.660e-145
Identity = 267/581 (45.96%), Postives = 353/581 (60.76%), Query Frame = 2
Query:  605 ASKSSRDARPNGQKRQGNRWLLDVGDWEAASKLFVQCAEPFRAAQLTCKGRREGWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQE--------HKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDERRQALARAYEHS-RAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGSC 2320
            AS  S D R     R+   W  +V DW AA+ ++V   +  RA +L  + ++  W   +A IARSV  T + VL  C +    AG D LAREVY K+DD   +L LYVR Q W+EA+KL+++        H+  F+  ++LPYA WL    RFDEALEA+ K+GR D++  M  QL  NAV ++RF DA+YYYW  + E  + A   +S  D     +  AY      ADLY+A++ + SF   PFT LQPEVL Q +RFLVN LG  EAP GIS+   L+ LAKQAK LGA+KLARFAYD+LQ  ++P  WQ+Q+D+DML + +KPVRDNPEL   C+RCG +N LL+P T               A+ +N+ G + +R    D CT+C HPFVRSF NFE LPLVEF PE  +G D+ALELIR   P+  R  R      +W E+KEG A+VM++G DD     ++DD+E+        +FN+CI+  L  QE    Y PV V    L++L+RE VF+  P   G R   +K+ + D+ +A+SQ C RFFHE DFEF  LR G CPFSRV DVGD+G C
Sbjct:  725 ASSDSIDTRD--LVRRQAEWAEEVEDWAAAADMYVSAGDAMRAVKLLGEHQQGNWTEQMAAIARSV--TGEDVLRQCARCFLAAGEDALAREVYAKLDDVEALLQLYVRKQQWAEAIKLAEDASAKFSNAHRAKFDQTLYLPYAEWLALHDRFDEALEAYRKSGRPDMAQHMMEQLTCNAVVESRFKDAAYYYWLLASETLHVASG-ESGDDVAVAKIMPAYSAQLHKADLYYAYNFIESFFL-PFTPLQPEVLFQCARFLVNGLGAREAPHGISKVKILFALAKQAKHLGAYKLARFAYDKLQHMKVPDEWQEQLDVDMLTIHSKPVRDNPELLPVCYRCGAANALLNPATNA-------------ATLSNKVGDERSR----DVCTSCGHPFVRSFLNFEILPLVEFIPEAPLGDDEALELIREAPPETGRDRR--KLRGQWNESKEGEANVMSMGGDDDAY--DDDDAED--------LFNKCIHRTLSNQEGVNSYAPVTVDAETLRSLRREHVFQCKPRAPGMRATYYKSAIADVHIAISQSCHRFFHEEDFEFQVLRDGACPFSRVKDVGDFGPC 1270          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A812QAW2_SYMMI (Ift122 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QAW2_SYMMI)

HSP 1 Score: 421 bits (1082), Expect = 4.200e-136
Identity = 237/525 (45.14%), Postives = 324/525 (61.71%), Query Frame = 2
Query:  764 GWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDERRQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEA-PRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGR--RHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEE--DDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLV-SFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDI-PLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGS 2317
            GWQ+AL ++ R+ P   + VL+ CG+ L+    D LARE Y K+ D   ++AL+V+ Q W EA KL+ E++G F+  VFLPYA WL  Q R ++A++A++KAGR+DL+  +  +L LNAV +TRF DASYYYW  +K       D +   D   Q      EH+  ADLY+A+  + S+ TDPFT   PE+L Q SRF++NSLG + + P GIS+A TLYTLA+Q+ +L A+KLAR +YDRL + ++P  WQD+++ DML VQAKPVRDNP+   +C+RC ++NPLL+PFT                          N+   GD CT C HPFVRSF NF+ LPLVEF PEP I  ++A+ELIRT+    R  R     +    W E K G AD+MT GS  +D  GE+        +G S +E+F  C+N  LE Q     Y PV V +   L+ +KR EVF   P +   R   ++NM+P++  +A+SQ C RFFH  DFEF+YL    CPFSR++DVG+YGS
Sbjct:   19 GWQLALIDVVRATPTDVRDVLAFCGEILTQHNEDALAREAYTKLGDVNKLMALFVKRQMWVEAAKLADENEGKFDSSVFLPYAEWLIIQDRCEDAIQAYNKAGRQDLARKILEELTLNAVVETRFKDASYYYWLLAK-------DIREGTDSNYQLEC---EHN--ADLYYAYSSIQSYVTDPFTSQSPELLFQVSRFIINSLGSSGSIPYGISKAATLYTLARQSMILEAYKLARHSYDRLNKLQIPSRWQDEVERDMLIVQAKPVRDNPDQLPSCYRCSSTNPLLNPFT--------------------------NKFAKGDVCTNCGHPFVRSFINFDILPLVEFVPEPSITDEEAVELIRTSPGAARSPRATNGESSKSGWNEGKVGHADMMTFGS--VDSNGEDVMGPGSMTSGPS-EELFANCLNKTLENQMNAMSYIPVTVDTVTLLQGMKRSEVFVCRPSSPEKRATFYRNMLPEVVEIAISQSCHRFFHLEDFEFSYLSNKSCPFSRLNDVGEYGS 502          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A8J2WGR4_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WGR4_9STRA)

HSP 1 Score: 410 bits (1053), Expect = 6.250e-124
Identity = 235/557 (42.19%), Postives = 324/557 (58.17%), Query Frame = 2
Query:  671 DVGDWEAASKLFVQCAEPFRAAQLTCKGRREGWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFND--------IVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDERRQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGS 2317
            +  DW AA+ L V      +A +L  + + +GW   L+ I R V  T + VL  C +     G D+ A+EVY+K+DD  ++L LYVR Q+W  A+KL+++  GTF++         ++LPYA WL    RFDEALEA+ K+GR D +  M  +L  NAV ++RF DASYYYW  + E    A    +++D  ++ ++   E    ADLY+A+ HV  F   P+T L+PEVL Q +RFL+N LG  EAP GISRA  LYTLAKQAK  GAFKLAR+AYD+L R ++P  W+D++D++ L + A P+RD  +L   C+RCG SN LL+P ++ S  S++                 H      D CT+C HPFVRSF NFE LPL+EF PE  I  ++AL+LI+   P+ +  G          E KE  ADV+           ++DD E+R        F R IN  L+ Q    +Y PV V    L++L R EVF   P   G R   +K+ +PD+ +ALSQ C RFFHE DFE+A L+ GRCP+SR  DVGD+G+
Sbjct:  732 ETSDWSAAADLQVSAGNALQAVRLLHEHKPDGWIEKLSLIVRQV--TAEDVLRQCARAFLANGDDERAKEVYVKLDDVESLLGLYVRKQDWEAALKLAEDPSGTFSEETRAKFDEALYLPYAEWLAVHDRFDEALEAYRKSGREDRAARMVQELTFNAVVESRFKDASYYYWLLASETLRVA----AKKDNLQKVMSTYTEQLHRADLYYAYAHVEDFFL-PYTPLRPEVLFQCARFLINGLGGKEAPFGISRAKILYTLAKQAKTCGAFKLARYAYDKLLRMKLPDAWRDEVDVEALTIHAAPLRDKSDLLPVCYRCGASNALLNPASSHSQGSSV-----------------HR-----DVCTSCGHPFVRSFLNFEVLPLIEFVPEASISDEEALDLIK-EFPEDKNSG----------EGKE--ADVVF----------DDDDDEDR--------FTRAINDTLQAQAGADEYKPVTVDAETLRSLYRAEVFCCKPRQQGLRATYYKSAIPDVHMALSQSCHRFFHEDDFEYAVLKEGRCPYSRAKDVGDFGT 1228          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A835ZL39_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL39_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 3.980e-118
Identity = 237/579 (40.93%), Postives = 309/579 (53.37%), Query Frame = 2
Query:  647 RQGNRWLLDVGDWEAASKLFVQCAEPFRAAQLTCKGR--REGWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAED-PQSRQDERRQALARAYE-HSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETT-----------------QYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGSC 2320
            RQ  +W  +  DW  A+ +++   +   AA ++ +    REGWQ  L E              LCG     AG  +LA EV  K++D + ++AL+V+ Q+W  AVKLS+EH G F+  VFLPYA WL   GR+D+AL+A+ +AGR DLS     QLI  +    R+ DA++Y+W S++E     +   +S  D+  +A   AYE HS  ADLY+AF+HV                   SR+L+N LG  E P GISR HTLYTLAKQAK LGA+KLAR A + LQR R+P  WQ Q+D+DML++QA+PVRD  EL   C+RCG+S+PLLS                                  GD C +C+HPFVRSF  FE LPLVEF P  GI  + AL +IR   P   +  R G +A  W+E+K  GADVM L  D+ +                 + FN CIN AL+ QE  +                  Y  V+   R L  L+R +V  V P       + F+NMM DI +A    C RFFHE DFEFA LR  +CPF R SDVGDYGSC
Sbjct:  745 RQQAKWAEETNDWRGAADMYLSAGDGMSAATISTRDAKTREGWQTVLIE--------------LCGDTFVAAGEHELALEVLSKLEDYSALMALHVQRQDWVAAVKLSEEHAGKFDQKVFLPYAEWLAATGRYDDALDAYRRAGRADLSLRTLRQLIETSAVMQRYKDAAHYHWLSAREVLGGLKGGARSGWDQEERAAYAAYEAHSLKADLYYAFYHV-------------------SRYLINILGTEEPPEGISRVHTLYTLAKQAKSLGAYKLARSALELLQRHRIPAAWQGQVDMDMLSIQARPVRDPQELLPVCYRCGSSSPLLST------------------------------RGEGDTCASCKHPFVRSFLTFEVLPLVEFRPADGISDEDALGMIRAR-PHDPKFRRKGGNANPWQESKVNGADVMNLADDNGNXXXXXXXXXXXXXXGSSDPFNACINAALDRQEAGSGXXXXXXXXXXXXXXXXXYAMVVADARALARLRRSDVHYVAPPPPLRTGRFFRNMMADIAVAACPACARFFHEDDFEFAVLRDRQCPFCRASDVGDYGSC 1259          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A7S3NI59_9STRA (Intraflagellar transport protein 122 homolog n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI59_9STRA)

HSP 1 Score: 363 bits (933), Expect = 3.460e-106
Identity = 233/576 (40.45%), Postives = 317/576 (55.03%), Query Frame = 2
Query:  647 RQGNRWLLDVGDWEAASKLFVQCAEPFRAAQLTCKGRREG---------WQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFN-DIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDER-RQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPP-LWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPW---GDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGV-SGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVS--DVGDYGSC 2320
            R+   W  +  DW AA++++V   +P R  +L   G   G         W   LA++AR++    + VL  C      A  DDLA E Y K+ D  +++AL+VR + W EA+ L++++ G  +   ++ PYA WL    RFDEAL+A+ K+G+ D +  M  QL LNAV ++RF DA YYYW  + E    A    S  D   R AL +  +  R AD+Y+A++ + SF   PFT  QPE L  A+RFL+N LG+ +AP GISRA  LYTLA QAK LGAFKLARFAYD+LQ  ++P  L  D ++LD+LA++AKP+RDNP+L   C+RCG SNPLL+P                   + +R    H    +    D CT+C HPFVRSF +F+ LPLVEF PE GI  + AL+LIR   P+        T A     +K        + S              R G+ S D++FN+CI   L     +    PV V    L++L+RE+V+   P     R   + N +PD+ LA+S    RFFHE DFEF  LR GRCPFSRV   D+GD G C
Sbjct:  810 RRQAAWAEETEDWAAAAEMYVSSGDPMRGVRLL--GEHLGGNSTEIDPTWLEQLAQLARTITGAPE-VLKQCATYFEQADRDDLALETYRKLGDIKSLVALHVRKERWHEAITLAEQNPGLVDLSGLYTPYAEWLALADRFDEALDAYRKSGKPDQAQHMMQQLTLNAVVESRFKDAGYYYWLLATECLKVASLQSSNDDHALRTALPQYRDRLRNADIYYAYNLIDSFFL-PFTPTQPEALFNAARFLINRLGNTDAPAGISRAKILYTLATQAKHLGAFKLARFAYDKLQHMKLPEDLDLDTLELDILAIRAKPLRDNPDLLPVCYRCGASNPLLNP-------------------AAHRHSGTHGTSTYCGGHDICTSCGHPFVRSFLDFDILPLVEFVPESGIDDNTALDLIREPPPRTTP-----TTATARLRSKIHDXXXXXVAS--------------REGLASSDDLFNKCIQKNLA-NSSSDSSIPVTVDTDTLRSLRREQVYVCKPIAPQMRATFYFNSLPDVHLAISHH--RFFHEEDFEFDVLRQGRCPFSRVKAQDLGDTGPC 1340          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A7S4D6V4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6V4_HETAK)

HSP 1 Score: 332 bits (852), Expect = 2.470e-104
Identity = 178/342 (52.05%), Postives = 231/342 (67.54%), Query Frame = 2
Query:  845 LSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAE------DPQSRQDERRQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIR 1852
            +S  G D  A+EVYLK+ D + ++A+YVR Q+W  AV LS+EH G F+  VFLPYA WL    RFDEAL A+ KAGR D S  + +QL  NAV + RF DA+YYY+    E   AAE        +  +  R++ALA    +++ A+LY A+ H++SFTTDPFT+LQPE+L Q SR+++N +G  +AP GISR +TLYTLAKQAK LGA+KLARFAYDRL   R+PP W+DQ+DLDML VQAKPVRD PE+   C+RCG SNPLL+P                 AS++  +G D      GD+CT C HPFVRSF +FE LPLVEF  +P + +++AL+LIR
Sbjct:    1 MSGVGADLAAKEVYLKLGDVSALMAIYVRRQDWEAAVALSEEHAGKFDRSVFLPYAEWLALNVRFDEALGAYRKAGRPDQSQKLMSQLTDNAVMEGRFKDAAYYYYLLGAECLRAAEVLGEAKGGELSEAARKKALAEYDNYNKLANLYFAYQHIYSFTTDPFTNLQPEMLFQVSRYVLNLMGAEDAPYGISRVNTLYTLAKQAKNLGAYKLARFAYDRLNLMRVPPAWRDQLDLDMLTVQAKPVRDTPEILPVCYRCGASNPLLAPAANA-------------ASASGHSGQDK-----GDSCTNCGHPFVRSFLSFEVLPLVEFRADPALSYEEALDLIR 324          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A7R9U7I4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7I4_9STRA)

HSP 1 Score: 322 bits (824), Expect = 4.530e-100
Identity = 177/378 (46.83%), Postives = 228/378 (60.32%), Query Frame = 2
Query: 1256 RAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDD----IDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVF----RVPPGTCGP----------------RVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGS 2317
            R ADLY+AF  + SFT+DPFT L PEVL Q +R+++N LG + AP GISR HTLYTLAKQAK LGA+K ARFAY +LQ+ ++P  WQDQID DMLA+QAKP+RDNPEL + C+RCG +N  L                                   GD C++C HPF+RSF NF+ LPLVEF PE  I  ++ALELIR+  P         +H  +W E +  GAD +TLG D       + G  DDS +        +F++C+N+AL+ QE T +Y PV+V  R L +L+R+EVF     VPP   G                 R++ +KNM+  I +ALSQPCGRF HE +FE+AYL+ G CPFSRV D+GDY S
Sbjct:    1 RHADLYYAFQRIRSFTSDPFTSLLPEVLFQVARYIINCLGSSPAPYGISRVHTLYTLAKQAKALGAYKFARFAYQKLQQLKVPSRWQDQIDFDMLAIQAKPMRDNPELLSVCYRCGETNKSLLNMD-------------------------------GDMCSSCLHPFIRSFINFDILPLVEFVPEDRISEEEALELIRSAPPAASDRA---SHDSKWHETRGDGADFLTLGEDGKSGVTGIHGAVDDSTD--------LFSQCVNSALDKQEYTNRYCPVVVDARTLTSLRRDEVFVTRMAVPPERAGDVLPAVGGKGKDGAFIGRLRYYKNMLAGIHVALSQPCGRFAHEEEFEYAYLKEGGCPFSRVKDLGDYSS 336          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A6H5KUR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR3_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 8.710e-95
Identity = 165/272 (60.66%), Postives = 189/272 (69.49%), Query Frame = 2
Query: 1535 MLAVQ------AKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNR----LPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSRVSDVGDYGSC 2320
            MLAVQ      AKPVRD+PELFAACFRCG SNPLLSP+T  S S       SL+  S    G    R     PWGDACTTCRHPFVRS FNFESLPLVEF+P+PG            +V +G +         +W EAKEG ADVM LGSDD    G +DD  E + V G+E+FNRCIN  LE QE++ +Y  V+ S +CL+ALKRE+VFRVPPGT  PR +L+KNMMPDIPLALSQPCGRFFHE DFEF+YLR  RCPFSRV+DVGDYGSC
Sbjct:    1 MLAVQVMQKLSAKPVRDSPELFAACFRCGASNPLLSPYTGASNSL----GSSLSKMSRRTDGGGRGRHDAPFPWGDACTTCRHPFVRSSFNFESLPLVEFQPDPG-----------EDVEEGEKPAIV-VEMWQWHEAKEGDADVMALGSDDE---GADDDDLEGSYVPGEELFNRCINRTLEAQEDSNEYMVVVASAKCLRALKREDVFRVPPGTRSPRARLYKNMMPDIPLALSQPCGRFFHEEDFEFSYLRESRCPFSRVTDVGDYGSC 253          
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Match: A0A6S7HZA4_PARCT (Intraflagellar transport 122 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HZA4_PARCT)

HSP 1 Score: 310 bits (795), Expect = 6.490e-91
Identity = 185/550 (33.64%), Postives = 287/550 (52.18%), Query Frame = 2
Query:  647 RQGNRWLLDVGDWEAASKLFVQCAEPFRAAQLTCKGRREGWQIALAEIARSVPKTEKGVLSLCGKELSLAGYDDLAREVYLKMDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFDEALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAAEDPQSRQDERRQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLLQASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQRQRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVSLSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLPLVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVMTLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLVSFRCLKALKREEVF--RVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEGDFEFAYLRGGRCPFSR 2290
            +Q   W     D  AA+ +++   E  +A +L  +    GW   L E+ R++ K E   L  C          D A E+Y+KM D  +++ L+V +++W EA  L  E +    D V++PYA WL +  RFDEA EAFHK+G++  +  +  QL  NAV + RF+DA YYYWK S +  +   D   + D   + L + +++   A++YH +H +  +T +PFTD  PE L   +R+L++ L   E P GISR  TL+ L+KQ K LGA+K+AR+AYD+LQ  ++P  +Q+ ID+  + +++KP  DN E+   C+RC T+NPLL+                                  G+ C  CR PFV SF +F+ LPLVEF  E GI  ++A++LI  +VP  R+  +      +W E   G    + + SD+ D G ++D   E+                + F++  T++ PV V    L+++ R EVF  R P      +   +K++MPD+ + L Q C R FH  D++   L+ G CPF R
Sbjct:  249 KQQAEWAKSSNDPRAAADMYLTAGEHMKAIELIGEN---GWVEKLLEVGRNLNKAETEALKKCAHYFVKMDQHDYATEMYVKMGDIKSLIKLHVDTRHWDEAFHLL-EKQPDLKDDVYIPYANWLAENDRFDEAQEAFHKSGQQHKAVQVLEQLTHNAVVENRFNDAGYYYWKLSMQCLHVVLDQDGKTDT--EMLRKFHQYQTKAEIYHLYHSIQRYTDEPFTDHLPEALFNIARYLLHLLLK-ETPLGISRVATLFALSKQGKHLGAYKMARYAYDKLQSLKVPARFQELIDVGSITIRSKPFSDNEEVLPLCYRCSTTNPLLNSK--------------------------------GNHCINCRQPFVFSFSSFDVLPLVEFVLEDGISDEEAVKLIEADVPANRKKDK-----SQWNEVDMGNVQSLQI-SDEADGGDDDDPFTEKL---------------MSFEQGGTEFIPVKVGRAVLQSMNRHEVFIKRWPQPL---KFNYYKSIMPDVAITLCQTCNRMFHSEDYDLLVLQKGHCPFCR 735          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13533.2496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXW9_ECTSI2.930e-26570.80Intraflagellar transport protein 122 homolog n=1 T... [more]
F0XY87_AURAN2.660e-14545.96Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A812QAW2_SYMMI4.200e-13645.14Ift122 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A8J2WGR4_9STRA6.250e-12442.19Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A835ZL39_9STRA3.980e-11840.93Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A7S3NI59_9STRA3.460e-10640.45Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A7S4D6V4_HETAK2.470e-10452.05Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U7I4_9STRA4.530e-10046.83Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5KUR3_9PHAE8.710e-9560.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7HZA4_PARCT6.490e-9133.64Intraflagellar transport 122 homolog n=1 Tax=Param... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13533contigH-elongata_contig13533:925..8009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score680.2
Seed ortholog evalue6.7e-193
Seed eggNOG ortholog2880.D7FXW9
Preferred nameIFT122
KEGG koko:K16547,ko:K19656
GOsGO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0003002,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010171,GO:0010172,GO:0010646,GO:0010648,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0021510,GO:0021511,GO:0021513,GO:0021532,GO:0021904,GO:0021914,GO:0021915,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030031,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035115,GO:0035136,GO:0035148,GO:0035239,GO:0035295,GO:0035556,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043113,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0045879,GO:0046626,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048568,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051641,GO:0051649,GO:0051668,GO:0051716,GO:0051960,GO:0051961,GO:0060173,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060830,GO:0060831,GO:0060971,GO:0060972,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0072594,GO:0072657,GO:0090596,GO:0097458,GO:0097499,GO:0097500,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1900076,GO:1903441,GO:1905515,GO:1990778,GO:2000026
EggNOG free text desc.ciliary receptor clustering involved in smoothened signaling pathway
EggNOG OGsCOG2319@1,KOG1538@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons16
Model size2323
Cds size1431
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.4173-CDS-H-elongata_contig13533:924..11851622929803.4173-CDS-H-elongata_contig13533:924..1185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 925..1185 -
1691679163.50621-CDS-H-elongata_contig13533:924..11851691679163.50621-CDS-H-elongata_contig13533:924..1185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 925..1185 -
1622929803.4273553-CDS-H-elongata_contig13533:1595..17541622929803.4273553-CDS-H-elongata_contig13533:1595..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 1596..1754 -
1691679163.5176892-CDS-H-elongata_contig13533:1595..17541691679163.5176892-CDS-H-elongata_contig13533:1595..1754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 1596..1754 -
1622929803.436403-CDS-H-elongata_contig13533:2126..22111622929803.436403-CDS-H-elongata_contig13533:2126..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 2127..2211 -
1691679163.532483-CDS-H-elongata_contig13533:2126..22111691679163.532483-CDS-H-elongata_contig13533:2126..2211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 2127..2211 -
1622929803.4480264-CDS-H-elongata_contig13533:2863..31321622929803.4480264-CDS-H-elongata_contig13533:2863..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 2864..3132 -
1691679163.5435064-CDS-H-elongata_contig13533:2863..31321691679163.5435064-CDS-H-elongata_contig13533:2863..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 2864..3132 -
1622929803.460911-CDS-H-elongata_contig13533:3475..35891622929803.460911-CDS-H-elongata_contig13533:3475..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 3476..3589 -
1691679163.5520492-CDS-H-elongata_contig13533:3475..35891691679163.5520492-CDS-H-elongata_contig13533:3475..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 3476..3589 -
1622929803.4707327-CDS-H-elongata_contig13533:3795..38851622929803.4707327-CDS-H-elongata_contig13533:3795..3885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 3796..3885 -
1691679163.5603437-CDS-H-elongata_contig13533:3795..38851691679163.5603437-CDS-H-elongata_contig13533:3795..3885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 3796..3885 -
1622929803.4796355-CDS-H-elongata_contig13533:4061..41901622929803.4796355-CDS-H-elongata_contig13533:4061..4190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4062..4190 -
1691679163.568561-CDS-H-elongata_contig13533:4061..41901691679163.568561-CDS-H-elongata_contig13533:4061..4190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4062..4190 -
1622929803.489863-CDS-H-elongata_contig13533:4461..45671622929803.489863-CDS-H-elongata_contig13533:4461..4567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4462..4567 -
1691679163.5767858-CDS-H-elongata_contig13533:4461..45671691679163.5767858-CDS-H-elongata_contig13533:4461..4567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4462..4567 -
1622929803.5014496-CDS-H-elongata_contig13533:4776..49491622929803.5014496-CDS-H-elongata_contig13533:4776..4949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4777..4949 -
1691679163.58488-CDS-H-elongata_contig13533:4776..49491691679163.58488-CDS-H-elongata_contig13533:4776..4949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 4777..4949 -
1622929803.512524-CDS-H-elongata_contig13533:5270..53151622929803.512524-CDS-H-elongata_contig13533:5270..5315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 5271..5315 -
1691679163.5930288-CDS-H-elongata_contig13533:5270..53151691679163.5930288-CDS-H-elongata_contig13533:5270..5315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13533 5271..5315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.5234404-UTR-H-elongata_contig13533:5315..54121622929803.5234404-UTR-H-elongata_contig13533:5315..5412Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 5316..5412 -
1691679163.603676-UTR-H-elongata_contig13533:5315..54121691679163.603676-UTR-H-elongata_contig13533:5315..5412Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 5316..5412 -
1622929803.5349598-UTR-H-elongata_contig13533:5889..60111622929803.5349598-UTR-H-elongata_contig13533:5889..6011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 5890..6011 -
1691679163.61341-UTR-H-elongata_contig13533:5889..60111691679163.61341-UTR-H-elongata_contig13533:5889..6011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 5890..6011 -
1622929803.5476186-UTR-H-elongata_contig13533:6215..63901622929803.5476186-UTR-H-elongata_contig13533:6215..6390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 6216..6390 -
1691679163.623646-UTR-H-elongata_contig13533:6215..63901691679163.623646-UTR-H-elongata_contig13533:6215..6390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 6216..6390 -
1622929803.5635054-UTR-H-elongata_contig13533:6595..66651622929803.5635054-UTR-H-elongata_contig13533:6595..6665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 6596..6665 -
1691679163.63487-UTR-H-elongata_contig13533:6595..66651691679163.63487-UTR-H-elongata_contig13533:6595..6665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 6596..6665 -
1622929803.5737805-UTR-H-elongata_contig13533:7023..71901622929803.5737805-UTR-H-elongata_contig13533:7023..7190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7024..7190 -
1691679163.6437035-UTR-H-elongata_contig13533:7023..71901691679163.6437035-UTR-H-elongata_contig13533:7023..7190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7024..7190 -
1622929803.5864248-UTR-H-elongata_contig13533:7305..74701622929803.5864248-UTR-H-elongata_contig13533:7305..7470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7306..7470 -
1691679163.6520047-UTR-H-elongata_contig13533:7305..74701691679163.6520047-UTR-H-elongata_contig13533:7305..7470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7306..7470 -
1622929803.5988908-UTR-H-elongata_contig13533:7913..80091622929803.5988908-UTR-H-elongata_contig13533:7913..8009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7914..8009 -
1691679163.6598654-UTR-H-elongata_contig13533:7913..80091691679163.6598654-UTR-H-elongata_contig13533:7913..8009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13533 7914..8009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13533.2496.1prot_H-elongata_contig13533.2496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13533 925..5315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13533.2496.1

>prot_H-elongata_contig13533.2496.1 ID=prot_H-elongata_contig13533.2496.1|Name=mRNA_H-elongata_contig13533.2496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=477bp
MDDTANVLALYVRSQNWSEAVKLSQEHKGTFNDIVFLPYALWLGDQGRFD
EALEAFHKAGRRDLSGTMTAQLILNAVAKTRFDDASYYYWKSSKEAYYAA
EDPQSRQDERRQALARAYEHSRAADLYHAFHHVHSFTTDPFTDLQPEVLL
QASRFLVNSLGDAEAPRGISRAHTLYTLAKQAKVLGAFKLARFAYDRLQR
QRMPPLWQDQIDLDMLAVQAKPVRDNPELFAACFRCGTSNPLLSPFTAVS
LSSNLSPADSLTASSTNRTGYDHNRLPWGDACTTCRHPFVRSFFNFESLP
LVEFEPEPGIGFDKALELIRTNVPQGRRHGRYGTHAQEWREAKEGGADVM
TLGSDDIDVGGEEDDSEERAGVSGDEIFNRCINTALEFQEETTQYTPVLV
SFRCLKALKREEVFRVPPGTCGPRVKLFKNMMPDIPLALSQPCGRFFHEG
DFEFAYLRGGRCPFSRVSDVGDYGSC*
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mRNA from alignment at H-elongata_contig13533:925..8009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13533.2496.1 ID=mRNA_H-elongata_contig13533.2496.1|Name=mRNA_H-elongata_contig13533.2496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7085bp|location=Sequence derived from alignment at H-elongata_contig13533:925..8009- (Himanthalia elongata Himel1 dioecious)
AGTGTGGCCTTCAATTCGTCTGTGGAAGATACGCTGTGTTTCTCAGGCGA CGGCAAGCTGTATGTTCGCAGCGGATCATTTCCCGTGCAAGAGCAGGTAG CCGCACGTATACAGTACACTGTTGGAAGTATCGCAAAATTTACGATTCTT GTGGTGAGCGGCCACGAAATACAGAAGGCATAACTTCTGGGTAGAAGTCA AACTGACCATCCCTGATTGGGGATAAAGTAAAGAGTCAACGCCTACCGTG GAAGGAAGTCGAAGAACGTCAATGAGTTCATGTTATTACTGGAGAAGTTC TGAGGGGGAAAACGAACGGGAGTTACACGATAAAAGTCCCTATCGTTAGA CAATTGATGCGAACGGCTGACACGCAAGCTACAAATTACACCACAACTTC TGTGACGGCGAGCACCACGAGTTGAGCGTTCGACAATAATAAAGTATCAT TCCCCGGTGATCTGGGCTAACACCGGCTCTACTCTTGACTAACGCTGCTT GTGTCTGCTCTCATGTGAAAACACCTCCCTTGTCGGCAGTTGATCGGTGG AGAGGTCCAGTTGTTTCGGGGCGCTCGCGTGATCAGCCTTGAAAGAGGGA CGTTGTGGACGGTCGACGTCCCTCTGACAAAATCGGTATACCGACACATC GAAACGCGAGAATTCCGAAAGGCGTACGCCGTCGCGTCTCTGGGGGTTAC ACAGGTATGCAGGTGCTACTGATAGTGATGCGATACGTGCTGTGTAATGA AGTCCTATGACAATCGCGGGTCATGGATTTCGACTTCCCCCTGGTTTTGC TCATCTTGCTCTGTCGAAGCGAGACTGGAGCGTGTTGGGTCTGTCTGCAC TTCAAGCGCTGGACTTCGACGTAGGCCGGAAGGCGTTTGTTAGACTGAGA GATCTACATTTCATGGATCTTCTCTCTGAGATAGAGATGAAGGCAGTATA CGAGGCCGCTGCCTCAAAGAAGGATCCGAGGGTCAGGTGAAACTGCTCGA TAGTATGATGTTGTAGTAACTTCCATCTACCTTCAATATTGAAGCTTTTA ACGTCACGGTAAATATTTTGACCGTGAAAAAATGTTCGAGTTGGCCCTGG GCTACGCTTCTCACTAATTACCTGGTGGATTTCTCGTCACGCAGTAGTTT TAAGACGTCCTACCATGGGCAACATTTATGAGGTCACGACACTTCGCACC AAGGTTTTTTGCATTTGCTTCGACCTAACAATACGACTTCGATAGACAGG CCAAATATATTGATTTTGAAACGCGTTAGTCTTTGCCCTATGCTGCACGA TTAAAGACTTGCTGCTGCGACTTGAAAATCGTCTTTCAAAACAGGATAAG GTTGGAAGCCGATGCTTCGGCGGAACTGCTGGCGATACAGGGTAACTTTC AATGCGCAGCAAAGGTGCTTTCGCGTATCACAAAATGTATACAGTAGAAC ACTAGCATTTGATTTGTCGAAGGTGCACCCTTGTCATCCGCTCGTTGAAA TCGCCAAGGGACGTCGACGATCTATGACTTTGCCGTGATGGTATCTGACC CCGACAACAAGTGAGCTTCTCGAACGGATCCATATGCCCGCGAACGTTTG GCACGGGCGTTTGTGGCAGACATGGGCTCGGAACGAAATGATGGACAAGG CCATCAACCTGTTCGTCGATCTCAGACAGTGGGACGAGGCCAAAGTGTTC GCTGCATCATGTAGCGACGCTATGAGCGTCAAAGAGCTCACGCGACGCCA GGCCGAATGGACAGAAGAGGCAAGGAAACAGATGGCTACTTGATGTACCT TCCATCTTCCAGCCTTAGCCCAACCCCCACCCCGAATCGTGATGAGGAGT TTATGTGTGCATATGGTTTTCCGGCTTAAGGGGGGGACGCAAAAAATTGA ATATATTGTTCAAAATTAGTGCTATACCGTAAGTATACATCGGCTTTTAG CTCAAGGAGATGGTGTAACATTTTAAGCATGTGTAATCTGTTGCACAGGT CGGTGACTGGGAGGCGGCTTCGAAGCTCTTTGTCCAGTGTGCGGAGCCAT TTAGGGCCGCTCAGCTTACGTGTAAGGGGAGGCGAGAGGGCTGGCAAATT GCCCTGGCAGAGATTGCCAGGTATACGGCAACACCATAGCTTCTAGGCGT TCTTCTAAAGCATCCGTGTAGAGGGTTCTTGCTTCAACTGTATGGCAGAG AACAGGGGTCGTATAAATCGTATACGTTGTCGACTTTATAGGCATGAGGA TTTACCGCAAACGGCTCGGCTCTTTCCAAACATTCACGAATCGGGTTTTG TCTGATTCATACGGTTAACGCCCTCCCACACATGCATATACATCTTGGGC CGAGTGATGACGAACGTGTTCACGTCACTAATCGTGGTATAGGCTTCGAT ACGCCTGGACCGCGCGTGCATTTTAACAATAAGCAGAACTTATTCCGCGC AGTAACTTTCTTATGGACTGATATGCCTTGCCAGGCGTTCATCATTCTTT TACTCTAGAATTCGAACCCTGAAAAGCCACCGGCCTTCCATTCAGTGCGA GAGCAGCGCACATAGAAACGGAATATTCCTTGCATGTCCTTCGGCAGATC CGTGCCCAAAACGGAGAAGGGAGTGTTGAGCCTATGCGGAAAGGAACTGT CTCTGGCAGGTTACGACGACCTTGCCCGCGAGGTTTATTTGAAAATGGAC GATACCGCCAACGTCTTGGCCTTGTACGTCCGAAGCCAGGTTAGAGCATG TAGGCTATCGCAACGTTATGGATATGATGCGGAAGAGAGCGATCTCTCCT CACATCGCCGAGATTCCTTTGCACGTGAGACTCGTATGAGGAATGCAGAA CGCGGCGAGTCGTGGCGTCACCCGTTTGTATATTTTGTTGAAGAGCGAGG ACCGCACGTTTCACGACACTTTTACTAAGGATCCGACGAGATCCATCCTG CTTAAGTTTACATCGTATTACTGCTATATTATCACGATCTTGACTGACCA CCATATGCTTCGAAAACGACGGCTCTATCACGATATCAATATAATTAATC ACGGCATTAGAACTGGTCGGAGGCGGTGAAACTGTCACAAGAGCATAAGG GAACGTTCAACGACATTGTGTTCTTGCCCTACGCTCTGTGGCTCGGGGAC CAAGGAAGATTCGACGAGGCCCTTGAGGCTTTCCACAAAGCAGGAAGGCG AGATCTGAGCGGCACGATGACTGCGCAACTAATGTGAGAGCCTATACATA CTTTCTGATCATAAGGTAGTAAGAATAATTTTTGGTTTAGCGTGTCGGAT GCCTCGTTGATACAAGTCCTGAGCATGCTTCGTCTAGGGTTGGATGCAAA TTGGGGATGTTACTCCGATCCAGGAGAAACTCAAGCGTTAGAAACGCCAC GTGCCGTTCATTCTTGGTGTTCTGGGGGGGGGGGGGTGGCAGCTTGAACG CGGTGGCGAAGACCAGGTTTGACGACGCCTCCTACTACTACTGGAAGTCT TCGAAGGAAGCTTACTACGCTGCGGAGGACCCACAGAGCAGGCAAGATGT GGAACTCCTAAATACGAAGATTGTGACATTCGTGATTGGCTCGCGGATTG ATATCACCGATCAAACTCGCGCGAAATCAAGTCCTCGTCCTCCACGGCTT ACCATAACGCCCCGACCGTCCTTTTTATCATTCCTAATTGAGATGCCTTG TCAAGATCATCCCTTTGCCGAGAGTCTGGGAAGTACGTGGCGAGACGTCC AACTCTCGCTTGATACACGCATAGCGCCTCTCATTTGTGTGGCTTCCTAT ATTTACTCACAGTATCGAGGAAAGGCGACAAGCCCTGGCGCGTGCGTACG AGCATTCCCGGGCAGCGGACCTGTACCACGCCTTCCACCACGTGCACTCC TTTACAACTGATCCCTTTACTGATCTGCAGCCGGAGGTACTGCTGCAGGT GCGATGAATCGTTGGTTGGTTGGTCGGTTGGTCAGACCTGTGCACGAAGA GTCCTTAAGAGCAGCATACGAATGTTTGTGTCTTCGTTTCAGCCGGGTAA GCTTTACTCTAAGATAATATATAATTATCCGTTCGCGCGATCTTCGTGTT GCCGTGAACGAATTCATCCAAAAGGCATCAAGGTTCCTCGTAAACTCGCT GGGAGATGCGGAGGCGCCCAGAGGCATATCTAGAGCACATACTCTGTACA CCCTAGCCAAACAGGTGCGACAACACTATAGTTTCAACATCGAGCCTTGA TTTATCAAGGCGCCCATCAGTATCTTCTCGTTTGTCGTACATGCATATCT TCTTCACAAGCTTCAAGTATCATTATAGCCGTCCCCGGCATATGATGGCG CCTGTTGTGAGATTGCAACAACCTGGATGGTGACTTACGGGTGGTATTCC CTGGTTCGTTCTGTGTCCAGGCAAAGGTACTCGGCGCCTTCAAATTGGCG CGTTTTGCATATGATCGCCTCCAGAGGCAGAGGATGCCCCCCCTGTGGCA AGATCAGATTGACCTCGACATGCTTGCGGTACAGGTAAAGCAAGGTCACA AATAAATCAGTTGTTGACACATATTGTCTCATGGATATGCTAGTAGCTGC TTTGCATGGGTCTGAGTGCTTACTCCAATCATGATATTTGGTAGTTTTCG CGCGTTGGTGACCAGGGCTCAAAATTGCTCAAAATAGCTCTCCTTGCGCG GCAAGCAGTCCTCTAGACTGATTCCTGCCAACTTCCAGAATGCAAGCCGG ACCAGTCGCGTCGGAAATCTTTCACAAAATGTCACCCTTTGCGAGTTCCT GGTGTCCTCTCGAAGCCGCGAGTGAACCCGTGACCGCAGTACTCCCTCCT CGTATCCCCCCCCCATCGATTGGCTAGGCGAAGCCAGTGCGAGACAATCC GGAGCTTTTCGCGGCGTGTTTCCGCTGCGGAACGAGTAATCCGCTTCTCA GTCCCTTCACGGCGGTCTCGCTGTCATCAAATTTGTCGCCCGCCGATTCG CTTACGGCATCGTCTACCAACAGGACTGGCTACGACCACAATCGCCTGCC TTGGGGTGATGCCTGCACGACATGTCGACATCCGTTCGTCCGGAGCTTTT TCAACTTCGAATCTCTGCCCCTCGTGGAGTTTGAGCCGGAGCCTGGGTAC GTATAATAAATGCGGTTTATAAACTCTAAACGGGGCGAAATAGACTTCTG GATGTATTTTGCCGTACCCCAGGCACTCTACCTTAGCAAGCAAAATATAT ATTTTACGATTAAAACTCCCACGGAGTGTTGTTTGTTGCTTCTCACACCT CGGATGCAACAAGCGTGAGACGAGGTCAGCTCGATTCTGTTCACTTCGCT TCGGTTCACTTCGCTTCGGTTCACTTCGATTTCAGACACCATAAATGACT GTGGCGGTGCCCCATCGGCGATCCCTTCTCCCAAAATGCCTCAGCGTTAC TTACATCAAAAAGCATCCAGTCATCGAAATGCACTCGAATCCCGTTTTTT TTTTTTACCTTTTCAGAGCTGACTGTCTGTGGCGTGACCAAGGGAGATTC CCATTTCGCATCTAGGCATTGTATGATACATATTGAATATCGATTTTCAT TTGTGAAGTCTACCTGCTGATTACATCGACACTCGTACTTTGACCCTCTG TCCTGTCAGGGATTGTTTTTGAGTAGACCCCTCTATGCGGAGGGGAGTTG TTGGGAAGTGGCGTTTACCTTGCCCGCACCATGCTGTGGTTGAGTATTTT AATTTGCTTGCGAAAATAATATCCCCTTAACCCGCCTTCCACAAGTAGCA TCGGGTTCGATAAGGCGTTGGAGTTGATCAGGACTAATGTACCTCAGGGG AGGCGGCACGGCCGATACGGTACCCATGCACAGGTTGGTGCGTCTCTTGA TCCAATAAACGAGCGCGACGTTTCGTGGATTGTACCGCCTTCTGCAGCAT ACATGTTGGTGTCGAAGAAGATTGCTCAGATATATATATATATATATATA AAAGGTCTTATTTTGCGGCAACGCTCTATGCGCGACGTGTAGCCCAACAG TCAGTTGAGGTGTAGTTCTTCATACTGCTGCTGCACGCCGCATGGTACCG AAAGGAAAACTCTGGGGATGAACCAACCATGCATCCTGTATCTTCAGGAC TGGAATTGTCAGAGAACATCGCATCTGGAACTGATAGCTATAACATAGCA CACCTCATACTGTATCCCTCGATATACCACCGTCCTATGCATGTTTTGAT GGTAGGAATGGCGTGAGGCTAAGGAGGGGGGCGCGGACGTAATGACGCTG GGTAGCGACGATATCGATGTCGGCGGAGAGGAGGACGACTCGGAGGAGAG AGCGGGCGTGTCAGGAGACGAGATCTTCAACCGTTGCATTAACACTGCAC TTGAGTTTCAAGAGGTCAGATGTCTCCGCGTTGTTATAGAGACACGGCTA TATTTGACTCGCGGAAATAAATTCGCGGCAGAGTTTCATGGTTACCGAGA GAAAAAAACGAAAATATTCATCTCCATACCCTCAATGGTTGAAAACTATT AGAAAACTACTTGTCAGGACTGGGCGGCGTAAATGACCTTAAAAATCAAT GAGTTGATCGATGTGATTGGCCTAACGGTGCGCAAAATCAACGTATAATG TAGTGGAGGGGAGAAATCCTGGCAATAAATAAGATTTGAGTTTTTTACTC GTCGTGTCAGCTGGGGCAGGCCTTAAAACAAAGGTGAAAAACAATACCCC ACGCTCTCTTAATCAATTGTGCTACATGTCACCCGCCCTCCGCCCTACGC TCCTCCTCCCGGCGTTGCCCACAGGAAACTACCCAGTATACCCCCGTGTT GGTGAGCTTTAGATGCCTCAAAGCTTTAAAGCGCGAGGAGGTCTTCCGCG TACCCCCGGGCACCTGCGGTCCCCGCGTCAAGCTTTTCAAGAACATGATG CCCGACATACCCCTGGCGTTGTCCCAGCCATGCGGGAGGTTCTTCCACGA GGGAGATTTTGAGTTTGCCTACCTCAGGGGAGGTCGCTGCCCATTCAGTC GAGTCAGTGATGTTGGTGACTACGGCAGCTGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13533:925..8009-

>mRNA_H-elongata_contig13533.2496.1 ID=mRNA_H-elongata_contig13533.2496.1|Name=mRNA_H-elongata_contig13533.2496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2862bp|location=Sequence derived from alignment at H-elongata_contig13533:925..8009- (Himanthalia elongata Himel1 dioecious)
ATGGACGATACCGCCAACGTCTTGGCCTTGTACGTCCGAAGCCAGATGGA
CGATACCGCCAACGTCTTGGCCTTGTACGTCCGAAGCCAGAACTGGTCGG
AGGCGGTGAAACTGTCACAAGAGCATAAGGGAACGTTCAACGACATTGTG
TTCTTGCCCTACGCTCTGTGGCTCGGGGACCAAGGAAGATTCGACGAGGC
CCTTGAGGCTTTCCACAAAGCAGGAAGGCGAGATCTGAGCGGCACGATGA
CTGCGCAACTAATAACTGGTCGGAGGCGGTGAAACTGTCACAAGAGCATA
AGGGAACGTTCAACGACATTGTGTTCTTGCCCTACGCTCTGTGGCTCGGG
GACCAAGGAAGATTCGACGAGGCCCTTGAGGCTTTCCACAAAGCAGGAAG
GCGAGATCTGAGCGGCACGATGACTGCGCAACTAATCTTGAACGCGGTGG
CGAAGACCAGGTTTGACGACGCCTCCTACTACTACTGGAAGTCTTCGAAG
GAAGCTTACTACGCTGCGGAGGACCCACAGAGCAGGCAAGATCTTGAACG
CGGTGGCGAAGACCAGGTTTGACGACGCCTCCTACTACTACTGGAAGTCT
TCGAAGGAAGCTTACTACGCTGCGGAGGACCCACAGAGCAGGCAAGATGA
AAGGCGACAAGCCCTGGCGCGTGCGTACGAGCATTCCCGGGCAGCGGACC
TGTACCACGCCTTCCACCACGTGCACTCCTTTACAACTGATCCCTTTACT
GATCTGCAGCCGGAGGTACTGCTGCAGGAAAGGCGACAAGCCCTGGCGCG
TGCGTACGAGCATTCCCGGGCAGCGGACCTGTACCACGCCTTCCACCACG
TGCACTCCTTTACAACTGATCCCTTTACTGATCTGCAGCCGGAGGTACTG
CTGCAGGCATCAAGGTTCCTCGTAAACTCGCTGGGAGATGCGGAGGCGCC
CAGAGGCATATCTAGAGCACATACTCTGTACACCCTAGCCAAACAGGCAT
CAAGGTTCCTCGTAAACTCGCTGGGAGATGCGGAGGCGCCCAGAGGCATA
TCTAGAGCACATACTCTGTACACCCTAGCCAAACAGGCAAAGGTACTCGG
CGCCTTCAAATTGGCGCGTTTTGCATATGATCGCCTCCAGAGGCAGAGGA
TGCCCCCCCTGTGGCAAGATCAGATTGACCTCGACATGCTTGCGGTACAG
GCAAAGGTACTCGGCGCCTTCAAATTGGCGCGTTTTGCATATGATCGCCT
CCAGAGGCAGAGGATGCCCCCCCTGTGGCAAGATCAGATTGACCTCGACA
TGCTTGCGGTACAGGCGAAGCCAGTGCGAGACAATCCGGAGCTTTTCGCG
GCGTGTTTCCGCTGCGGAACGAGTAATCCGCTTCTCAGTCCCTTCACGGC
GGTCTCGCTGTCATCAAATTTGTCGCCCGCCGATTCGCTTACGGCATCGT
CTACCAACAGGACTGGCTACGACCACAATCGCCTGCCTTGGGGTGATGCC
TGCACGACATGTCGACATCCGTTCGTCCGGAGCTTTTTCAACTTCGAATC
TCTGCCCCTCGTGGAGTTTGAGCCGGAGCCTGGGCGAAGCCAGTGCGAGA
CAATCCGGAGCTTTTCGCGGCGTGTTTCCGCTGCGGAACGAGTAATCCGC
TTCTCAGTCCCTTCACGGCGGTCTCGCTGTCATCAAATTTGTCGCCCGCC
GATTCGCTTACGGCATCGTCTACCAACAGGACTGGCTACGACCACAATCG
CCTGCCTTGGGGTGATGCCTGCACGACATGTCGACATCCGTTCGTCCGGA
GCTTTTTCAACTTCGAATCTCTGCCCCTCGTGGAGTTTGAGCCGGAGCCT
GGCATCGGGTTCGATAAGGCGTTGGAGTTGATCAGGACTAATGTACCTCA
GGGGAGGCGGCACGGCCGATACGGTACCCATGCACAGCATCGGGTTCGAT
AAGGCGTTGGAGTTGATCAGGACTAATGTACCTCAGGGGAGGCGGCACGG
CCGATACGGTACCCATGCACAGGAATGGCGTGAGGCTAAGGAGGGGGGCG
CGGACGTAATGACGCTGGGTAGCGACGATATCGATGTCGGCGGAGAGGAG
GACGACTCGGAGGAGAGAGCGGGCGTGTCAGGAGACGAGATCTTCAACCG
TTGCATTAACACTGCACTTGAGTTTCAAGAGGAATGGCGTGAGGCTAAGG
AGGGGGGCGCGGACGTAATGACGCTGGGTAGCGACGATATCGATGTCGGC
GGAGAGGAGGACGACTCGGAGGAGAGAGCGGGCGTGTCAGGAGACGAGAT
CTTCAACCGTTGCATTAACACTGCACTTGAGTTTCAAGAGGAAACTACCC
AGTATACCCCCGTGTTGGTGAGCTTTAGATGCCTCAAAGCTTTAAAGCGC
GAGGAGGTCTTCCGCGTACCCCCGGGCACCTGCGGTCCCCGCGTCAAGCT
TTTCAAGAACATGATGCCCGACATACCCCTGGCGTTGTCCCAGCCATGCG
GGAGGTTCTTCCACGAGGGAGATTTTGAGTTTGCCTACCTCAGGGGAGGT
CGCTGCCCATTCAGTCGAGTCAGTGATGTTGGTGACTACGGCAGCTGCTA
GGAAACTACCCAGTATACCCCCGTGTTGGTGAGCTTTAGATGCCTCAAAG
CTTTAAAGCGCGAGGAGGTCTTCCGCGTACCCCCGGGCACCTGCGGTCCC
CGCGTCAAGCTTTTCAAGAACATGATGCCCGACATACCCCTGGCGTTGTC
CCAGCCATGCGGGAGGTTCTTCCACGAGGGAGATTTTGAGTTTGCCTACC
TCAGGGGAGGTCGCTGCCCATTCAGTCGAGTCAGTGATGTTGGTGACTAC
GGCAGCTGCTAG
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