mRNA_H-elongata_contig135311.2495.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 229 bits (584), Expect = 1.670e-67 Identity = 137/424 (32.31%), Postives = 226/424 (53.30%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
+PT A +++R++ +M R D+ A+++++++ED+++ LPE + L K++YGL A W + + GF AD CVFR I G VVV +VV+VDD+ E ER + Q RDL + P+K+LG+ +Y C RD +AGTLK Q + GK + + +EF++ ++ P+RE++G+LMW AT RPDI+ A +A++ +P HWR+ L Y+ RT DLGIT+ R G + +++ADY + RRSVSGG VM GG +SWFSR QK +++++EY +LA+++ E+ FL+Q +A+N S+ ++H+ +++H +R+ + + I +V S AD LTK++ + H ++
Sbjct: 13 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 434
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 226 bits (575), Expect = 6.640e-66 Identity = 134/414 (32.37%), Postives = 219/414 (52.90%), Query Frame = 1
Query: 28 RMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQ-TDAEFEEMR-QIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
+M+ ++ L + DV+ A++ +E+EED+Y+ LP+ + L K++YGL A W ++ GF+ AD CVFR I G VV+++VV+VDD+ E ER ++ DL S P+K+LGE +Y C R++ G L Q A GG+++ S + +D + +E+ + P+RE+VG+LMW AT RPDI+ A +A++ +P HW +A L Y RT GI++ R EG L + +AD+ + RRSVSGG V GGA+SWFSR QK +++++EY AL ++V E+ FL+Q +A+N S+ ++H+ +++H +R+ ++ + + +V S +AD LTKS+ + H F+
Sbjct: 46 KMLAALACELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGA-DLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFV 458
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 229 bits (584), Expect = 9.160e-66 Identity = 137/424 (32.31%), Postives = 226/424 (53.30%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
+PT A +++R++ +M R D+ A+++++++ED+++ LPE + L K++YGL A W + + GF AD CVFR I G VVV +VV+VDD+ E ER + Q RDL + P+K+LG+ +Y C RD +AGTLK Q + GK + + +EF++ ++ P+RE++G+LMW AT RPDI+ A +A++ +P HWR+ L Y+ RT DLGIT+ R G + +++ADY + RRSVSGG VM GG +SWFSR QK +++++EY +LA+++ E+ FL+Q +A+N S+ ++H+ +++H +R+ + + I +V S AD LTK++ + H ++
Sbjct: 187 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYV 608
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL) HSP 1 Score: 223 bits (567), Expect = 3.040e-64 Identity = 141/417 (33.81%), Postives = 218/417 (52.28%), Query Frame = 1
Query: 22 NIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAA----------TIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQM------------------------AKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 1170
+IR+ LS+ A G+ QLDVD A+L A+++ED+Y+E PE + +V L KA+YGL AG W + GF+ +D C++ G I +YVDD++V T+ ++ + + + F IK+LG + L I+ DR L +Q ++T LSK+D P+ D + EM + PYR ++G L + A RPDI+FA L++F +NPGP HW +A + L+YL TRD GI+YG + E T + + +AD+GT D RRSVSG +MM GG + + ++ Q A +SS++EY AL+ E+ +++ M A N RT+H+ I++H VRD + V+++ YV + ADILTKS+ K +
Sbjct: 86 SIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGRAGGDTTY-ICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRFE 500
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 231 bits (590), Expect = 6.120e-64 Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
SP P+ A+I+++L++ G DV AY A ++E+++++LP D ++ ++A+YGL +G W D GF+ +ADPCVFR+++ VVV++IV+YVDD+LVA E D E+ + L FP K+LGE ++ C I RD AGTL+ Q I + + K+ S+ + P D E EE + P RE +G++MW +T RPD+SFA +A+ P HW + QK L YL TRDLGITY R G G L+ +++A Y D RRSVSG A + G +S S+ Q + + +S+++EY A E V E F++ + +N SS RT+H+ ++ H +R G + +++V + E AD+LTK++ ++Q H + L
Sbjct: 823 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1241
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 231 bits (590), Expect = 7.530e-64 Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
SP P+ A+I+++L++ G DV AY A ++E+++++LP D ++ ++A+YGL +G W D GF+ +ADPCVFR+++ VVV++IV+YVDD+LVA E D E+ + L FP K+LGE ++ C I RD AGTL+ Q I + + K+ S+ + P D E EE + P RE +G++MW +T RPD+SFA +A+ P HW + QK L YL TRDLGITY R G G L+ +++A Y D RRSVSG A + G +S S+ Q + + +S+++EY A E V E F++ + +N SS RT+H+ ++ H +R G + +++V + E AD+LTK++ ++Q H + L
Sbjct: 1202 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1620
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 231 bits (590), Expect = 7.700e-64 Identity = 146/426 (34.27%), Postives = 228/426 (53.52%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
SP P+ A+I+++L++ G DV AY A ++E+++++LP D ++ ++A+YGL +G W D GF+ +ADPCVFR+++ VVV++IV+YVDD+LVA E D E+ + L FP K+LGE ++ C I RD AGTL+ Q I + + K+ S+ + P D E EE + P RE +G++MW +T RPD+SFA +A+ P HW + QK L YL TRDLGITY R G G L+ +++A Y D RRSVSG A + G +S S+ Q + + +S+++EY A E V E F++ + +N SS RT+H+ ++ H +R G + +++V + E AD+LTK++ ++Q H + L
Sbjct: 1365 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKL 1783
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.030e-62 Identity = 136/424 (32.08%), Postives = 226/424 (53.30%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDSPQTDAEFEEMRQI---PYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQKHAKFL 1188
+PT A +++R++ +M R D+ A+++++++ED+++ LPE + L K++YGL A W + + GF AD CVFR I G VVV +VV+VDD+ E ER + Q RDL + P+K+LG+ +Y C RD +AGTLK Q + GK + + +EF++ ++ P+RE++G+LMW AT RPDI+ A +A++ +P HWR+ L Y+ RT DLGIT+ R G + +++ADY + RRSVSGG VM GG +SWFSR QK +++++EY +LA+++ E+ FL+Q +A+N S+ ++H+ +++H +R+ + + I +V S A+ LTK++ + H ++
Sbjct: 708 APTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCD-QFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKL-SEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYV 1129
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.630e-62 Identity = 143/414 (34.54%), Postives = 222/414 (53.62%), Query Frame = 1
Query: 1 SPTPAQANIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTAATIAAAAGGKALSKSDS-PQTDA----EFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWFSRIQKVTAAASSKSEYGALAEMVNELCFLQQ-------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSV 1152
SP P+ A+I+++L++ G DV AY A ++E+++++LP D ++ ++A+YGL +G W D GF+ +ADPCVFR+++ VVV++IV+YVDD+LVA E D E+ + L FP K+LGE ++ C I RD AGTL+ Q I + + K+ S+ + P D E EE + P RE +G++MW +T RPD+SFA +A+ P HW + QK L YL TRDLGITY R G G L+ +++A Y D RRSVSG A + G +S S+ Q + + +S+++EY A E V E F++ + +N SS RT+H+ ++ H +R G + +++V + E AD+LTK++
Sbjct: 1222 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDS---MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR--GSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 216 bits (549), Expect = 2.190e-62 Identity = 133/418 (31.82%), Postives = 226/418 (54.07%), Query Frame = 1
Query: 22 NIRMVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLWSNKVRDRARGEGFQISQADPCVFRRILHGVVVVVIVVYVDDLLVASETERDEEQAVRDLYSSFPIKDLGEASYYLECHIMRDRNAGTLKFDQHQCIQTA----------ATIAAAAGGKALSKSDSPQTDAEFEEMRQIPYREIVGTLMWAATMIRPDISFAAYQLAKFNDNPGPTHWRSAQKALQYLWRTRDLGITYGREPGEGTKLSAWINADYGTCPDTRRSVSGGAVMMAGGAMSWF-SRIQKVTAAASSKSEYGALAEMVNELCFLQQ------------------------MAKNRFSSRRTRHVGIKNHIVRDAIDGGVVQIEYVRSGEHQADILTKSVDVKTIQ 1170
+IR+VLS++ A+ + QLD D A+ ++++E +++E+P ++ + L KA+YGL A W + GF+ AD CV+ ++ V V + YVDD+++A++T + + L S+F +K+LGEA + L I DR GTL Q + + A + G LSK+ SP TDAE E+MR PY+ ++G+L++ T RPD+++ QL++F +NPG HW++A + L+YL T+D GI Y G+ L + +AD+G+ D RRSVSG +MM GGA F S+ Q+ A +S+++EY AL+ E+ + + +A N + RT+ V I++H + + + ++ ++YV + + AD+LTK++ K ++
Sbjct: 3 SIRVVLSVVVAMAYVTEQLDADTAFPNSDLKEQVFMEVPYGITNAANMMCKLDKAIYGLKQAASAWHQTIHAVFVKIGFRSCGADKCVYVKVSKDNYVYVCL-YVDDMIIAAKTSEEINEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAEREDMRGKPYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSGNNGKAV-LEVYTDADWGSNLDGRRSVSG-IMMMIGGAPGVFKSKYQRTVALSSAEAEYMALSLCTQEVLWTRATLKDLGHEQVGATQVWEDNQGAIALASNAGYNARTKRVDIRHHYIGENVARDIITVDYVGTEDQLADLLTKALGTKRLK 417 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135311.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135311.2495.1 >prot_H-elongata_contig135311.2495.1 ID=prot_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=386bp MVLSMIAALGWEARQLDVDMAYLEAEVEEDIYVELPEAYRDSRKQVGLLKback to top mRNA from alignment at H-elongata_contig135311:13..1299+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135311.2495.1 ID=mRNA_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-elongata_contig135311:13..1299+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135311:13..1299+ >mRNA_H-elongata_contig135311.2495.1 ID=mRNA_H-elongata_contig135311.2495.1|Name=mRNA_H-elongata_contig135311.2495.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2316bp|location=Sequence derived from alignment at H-elongata_contig135311:13..1299+ (Himanthalia elongata Himel1 dioecious)back to top |