mRNA_H-elongata_contig1353.2494.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 212 bits (540), Expect = 4.740e-62 Identity = 108/209 (51.67%), Postives = 140/209 (66.99%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
+IKIV+V WQI+TQFS V +V YP YE FL LN+ N N G ILS SCV++TNFY RL+ TIGP+V+LG LA+TY + RN HS ++ K KHLS+ +F++F+VYSSVS+ IFQTF+C+ +D GV YLRADY L CST TH YAG M VYP GIPA F L +NR + ++ A+ G + + + +DLWAP
Sbjct: 63 SIKIVLVAWQIVTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVD--ANGGSTATAKSLGNLQPMRDLWAP 269
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 220 bits (560), Expect = 3.860e-61 Identity = 110/208 (52.88%), Postives = 143/208 (68.75%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWA 626
+IKIVVV WQI+TQFS V +V YP YESFL LNV N +LG +LS+SC+++ NFY RL TT+GP+V+ G LA TY + RN HS M+A KSKHLS+ +F+ F+VYSSVS+ IFQTF+C+ +D GV YLRADY L CSTG H M YAG M LVYP+GIP V++W L +NR + + + S R + + +DLW+
Sbjct: 739 SIKIVVVAWQIVTQFSSVVNVVYPDIYESFLAVLNVVNFDLGFLLSVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGT--SGNCLGGAPRLDHLQPMRDLWS 944
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.750e-60 Identity = 104/209 (49.76%), Postives = 137/209 (65.55%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
+IKIV+V WQI+TQFS V +V YP YE FL LNV N NLG ILS+SC++++NFY TI P+V+ G A+TY + RN HS M+A KSKHLS+ +F++F+VYSSV + IFQTF+C+ +D+G+ YLRADY L C TG H+ M YAG M VYP+GIPA +AW L R + + A F + + +DLWAP
Sbjct: 28 SIKIVLVAWQIVTQFSSVLNVVYPGVYERFLSVLNVVNFNLGFILSVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVG--APNNFLERVPELDHLQPMRDLWAP 234
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 206 bits (524), Expect = 1.210e-59 Identity = 111/209 (53.11%), Postives = 135/209 (64.59%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
AIKI++V WQI+TQF+ V VEYP YE FL ALN+ N NLG LS C++ETNFY RL +TI P+ +LG LA + A N HS MR KHLS+ +F++F +YSSVS+ IFQTF+C+ +D V YLRADY L CST TH YAG M LVYPIGIPAVFAW L +NR + S G + PE P+ KDLW P
Sbjct: 43 AIKIILVVWQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRS----GGTTTPENLRPM---KDLWEP 244
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 212 bits (539), Expect = 3.660e-58 Identity = 107/209 (51.20%), Postives = 142/209 (67.94%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
A+KIVVV WQI+TQ+S VA VEYP AY+ FL ++V NL+LG ILS +CV +TNFY+RL++ TIGP+++LG+L TY A RN H AMR V+ +HLSV +F++F++Y++VSY IF+TF+CD +D G +YLRADY L C T H + YAG LVYP+GIP VF W LF NR ++ Q + E + A DLW P
Sbjct: 719 AVKIVVVVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELK----------QEDRESQAELRPAADLWEP 917
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.250e-57 Identity = 105/209 (50.24%), Postives = 142/209 (67.94%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
A+KIVVV WQI+TQ+S VA +EYP AY+ FL ++V NL+LG ILS +CV +TNFY+RL++ TIGP+++LG+L TY A RN H AMR V+ +HLSV +F++F++Y++VSY IF+TF+CD +D G +YLRADY L C T H + YAG LVYP+GIP +F W LF NR ++ Q + E + A DLW P
Sbjct: 700 AVKIVVVVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELK----------QEDREGQAELRPAADLWEP 898
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 198 bits (504), Expect = 5.370e-57 Identity = 108/202 (53.47%), Postives = 130/202 (64.36%), Query Frame = 3
Query: 27 WQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNR-DSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
WQI+TQF+ V VEYP YE FL ALN+ N NLG LS CV+ETNFY RL +T+ P+ +LG LA T+ A N HS MR KHLS+ +F++F YSSVS+ IFQTF+C+ +D V YLRADY L CST TH YAG M LVYPIGIPAVFAW L +NR D + +S +T PE P+ KDLW P
Sbjct: 29 WQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGFFLSFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERSSGTAT-----PENLRPM---KDLWEP 222
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.460e-54 Identity = 107/209 (51.20%), Postives = 139/209 (66.51%), Query Frame = 3
Query: 3 AIKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAP 629
AIKIVVV WQI+TQ+S VA VEYP AY+ FL ++V NL+LG ILSL+CV +T+FY+RL+LTTI P V+LG+L TY AM VK +HLSV +F++F++Y++VSY IF+TF+CD +D G +YLR+DY L C T TH + YAG M LVYP+GIP VF W LF +R ++ Q ER + A DLW P
Sbjct: 724 AIKIVVVVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSLACVCDTDFYDRLLLTTICPAVVLGLLGCTY-----------LAMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELK----------QEGRERRAVLKPAADLWEP 911
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.170e-53 Identity = 102/206 (49.51%), Postives = 138/206 (66.99%), Query Frame = 3
Query: 6 IKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLW 623
+KIVVV WQIITQF +A YP Y+ FL AL NL++G ILS SCV+ T+F++RL++ TIGP+V+L +LA+T+ RN S A+RAVK+KHLS +F++F +YSSVS+ +FQTF+CD +D GV+YLRADY L C T + F YA M VYPIGIPA FAWLL +NR ++ +++ +R + DLW
Sbjct: 712 VKIVVVAWQIITQFGAIAGFVYPEEYQDFLNALTPVNLDIGFILSYSCVVITDFFDRLLIATIGPVVVLALLALTFVVGRKRNIDSEAAVRAVKNKHLSAALFVMFFIYSSVSFTVFQTFVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQ----------KADRDRLANLQPLGDLW 907
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 179 bits (455), Expect = 4.990e-47 Identity = 94/213 (44.13%), Postives = 139/213 (65.26%), Query Frame = 3
Query: 6 IKIVVVTWQIITQFSGVASVEYPPAYESFLGALNVFNLNLGSILSLSCVLETNFYERLVLTTIGPIVMLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFQTFICDLMDSGVAYLRADYGLECSTGTHRGFMTYAGFMALVYPIGIPAVFAWLLFTNRDSIENLNSLASTGFQSEPERFNPVDAAKDLWAPNRSAL 644
+KI+VV WQI+TQF+ A+V YP Y+ FL L+VFN ++ +LS CV++ +F++RL+L+TIGPI+ L LA TYR N + ++ V +H+S+V+ L+F+VYS VS ++FQTF CD ++ G YLRADY +EC + H+GF YAGFM L+YP+GIPA + LL +RD +E + +P R V + +LW P R ++
Sbjct: 677 LKILVVAWQIVTQFTSAANVTYPDVYQRFLNGLDVFNFDISWVLSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEK-----DPDGREDPPR---VASISNLWQPYRPSV 881 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1353.2494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1353.2494.1 >prot_H-elongata_contig1353.2494.1 ID=prot_H-elongata_contig1353.2494.1|Name=mRNA_H-elongata_contig1353.2494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp MLGVLAITYRFALIRNGHSICAMRAVKSKHLSVVIFLLFIVYSSVSYMIFback to top mRNA from alignment at H-elongata_contig1353:895..2106- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1353.2494.1 ID=mRNA_H-elongata_contig1353.2494.1|Name=mRNA_H-elongata_contig1353.2494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1212bp|location=Sequence derived from alignment at H-elongata_contig1353:895..2106- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1353:895..2106- >mRNA_H-elongata_contig1353.2494.1 ID=mRNA_H-elongata_contig1353.2494.1|Name=mRNA_H-elongata_contig1353.2494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig1353:895..2106- (Himanthalia elongata Himel1 dioecious)back to top |