mRNA_H-elongata_contig135294.2492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135294.2492.1
Unique NamemRNA_H-elongata_contig135294.2492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135294.2492.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 5.440e-23
Identity = 51/81 (62.96%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    1 TKQPRLLYTIRNPLLHKASIFFESVCRFGQHIKE-GKIDQEEATRDRT----AKNPMYTFCRDAAMWLDSPMFFKVYRNMQ 228
            TK PR+L TIRNPLLHKASIFFESVCRFGQHI + G IDQE AT  R      +   Y FCRD  MW+ S  F KVYRN +
Sbjct:  180 TKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFE 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135294.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCA8_9PHAE5.440e-2362.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135294contigH-elongata_contig135294:798..1779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.6e-18
Seed eggNOG ortholog2880.D8LM89
EggNOG OGs2F011@1,2T197@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.132622-CDS-H-elongata_contig135294:797..9251622929803.132622-CDS-H-elongata_contig135294:797..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135294 798..925 -
1691679163.355193-CDS-H-elongata_contig135294:797..9251691679163.355193-CDS-H-elongata_contig135294:797..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135294 798..925 -
1622929803.14745-CDS-H-elongata_contig135294:1679..17791622929803.14745-CDS-H-elongata_contig135294:1679..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135294 1680..1779 -
1691679163.366475-CDS-H-elongata_contig135294:1679..17791691679163.366475-CDS-H-elongata_contig135294:1679..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135294 1680..1779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135294.2492.1prot_H-elongata_contig135294.2492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135294 798..1779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135294.2492.1

>prot_H-elongata_contig135294.2492.1 ID=prot_H-elongata_contig135294.2492.1|Name=mRNA_H-elongata_contig135294.2492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
TKQPRLLYTIRNPLLHKASIFFESVCRFGQHIKEGKIDQEEATRDRTAKN
PMYTFCRDAAMWLDSPMFFKVYRNMQ
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mRNA from alignment at H-elongata_contig135294:798..1779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135294.2492.1 ID=mRNA_H-elongata_contig135294.2492.1|Name=mRNA_H-elongata_contig135294.2492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at H-elongata_contig135294:798..1779- (Himanthalia elongata Himel1 dioecious)
ACCAAGCAGCCGCGGCTGCTCTACACCATCCGAAATCCACTCCTGCACAA
GGCTTCTATCTTCTTCGAGTCCGTCTGCAGATTCGGCCAGCACATCAAGG
GTTGAGTGCTCGTCTGGACCTACTCGCAAAAGCTTGTCGCATCGTTTTTT
TAGCGCCGCGGGATAAAAAATAAGAAAAAGGGGAAGAGCGCGCGCGCGGT
CTGGCAATAGTTGTGGGTTCTCTCTGTCGCTCTTCTTCACGATATCAGTT
GGACACGGCGGGAGCAGCAGCAGTAGCAGAAGCGGGAACTGTGATGTGGT
AGGCACGGGTGTTGAACATACAATCGATGATCCCCCGCCGCCCCGCCCCT
CGTTTCTGTCTCCTCCCGAAGACGGGGCTAAGGGGTGCAATAATGTAGAA
CACCCCTCCCCCTCTTTCCTTCGAAAAATTATCATATTTTATTTCGGCCC
CCCACCAGTATTTTACTCAGCGCAGGTTCTCTCTCTCTCTATCTATGTGT
GTGTATGTGTGTGTGTGTATGTGTGTGTGTGTATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTCATTTCTTTGTCAGTAGTAATAATCATCGACATGGA
TATCGTTTTTGGCCTTCGACCCTCCCAATCTGCTTGTTAACGCCCGCCTC
ATCCCCTATTTTCCGTGTGTCCTCCTTCCCTTCCGAGGACGCGTGGTCAA
TAAACTAACAGCCAAGGCAGGCAAAACTTTAGTATGACCCCGTCGTCGTC
GTCGTTCCCGTCCCCGTTCCTCACCGAACCCTCCACACGCGGCTTCCCTT
GACGCAAGTTTGTCCTCACGCTCTTGCGTGTGTCGTTTCCGTGTTGCCTC
TTAGAGGGAAAGATCGATCAGGAGGAAGCCACGCGAGATCGAACCGCGAA
AAACCCGATGTACACCTTTTGTCGGGATGCGGCGATGTGGTTAGACTCGC
CGATGTTCTTCAAGGTCTACCGGAACATGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig135294:798..1779-

>mRNA_H-elongata_contig135294.2492.1 ID=mRNA_H-elongata_contig135294.2492.1|Name=mRNA_H-elongata_contig135294.2492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig135294:798..1779- (Himanthalia elongata Himel1 dioecious)
ACCAAGCAGCCGCGGCTGCTCTACACCATCCGAAATCCACTCCTGCACAA
GGCTTCTATCTTCTTCGAGTCCGTCTGCAGATTCGGCCAGCACATCAAGG
ACCAAGCAGCCGCGGCTGCTCTACACCATCCGAAATCCACTCCTGCACAA
GGCTTCTATCTTCTTCGAGTCCGTCTGCAGATTCGGCCAGCACATCAAGG
AGGGAAAGATCGATCAGGAGGAAGCCACGCGAGATCGAACCGCGAAAAAC
CCGATGTACACCTTTTGTCGGGATGCGGCGATGTGGTTAGACTCGCCGAT
GTTCTTCAAGGTCTACCGGAACATGCAGAGGGAAAGATCGATCAGGAGGA
AGCCACGCGAGATCGAACCGCGAAAAACCCGATGTACACCTTTTGTCGGG
ATGCGGCGATGTGGTTAGACTCGCCGATGTTCTTCAAGGTCTACCGGAAC
ATGCAG
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