mRNA_H-elongata_contig135281.2491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135281.2491.1
Unique NamemRNA_H-elongata_contig135281.2491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135281.2491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135281contigH-elongata_contig135281:1035..1675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.0719922-UTR-H-elongata_contig135281:1034..13061622929803.0719922-UTR-H-elongata_contig135281:1034..1306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135281 1035..1306 +
1691679163.3382428-UTR-H-elongata_contig135281:1034..13061691679163.3382428-UTR-H-elongata_contig135281:1034..1306Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135281 1035..1306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929803.085587-CDS-H-elongata_contig135281:1306..16751622929803.085587-CDS-H-elongata_contig135281:1306..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135281 1307..1675 +
1691679163.346422-CDS-H-elongata_contig135281:1306..16751691679163.346422-CDS-H-elongata_contig135281:1306..1675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135281 1307..1675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135281.2491.1prot_H-elongata_contig135281.2491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135281 1307..1675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135281.2491.1

>prot_H-elongata_contig135281.2491.1 ID=prot_H-elongata_contig135281.2491.1|Name=mRNA_H-elongata_contig135281.2491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MWYLPLHSYTRIYFLRYSEIMFSMCVEAGAGTSIYHPPLGRGITNDVLFT
VCFVCWVLGSGKIIYIYQYMCAKPVVSRSSACFLFLFLFLSRFLNLTNRY
KLCKVVPKPSHNMTTSTPYLPPF
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mRNA from alignment at H-elongata_contig135281:1035..1675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135281.2491.1 ID=mRNA_H-elongata_contig135281.2491.1|Name=mRNA_H-elongata_contig135281.2491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig135281:1035..1675+ (Himanthalia elongata Himel1 dioecious)
GTTACCTTTCGGCTTCTTTAGTTTGAATCCTTTAAAATCTCGCCGCTCGC
GCCCTCGATCACGCTTGCCGAGCTCTACTTTCATATTCACGACAGCTACA
CAAATGAGATCGAGATTTCTCGGTATTTTGAGTTCACGCGTCCAACGCTA
CCATAATATCACACCGACAGGTACGGACTACTGCCAACAACCGCGCAGGA
GACAACACGCCTCGACGATGGAACTCCTTCCACGCGCCGCACGCTGTAAA
GGCAAGGGAAAAACGCCGCAAGATGTGGTATCTGCCTCTGCATTCATACA
CACGCATTTATTTTTTACGCTACAGCGAGATTATGTTTAGCATGTGTGTC
GAGGCCGGAGCGGGGACATCGATCTATCACCCCCCCCTAGGGCGAGGAAT
CACAAACGACGTGTTATTTACGGTGTGCTTTGTCTGCTGGGTACTAGGGA
GTGGGAAAATAATATATATATATCAATACATGTGCGCGAAGCCTGTCGTG
TCGAGGAGTTCCGCATGTTTTTTGTTTTTGTTTTTGTTTTTGTCGAGATT
CCTAAATTTAACAAACAGATACAAGCTTTGCAAAGTCGTACCCAAACCAT
CACACAATATGACAACCTCGACTCCCTATCTGCCACCCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig135281:1035..1675+

>mRNA_H-elongata_contig135281.2491.1 ID=mRNA_H-elongata_contig135281.2491.1|Name=mRNA_H-elongata_contig135281.2491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig135281:1035..1675+ (Himanthalia elongata Himel1 dioecious)
ATGTGGTATCTGCCTCTGCATTCATACACACGCATTTATTTTTTACGCTA
CAGCGAGATTATGTTTAGCATGTGTGTCGAGGCCGGAGCGGGGACATCGA
TCTATCACCCCCCCCTAGGGCGAGGAATCACAAACGACGTGTTATTTACG
GTGTGCTTTGTCTGCTGGGTACTAGGGAGTGGGAAAATAATATATATATA
TCAATACATGTGCGCGAAGCCTGTCGTGTCGAGGAGTTCCGCATGTTTTT
TGTTTTTGTTTTTGTTTTTGTCGAGATTCCTAAATTTAACAAACAGATAC
AAGCTTTGCAAAGTCGTACCCAAACCATCACACAATATGACAACCTCGAC
TCCCTATCTGCCACCCTTTATGTGGTATCTGCCTCTGCATTCATACACAC
GCATTTATTTTTTACGCTACAGCGAGATTATGTTTAGCATGTGTGTCGAG
GCCGGAGCGGGGACATCGATCTATCACCCCCCCCTAGGGCGAGGAATCAC
AAACGACGTGTTATTTACGGTGTGCTTTGTCTGCTGGGTACTAGGGAGTG
GGAAAATAATATATATATATCAATACATGTGCGCGAAGCCTGTCGTGTCG
AGGAGTTCCGCATGTTTTTTGTTTTTGTTTTTGTTTTTGTCGAGATTCCT
AAATTTAACAAACAGATACAAGCTTTGCAAAGTCGTACCCAAACCATCAC
ACAATATGACAACCTCGACTCCCTATCTGCCACCCTTT
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