mRNA_H-elongata_contig135248.2489.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135248.2489.1
Unique NamemRNA_H-elongata_contig135248.2489.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135248.2489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135248contigH-elongata_contig135248:870..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001310.1
Exons2
Model size574
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135248.2489.1prot_H-elongata_contig135248.2489.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135248 870..1494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.7937913-CDS-H-elongata_contig135248:869..9771622929802.7937913-CDS-H-elongata_contig135248:869..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135248 870..977 +
1691679163.2443635-CDS-H-elongata_contig135248:869..9771691679163.2443635-CDS-H-elongata_contig135248:869..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135248 870..977 +
1622929802.814571-CDS-H-elongata_contig135248:1314..14941622929802.814571-CDS-H-elongata_contig135248:1314..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135248 1315..1494 +
1691679163.2525961-CDS-H-elongata_contig135248:1314..14941691679163.2525961-CDS-H-elongata_contig135248:1314..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135248 1315..1494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.8329124-UTR-H-elongata_contig135248:1494..17801622929802.8329124-UTR-H-elongata_contig135248:1494..1780Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135248 1495..1780 +
1691679163.262312-UTR-H-elongata_contig135248:1494..17801691679163.262312-UTR-H-elongata_contig135248:1494..1780Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135248 1495..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135248.2489.1

>prot_H-elongata_contig135248.2489.1 ID=prot_H-elongata_contig135248.2489.1|Name=mRNA_H-elongata_contig135248.2489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MDDRTRKTEQAKADTALRRQLFARQREHKLAARQLEAERELSARAFEAED
RKAAQALKEARKSAIEANKREERKLRAEALAHVSISFSDSLGVLR*
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mRNA from alignment at H-elongata_contig135248:870..1780+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135248.2489.1 ID=mRNA_H-elongata_contig135248.2489.1|Name=mRNA_H-elongata_contig135248.2489.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=911bp|location=Sequence derived from alignment at H-elongata_contig135248:870..1780+ (Himanthalia elongata Himel1 dioecious)
ATGGATGATCGGACTCGAAAGACCGAGCAAGCTAAGGCCGACACGGCCCT
CCGGCGCCAGCTGTTCGCGAGACAGAGAGAACACAAGCTAGCCGCCCGTC
AGCTCGAGGTGGGGGCATATGTCGGCGCACGCTCAGGTCGTGCAACCTGA
CCTGTTTCAGAATCCCATGGTTCGATGTGTCATTGTCTTAGTTGCTTACA
TTTTTGTTATTTTTCGTATTGAATTAATGCAGATAATCCCCCCAACCCTG
TCCCCTAGCCCTTCGGAATCCTTCTTTTTATCATTCACAGGATGCACAAG
AGTCTGCTAGGTACATTCCTCCACAGCCGAGCGACAATGTGAACCCTGTC
GCCGTGCTGTTTACGCTCTTTGGTTAACGTCTACTTCTGTGATCGGCCGT
TTGCTTGGCGTTTGCTTGTTGTCCCGTTCCATCGCTACGCCCAAGGCGGA
ACGGGAACTGTCGGCGAGGGCCTTTGAGGCCGAGGATCGGAAGGCAGCTC
AAGCTCTGAAGGAAGCACGGAAATCCGCCATCGAAGCGAACAAGAGGGAG
GAGAGGAAATTGAGGGCGGAGGCCCTCGCCCACGTTAGTATATCATTCTC
TGATTCATTAGGAGTACTCCGCTGACTTACAGTACTGTAGGTTTGATCAG
CCAGGCGCTAGTGTCCCTCTTGTCCTTGAACATGAAAGCTCTAGTAGAGC
GGTCGACGGATGAGTGGAGTTATAGAGAGTTGTGTACCGTTTTGACGGCT
ATTCAACACCTTTAGCAACTCTCAGGGATCCGTTTTTCTGGGGGCATATT
TTTAATACACATCACCCGTAACATGTTTTTACATAACGTACTTTCAGGAG
AAGAATCTTAAGGCGGCGGATGAGGCGCGAAAACGCCAGCTTTTTGCCGA
GGAGTACGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig135248:870..1780+

>mRNA_H-elongata_contig135248.2489.1 ID=mRNA_H-elongata_contig135248.2489.1|Name=mRNA_H-elongata_contig135248.2489.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig135248:870..1780+ (Himanthalia elongata Himel1 dioecious)
ATGGATGATCGGACTCGAAAGACCGAGCAAGCTAAGGCCGACACGGCCCT
CCGGCGCCAGCTGTTCGCGAGACAGAGAGAACACAAGCTAGCCGCCCGTC
AGCTCGAGATGGATGATCGGACTCGAAAGACCGAGCAAGCTAAGGCCGAC
ACGGCCCTCCGGCGCCAGCTGTTCGCGAGACAGAGAGAACACAAGCTAGC
CGCCCGTCAGCTCGAGGCGGAACGGGAACTGTCGGCGAGGGCCTTTGAGG
CCGAGGATCGGAAGGCAGCTCAAGCTCTGAAGGAAGCACGGAAATCCGCC
ATCGAAGCGAACAAGAGGGAGGAGAGGAAATTGAGGGCGGAGGCCCTCGC
CCACGTTAGTATATCATTCTCTGATTCATTAGGAGTACTCCGCTGAGCGG
AACGGGAACTGTCGGCGAGGGCCTTTGAGGCCGAGGATCGGAAGGCAGCT
CAAGCTCTGAAGGAAGCACGGAAATCCGCCATCGAAGCGAACAAGAGGGA
GGAGAGGAAATTGAGGGCGGAGGCCCTCGCCCACGTTAGTATATCATTCT
CTGATTCATTAGGAGTACTCCGCTGA
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