mRNA_H-elongata_contig135241.2488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135241.2488.1
Unique NamemRNA_H-elongata_contig135241.2488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135241.2488.1 vs. uniprot
Match: A0A177WNW1_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WNW1_BATDL)

HSP 1 Score: 51.2 bits (121), Expect = 4.100e-6
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 2 
Query:    2 RPEFLMIWGVYAVTYVAANMIITTCEQSQVDDTWPKLIGTSAVNIASCVAK 154
            +P FL+IWGVY+ TY+AAN I   C++  V    PK IG+S  N+   V K
Sbjct:  146 QPSFLLIWGVYSGTYIAANSIQAICDRLFVPWQIPKFIGSSVANVGLSVLK 196
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BLAST of mRNA_H-elongata_contig135241.2488.1 vs. uniprot
Match: W7TN06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN06_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.440e-5
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 2 
Query:    2 RPEFLMIWGVYAVTYVAANMIITTCEQSQVDDTWPKLIGTSAVNIASCVAK 154
            RPE LM+W VY VTY AAN++ TT +        P+L+ T+  N+ + +AK
Sbjct:   98 RPEVLMVWTVYGVTYFAANLVNTTSKAYDYQADVPRLLATTTANMGAGIAK 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135241.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A177WNW1_BATDL4.100e-647.06Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
W7TN06_9STRA1.440e-543.14Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135241contigH-elongata_contig135241:1508..1661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size155
Cds size138
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.731642-UTR-H-elongata_contig135241:1507..15231622929802.731642-UTR-H-elongata_contig135241:1507..1523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135241 1508..1523 +
1691679163.2247965-UTR-H-elongata_contig135241:1507..15231691679163.2247965-UTR-H-elongata_contig135241:1507..1523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig135241 1508..1523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.7453198-CDS-H-elongata_contig135241:1523..16611622929802.7453198-CDS-H-elongata_contig135241:1523..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135241 1524..1661 +
1691679163.2354279-CDS-H-elongata_contig135241:1523..16611691679163.2354279-CDS-H-elongata_contig135241:1523..1661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135241 1524..1661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135241.2488.1prot_H-elongata_contig135241.2488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135241 1524..1661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135241.2488.1

>prot_H-elongata_contig135241.2488.1 ID=prot_H-elongata_contig135241.2488.1|Name=mRNA_H-elongata_contig135241.2488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MIWGVYAVTYVAANMIITTCEQSQVDDTWPKLIGTSAVNIASCVAK
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mRNA from alignment at H-elongata_contig135241:1508..1661+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135241.2488.1 ID=mRNA_H-elongata_contig135241.2488.1|Name=mRNA_H-elongata_contig135241.2488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=154bp|location=Sequence derived from alignment at H-elongata_contig135241:1508..1661+ (Himanthalia elongata Himel1 dioecious)
CCGGCCGGAGTTTTTGATGATCTGGGGTGTGTACGCGGTAACGTACGTTG
CCGCAAACATGATCATCACGACTTGTGAGCAAAGTCAGGTGGACGACACG
TGGCCAAAGCTCATCGGCACTAGCGCGGTCAACATCGCCAGTTGTGTCGC
AAAG
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Coding sequence (CDS) from alignment at H-elongata_contig135241:1508..1661+

>mRNA_H-elongata_contig135241.2488.1 ID=mRNA_H-elongata_contig135241.2488.1|Name=mRNA_H-elongata_contig135241.2488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig135241:1508..1661+ (Himanthalia elongata Himel1 dioecious)
ATGATCTGGGGTGTGTACGCGGTAACGTACGTTGCCGCAAACATGATCAT
CACGACTTGTGAGCAAAGTCAGGTGGACGACACGTGGCCAAAGCTCATCG
GCACTAGCGCGGTCAACATCGCCAGTTGTGTCGCAAAGATGATCTGGGGT
GTGTACGCGGTAACGTACGTTGCCGCAAACATGATCATCACGACTTGTGA
GCAAAGTCAGGTGGACGACACGTGGCCAAAGCTCATCGGCACTAGCGCGG
TCAACATCGCCAGTTGTGTCGCAAAG
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