mRNA_H-elongata_contig135222.2487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135222.2487.1
Unique NamemRNA_H-elongata_contig135222.2487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: D8LSB2_ECTSI (Sacchrp_dh_NADP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.360e-43
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:    7 QVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            +VI+TTVGPY  YGSK+V  C   GVH CDLTGES WV+ +IDKHH++A RTGAKIV SCGFDSIPAD+GT  M++YMKRTHG+SPDDVRY F    GG+
Sbjct:   89 KVIITTVGPYAHYGSKVVAACSAAGVHCCDLTGESLWVKGLIDKHHEEAERTGAKIVPSCGFDSIPADLGTLMMVEYMKRTHGLSPDDVRYYFGASKGGV 188          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A3A8J8B6_9DELT (Saccharopine dehydrogenase n=5 Tax=Myxococcaceae TaxID=31 RepID=A0A3A8J8B6_9DELT)

HSP 1 Score: 128 bits (322), Expect = 2.350e-33
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R +V+++TVGPYNRYGS+LV  C R G   CDLTGE  W+R+MID H  QA  TGA+IV +CGFDSIP+D+G   + DYM+  HG   D VRY  T + GG 
Sbjct:   85 RTRVVISTVGPYNRYGSELVAACARAGTDYCDLTGEVHWMRKMIDAHDTQARETGARIVHTCGFDSIPSDLGVLMVQDYMRERHGGHCDQVRYHLTHMRGGF 186          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A6S9JTW0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JTW0_HETAK)

HSP 1 Score: 127 bits (320), Expect = 1.240e-32
Identity = 50/102 (49.02%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R +V+LTTVGPY +YG++LV  CV  G+  CDLTGE+ W+++ +++HH+QA  TGA+IV  CGFDS+P+++GT  + ++MKR HG S ++V  +  D +GG+
Sbjct:  124 RTEVVLTTVGPYQKYGNELVAACVEAGIKYCDLTGETYWIQDNVERHHEQAAATGARIVHCCGFDSVPSEMGTLLLAEHMKRVHGGSLEEVANVLVDASGGV 225          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A523K935_9DELT (Saccharopine dehydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523K935_9DELT)

HSP 1 Score: 125 bits (315), Expect = 2.180e-32
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGG 303
            R  VI TTVGPY +YGSKLV  C R G H CDLTGE  W+R MID H D+A  +GA+IV +CGFD IP+D+G FF+ + M+  HGVS D ++Y     +GG
Sbjct:   82 RGSVICTTVGPYAKYGSKLVAACARSGTHYCDLTGEVHWIRRMIDAHQDEALASGARIVHTCGFDCIPSDLGAFFLQNEMQSRHGVSADYIKYRVKGFSGG 182          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A356TFV9_9DELT (Saccharopine dehydrogenase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356TFV9_9DELT)

HSP 1 Score: 125 bits (313), Expect = 4.190e-32
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R  V+ TTVGPY +YG  LV+ CVR G H CDLTGE+ ++R M+D+HH+ A R+GA+IV  CGFDSIP+D+GT+ M + M R HGV   +VR+   +  GG 
Sbjct:   83 RATVVCTTVGPYAKYGEALVDACVRHGTHYCDLTGETQFIRRMVDRHHEAAKRSGARIVHCCGFDSIPSDLGTWMMQEEMHRRHGVYAKEVRFYAGESKGGF 184          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A554GRA4_9DELT (Saccharopine dehydrogenase n=1 Tax=Corallococcus sp. Z5C101001 TaxID=2596829 RepID=A0A554GRA4_9DELT)

HSP 1 Score: 125 bits (313), Expect = 4.760e-32
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R +VI+TTVGPY RYGS+LV  CVR G   CDLTGE  W+R+MID H  +A  TGA+IV +CGFDSIP+D+G   + DYM+  HG   D +R+  T + GG 
Sbjct:   85 RTRVIITTVGPYARYGSELVAACVRAGTDYCDLTGEVQWMRKMIDAHDSRARETGARIVHTCGFDSIPSDLGALMLQDYMREKHGGHCDRIRFHVTRMRGGF 186          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A3Q8I9B5_9DELT (Saccharopine dehydrogenase n=2 Tax=Melittangium boletus TaxID=83453 RepID=A0A3Q8I9B5_9DELT)

HSP 1 Score: 124 bits (312), Expect = 6.650e-32
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R +VI++TVGPY  +G++LV  C R G   CDLTGE  W+R MID HH QA  +GA+IV +CGFDSIP+D+G F + +YM+  HG   D VR+  T +AGG+
Sbjct:   82 RTRVIISTVGPYASHGNELVAACARNGTDYCDLTGEVQWMRRMIDAHHAQARESGARIVHTCGFDSIPSDLGVFMLQEYMREQHGGHLDQVRFYVTKMAGGV 183          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A3A8QAR8_9DELT (Saccharopine dehydrogenase n=3 Tax=Corallococcus TaxID=83461 RepID=A0A3A8QAR8_9DELT)

HSP 1 Score: 124 bits (311), Expect = 9.290e-32
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGGL 306
            R +V+++TVGPY RYGS+LV  CVR G   CDLTGE  W+R+MID H   A  TGA+IV +CGFDSIP+D+G   + DYM+  HG   D VRY  T + GG 
Sbjct:   85 RTRVVISTVGPYARYGSELVAACVRAGAAYCDLTGEVHWMRKMIDAHDAHARETGARIVHTCGFDSIPSDLGVLLLQDYMRERHGGHCDQVRYHLTRMRGGF 186          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A2E6E9Z9_9GAMM (Saccharopine dehydrogenase n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A2E6E9Z9_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 1.180e-31
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGG 303
            R +VIL+TVGPY +YGS LVE+C++ G   CDLTGES W+R MIDKH D A ++GA+IV SCGFDSIP+DIG +++ +Y +  H  S   +  +   + GG
Sbjct:   86 RTKVILSTVGPYAKYGSDLVESCIKNGTDYCDLTGESQWIRRMIDKHEDDAKKSGARIVMSCGFDSIPSDIGVYYLTEYARAQHAQSCASITMLVRAIKGG 186          
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Match: A0A0H4WW43_9DELT (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WW43_9DELT)

HSP 1 Score: 123 bits (309), Expect = 1.840e-31
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQAGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAGG 303
            R +V+ TTVGPY RYGS+LV  CVR GV  CDLTGE  W+R MID HH+ A +TGA+IV +CGFDSIP+D+G   M  +M+  HG   D VR     + GG
Sbjct:   84 RTRVVCTTVGPYARYGSELVAACVRAGVSYCDLTGEVQWMRRMIDAHHEAAQKTGARIVHTCGFDSIPSDLGVLMMQHHMREAHGGHLDGVRLYMGPMRGG 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135222.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB2_ECTSI3.360e-4369.00Sacchrp_dh_NADP domain-containing protein n=2 Tax=... [more]
A0A3A8J8B6_9DELT2.350e-3355.88Saccharopine dehydrogenase n=5 Tax=Myxococcaceae T... [more]
A0A6S9JTW0_HETAK1.240e-3249.02Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A523K935_9DELT2.180e-3255.45Saccharopine dehydrogenase n=1 Tax=Deltaproteobact... [more]
A0A356TFV9_9DELT4.190e-3252.94Saccharopine dehydrogenase n=2 Tax=Myxococcales Ta... [more]
A0A554GRA4_9DELT4.760e-3254.90Saccharopine dehydrogenase n=1 Tax=Corallococcus s... [more]
A0A3Q8I9B5_9DELT6.650e-3252.94Saccharopine dehydrogenase n=2 Tax=Melittangium bo... [more]
A0A3A8QAR8_9DELT9.290e-3254.90Saccharopine dehydrogenase n=3 Tax=Corallococcus T... [more]
A0A2E6E9Z9_9GAMM1.180e-3152.48Saccharopine dehydrogenase n=1 Tax=Woeseia sp. Tax... [more]
A0A0H4WW43_9DELT1.840e-3155.45Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135222contigH-elongata_contig135222:390..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.7e-35
Seed eggNOG ortholog2880.D8LSB2
KEGG koko:K09527,ko:K17261
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG3268@1,KOG2733@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.6656535-CDS-H-elongata_contig135222:389..5961622929802.6656535-CDS-H-elongata_contig135222:389..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135222 390..596 +
1691679163.1944003-CDS-H-elongata_contig135222:389..5961691679163.1944003-CDS-H-elongata_contig135222:389..596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135222 390..596 +
1622929802.6845264-CDS-H-elongata_contig135222:917..10161622929802.6845264-CDS-H-elongata_contig135222:917..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135222 918..1016 +
1691679163.207337-CDS-H-elongata_contig135222:917..10161691679163.207337-CDS-H-elongata_contig135222:917..1016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135222 918..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135222.2487.1prot_H-elongata_contig135222.2487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135222 390..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135222.2487.1

>prot_H-elongata_contig135222.2487.1 ID=prot_H-elongata_contig135222.2487.1|Name=mRNA_H-elongata_contig135222.2487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RRQVILTTVGPYNRYGSKLVETCVRKGVHLCDLTGESTWVREMIDKHHDQ
AGRTGAKIVSSCGFDSIPADIGTFFMMDYMKRTHGVSPDDVRYIFTDVAG
GL
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mRNA from alignment at H-elongata_contig135222:390..1016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135222.2487.1 ID=mRNA_H-elongata_contig135222.2487.1|Name=mRNA_H-elongata_contig135222.2487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig135222:390..1016+ (Himanthalia elongata Himel1 dioecious)
CGGAGGCAGGTCATCTTAACGACCGTGGGTCCCTACAATCGGTACGGAAG CAAGCTTGTGGAGACGTGTGTGAGGAAGGGAGTTCACCTCTGTGATCTGA CAGGCGAGTCAACGTGGGTGAGGGAAATGATTGATAAGCATCATGATCAA GCGGGTCGCACAGGCGCGAAGATCGTCTCCTCCTGCGGCTTCGACAGCAT TCCGGCGGTGAGTAGACGTCTTGTCCGATACGAGTTGTTGATATTGGGGG TAGTATCGTGGTATCGTGGGGGAGAGGGCGGGTCCTTTTCATAGTTTTCA CTTGCGCCACACACGCTTTTTTTTGGGGGGGGGGGGGGGGTTTGGTTTGT TGTGACAAAATGCAAAATAATACTTTCCTTGTGATACATAACCAACAACA ATAAAACTAATCATATGGTGCGTTTCATGCCAACGGCGGGTCTCGTTTTC ATTTGTATTACTTTTTTTTGTAAAACATAAATCGCCCATTACCGTCACTG GTACGAAAACAAACATATGGTCAACTAGGACATCGGCACCTTCTTTATGA TGGACTACATGAAGCGTACACATGGCGTCAGCCCGGACGACGTGAGATAC ATCTTCACGGACGTTGCTGGAGGCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig135222:390..1016+

>mRNA_H-elongata_contig135222.2487.1 ID=mRNA_H-elongata_contig135222.2487.1|Name=mRNA_H-elongata_contig135222.2487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig135222:390..1016+ (Himanthalia elongata Himel1 dioecious)
CGGAGGCAGGTCATCTTAACGACCGTGGGTCCCTACAATCGGTACGGAAG
CAAGCTTGTGGAGACGTGTGTGAGGAAGGGAGTTCACCTCTGTGATCTGA
CAGGCGAGTCAACGTGGGTGAGGGAAATGATTGATAAGCATCATGATCAA
GCGGGTCGCACAGGCGCGAAGATCGTCTCCTCCTGCGGCTTCGACAGCAT
TCCGGCGCGGAGGCAGGTCATCTTAACGACCGTGGGTCCCTACAATCGGT
ACGGAAGCAAGCTTGTGGAGACGTGTGTGAGGAAGGGAGTTCACCTCTGT
GATCTGACAGGCGAGTCAACGTGGGTGAGGGAAATGATTGATAAGCATCA
TGATCAAGCGGGTCGCACAGGCGCGAAGATCGTCTCCTCCTGCGGCTTCG
ACAGCATTCCGGCGGACATCGGCACCTTCTTTATGATGGACTACATGAAG
CGTACACATGGCGTCAGCCCGGACGACGTGAGATACATCTTCACGGACGT
TGCTGGAGGCTTGGACATCGGCACCTTCTTTATGATGGACTACATGAAGC
GTACACATGGCGTCAGCCCGGACGACGTGAGATACATCTTCACGGACGTT
GCTGGAGGCTTG
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