mRNA_H-elongata_contig13521.2486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13521.2486.1
Unique NamemRNA_H-elongata_contig13521.2486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: T1G7Q5_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G7Q5_HELRO)

HSP 1 Score: 81.3 bits (199), Expect = 1.560e-18
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 LNSALEPSIDAGSNALIRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            L+  L+  I A   ++ +WWA N  ++P I  VAR  LA PA S PSE++FS SG I  E+RNRL PEH+EQL+FL
Sbjct:    5 LDCFLQEQIIAPEESVYKWWADNASRFPTIAKVARKYLAIPATSVPSEQIFSMSGQIMNERRNRLKPEHVEQLVFL 80          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: T1EL11_HELRO (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EL11_HELRO)

HSP 1 Score: 68.6 bits (166), Expect = 7.610e-14
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   67 NELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            N  ++P I  VAR  LA PA SAPSE++FS SG I  E+RNRL PEH+EQL+FL
Sbjct:    1 NASRFPTIAKVARKYLAIPATSAPSEQIFSMSGQIINERRNRLKPEHVEQLVFL 54          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: A0A0A1WDS8_ZEUCU (Transposable element Hobo transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WDS8_ZEUCU)

HSP 1 Score: 70.5 bits (171), Expect = 1.350e-13
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   46 LIRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            +++WW  NE +YPL+  VA   L  PA SAP+ER+FS +G +  EKRNRL P  ++ L+FL
Sbjct:   81 VLKWWGVNENRYPLLSKVALKFLTIPASSAPAERVFSLAGNVITEKRNRLGPTSVDNLLFL 141          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: UPI000D626C40 (zinc finger BED domain-containing protein 1-like n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000D626C40)

HSP 1 Score: 69.7 bits (169), Expect = 3.420e-12
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   16 EPSIDAGSNALIRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            +P ID   N + R+W+     YPL+  +A++ LA    S PSERLFS++G I  + RNRL+PEHL+QL+FL
Sbjct:  339 QPMIDRRDNPM-RYWSNLASVYPLLSVIAKNYLAIVGTSVPSERLFSRAGNILTDSRNRLSPEHLQQLLFL 408          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: A0A0A1WMC4_ZEUCU (Putative AC9 transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WMC4_ZEUCU)

HSP 1 Score: 66.6 bits (161), Expect = 4.900e-12
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   46 LIRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            +++WW  N  +YP +  +A  VLA PA SA SER+FS +G I  EKRNR+AP+ ++ ++FL
Sbjct:   91 VMQWWLNNNKRYPRLSKLAEKVLAIPASSAASERVFSLAGNIITEKRNRIAPKTVDSILFL 151          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: UPI0017474072 (zinc finger BED domain-containing protein 4-like n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI0017474072)

HSP 1 Score: 67.8 bits (164), Expect = 8.320e-12
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   16 EPSIDAGSNALIRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            +P      N +  W+   ++ YP +  VAR  L   A S PSERLFS++G I  E+RNRL+P+HL+QL+FL
Sbjct:  181 QPLAKLKENPMFYWFKKYKMIYPTLSKVARKYLFMVATSVPSERLFSRAGNILTEERNRLSPDHLQQLLFL 251          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 64.7 bits (156), Expect = 8.320e-12
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   55 WWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            WW ++E KYPL+  VA+  L+ PA S  SER FS +G +   KRN LAPE++  L+FL
Sbjct:   40 WWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFL 97          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: UPI001955CDF1 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955CDF1)

HSP 1 Score: 68.2 bits (165), Expect = 1.250e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   49 IRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            ++WW  NE K+P +  VA+S LA PA+S PSERLFS +G I  +KR  L  EH++ L FL
Sbjct:  531 LQWWKENETKFPTLAVVAKSYLAAPAISTPSERLFSAAGTIVSKKRASLTKEHVDMLTFL 590          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: A0A7J5XUC7_DISMA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Nototheniidae TaxID=8206 RepID=A0A7J5XUC7_DISMA)

HSP 1 Score: 67.4 bits (163), Expect = 2.280e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   49 IRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            ++WW  NE K+P +  VARS LA PA S PSERLFS +G I  +KR  L  EH++ L FL
Sbjct:  382 LQWWNENETKFPSLAVVARSYLAAPATSTPSERLFSAAGTIVSKKRASLTKEHVDMLTFL 441          
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Match: A0A6P8TVQ2_GYMAC (zinc finger BED domain-containing protein 1-like n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8TVQ2_GYMAC)

HSP 1 Score: 67.4 bits (163), Expect = 2.340e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   49 IRWWAANELKYPLIDSVARSVLAFPALSAPSERLFSQSGMIACEKRNRLAPEHLEQLMFL 228
            ++WW  NE K+P +  VARS LA PA S PSERLFS +G I  +KR  L  EH++ L FL
Sbjct:  541 LQWWKENETKFPSLAVVARSYLAAPATSTPSERLFSAAGNIVSKKRASLTKEHVDMLTFL 600          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13521.2486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1G7Q5_HELRO1.560e-1851.32Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
T1EL11_HELRO7.610e-1461.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=He... [more]
A0A0A1WDS8_ZEUCU1.350e-1349.18Transposable element Hobo transposase n=1 Tax=Zeug... [more]
UPI000D626C403.420e-1247.89zinc finger BED domain-containing protein 1-like n... [more]
A0A0A1WMC4_ZEUCU4.900e-1247.54Putative AC9 transposase n=1 Tax=Zeugodacus cucurb... [more]
UPI00174740728.320e-1245.07zinc finger BED domain-containing protein 4-like n... [more]
A0A2S2P4C5_SCHGA8.320e-1250.00Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI001955CDF11.250e-1151.67E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pimephal... [more]
A0A7J5XUC7_DISMA2.280e-1153.33Dimer_Tnp_hAT domain-containing protein n=2 Tax=No... [more]
A0A6P8TVQ2_GYMAC2.340e-1153.33zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13521contigH-elongata_contig13521:2975..3202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.6e-14
Seed eggNOG ortholog6412.HelroP90391
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.6230257-CDS-H-elongata_contig13521:2974..32021622929802.6230257-CDS-H-elongata_contig13521:2974..3202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13521 2975..3202 -
1691679163.1807516-CDS-H-elongata_contig13521:2974..32021691679163.1807516-CDS-H-elongata_contig13521:2974..3202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13521 2975..3202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13521.2486.1prot_H-elongata_contig13521.2486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13521 2975..3202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13521.2486.1

>prot_H-elongata_contig13521.2486.1 ID=prot_H-elongata_contig13521.2486.1|Name=mRNA_H-elongata_contig13521.2486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
LNSALEPSIDAGSNALIRWWAANELKYPLIDSVARSVLAFPALSAPSERL
FSQSGMIACEKRNRLAPEHLEQLMFL
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mRNA from alignment at H-elongata_contig13521:2975..3202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13521.2486.1 ID=mRNA_H-elongata_contig13521.2486.1|Name=mRNA_H-elongata_contig13521.2486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig13521:2975..3202- (Himanthalia elongata Himel1 dioecious)
CTGAATTCAGCTCTAGAACCTAGTATAGATGCTGGTAGTAATGCGCTTAT AAGGTGGTGGGCAGCAAACGAGCTCAAGTATCCGCTCATTGACAGCGTAG CTCGATCAGTCCTGGCTTTTCCTGCTTTATCAGCCCCATCTGAGCGCCTA TTCTCACAAAGTGGTATGATTGCTTGCGAAAAAAGGAACAGGCTAGCACC TGAGCATCTAGAGCAGCTGATGTTTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig13521:2975..3202-

>mRNA_H-elongata_contig13521.2486.1 ID=mRNA_H-elongata_contig13521.2486.1|Name=mRNA_H-elongata_contig13521.2486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig13521:2975..3202- (Himanthalia elongata Himel1 dioecious)
CTGAATTCAGCTCTAGAACCTAGTATAGATGCTGGTAGTAATGCGCTTAT
AAGGTGGTGGGCAGCAAACGAGCTCAAGTATCCGCTCATTGACAGCGTAG
CTCGATCAGTCCTGGCTTTTCCTGCTTTATCAGCCCCATCTGAGCGCCTA
TTCTCACAAAGTGGTATGATTGCTTGCGAAAAAAGGAACAGGCTAGCACC
TGAGCATCTAGAGCAGCTGATGTTTTTGCTGAATTCAGCTCTAGAACCTA
GTATAGATGCTGGTAGTAATGCGCTTATAAGGTGGTGGGCAGCAAACGAG
CTCAAGTATCCGCTCATTGACAGCGTAGCTCGATCAGTCCTGGCTTTTCC
TGCTTTATCAGCCCCATCTGAGCGCCTATTCTCACAAAGTGGTATGATTG
CTTGCGAAAAAAGGAACAGGCTAGCACCTGAGCATCTAGAGCAGCTGATG
TTTTTG
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