mRNA_H-elongata_contig13509.2479.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13509.2479.1
Unique NamemRNA_H-elongata_contig13509.2479.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: UPI000D0D6761 (uncharacterized protein LOC112271633 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI000D0D6761)

HSP 1 Score: 57.4 bits (137), Expect = 8.480e-8
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    4 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEE 222
            +P+ WW+ +G  ++  L   AIR  S+  +S+G ERNWS +  +  E  +R+  E+  KLV+VR NL+L+SE+
Sbjct:   67 NPSSWWLMFGG-EVRILQGYAIRILSQCMSSSGCERNWSTFALMHAEAKNRLFTEKLHKLVYVRYNLKLRSEQ 138
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BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: A0A8N7XCG1_SPOFR (uncharacterized protein LOC118277321 isoform X1 n=5 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7XCG1_SPOFR)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-7
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 MSPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEEFTKRLFVA 246
            + P  WW   G  +   L+ +A +  S  P+SA +ERNWSL+G+ +    +R+  ER +KL+ VRAN+RL S+   + ++ A
Sbjct:  530 IEPRTWW--RGLCNCQILSSVARKLLSIPPSSASTERNWSLFGNTLTRCRNRITTERLQKLITVRANIRLLSDNPNENVYFA 609
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BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: UPI001F5C7D3E (uncharacterized protein LOC124683127 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C7D3E)

HSP 1 Score: 56.2 bits (134), Expect = 2.820e-7
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    4 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRANLRLQSEE 222
             PA WW+ YG  ++  L   A R  S+  +S+G ERNWS +  +  +  +++  E+  KLV+VR NLRL++EE
Sbjct:  132 GPAHWWLLYGG-EVRILQGYAFRIVSQCMSSSGCERNWSPFALMHAQAKNQLAYEKLHKLVYVRYNLRLRTEE 203
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BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Match: A0A6S7ICX0_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7ICX0_PARCT)

HSP 1 Score: 49.7 bits (117), Expect = 6.300e-5
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:    4 SPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERHSRMGPERARKLVFVRAN 201
            S   WW   G  D P L  +A R  S   +SA SER++S +G +  +  +R+GPE+ +KLV+++ N
Sbjct:  607 SVLQWWKADG-TDWPLLQDLATRVFSMAASSAASERSFSTFGFIHTKLRNRLGPEKVKKLVYIKTN 671
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13509.2479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000D0D67618.480e-839.73uncharacterized protein LOC112271633 n=1 Tax=Brach... [more]
A0A8N7XCG1_SPOFR1.210e-736.59uncharacterized protein LOC118277321 isoform X1 n=... [more]
UPI001F5C7D3E2.820e-739.73uncharacterized protein LOC124683127 n=1 Tax=Loliu... [more]
A0A6S7ICX0_PARCT6.300e-537.88Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13509contigH-elongata_contig13509:289..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog4155.Migut.O00402.1.p
EggNOG free text desc.BED zinc finger
EggNOG OGs2C7QK@1,2QQE0@2759,37NU3@33090,3G99Z@35493,44PJF@71274
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.103659-CDS-H-elongata_contig13509:288..5491622929802.103659-CDS-H-elongata_contig13509:288..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13509 289..549 -
1691679162.987199-CDS-H-elongata_contig13509:288..5491691679162.987199-CDS-H-elongata_contig13509:288..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13509 289..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13509.2479.1prot_H-elongata_contig13509.2479.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13509 289..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13509.2479.1

>prot_H-elongata_contig13509.2479.1 ID=prot_H-elongata_contig13509.2479.1|Name=mRNA_H-elongata_contig13509.2479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MSPADWWVTYGWIDLPDLAQIAIRTTSKVPASAGSERNWSLYGDVMGERH
SRMGPERARKLVFVRANLRLQSEEFTKRLFVAWRIH*
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mRNA from alignment at H-elongata_contig13509:289..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13509.2479.1 ID=mRNA_H-elongata_contig13509.2479.1|Name=mRNA_H-elongata_contig13509.2479.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig13509:289..549- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCGCAGACTGGTGGGTAACGTACGGGTGGATCGACCTGCCGGA
TTTGGCCCAGATAGCCATCCGCACGACTTCGAAGGTGCCTGCATCAGCAG
GATCGGAGCGCAATTGGAGTCTTTACGGAGATGTCATGGGCGAAAGGCAC
TCGCGGATGGGCCCTGAGCGAGCCAGGAAGCTGGTGTTCGTGAGGGCTAA
CTTGAGGCTGCAGAGCGAAGAGTTTACCAAGCGGTTGTTCGTTGCGTGGA
GGATTCATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13509:289..549-

>mRNA_H-elongata_contig13509.2479.1 ID=mRNA_H-elongata_contig13509.2479.1|Name=mRNA_H-elongata_contig13509.2479.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig13509:289..549- (Himanthalia elongata Himel1 dioecious)
ATGTCCCCCGCAGACTGGTGGGTAACGTACGGGTGGATCGACCTGCCGGA
TTTGGCCCAGATAGCCATCCGCACGACTTCGAAGGTGCCTGCATCAGCAG
GATCGGAGCGCAATTGGAGTCTTTACGGAGATGTCATGGGCGAAAGGCAC
TCGCGGATGGGCCCTGAGCGAGCCAGGAAGCTGGTGTTCGTGAGGGCTAA
CTTGAGGCTGCAGAGCGAAGAGTTTACCAAGCGGTTGTTCGTTGCGTGGA
GGATTCATTAGATGTCCCCCGCAGACTGGTGGGTAACGTACGGGTGGATC
GACCTGCCGGATTTGGCCCAGATAGCCATCCGCACGACTTCGAAGGTGCC
TGCATCAGCAGGATCGGAGCGCAATTGGAGTCTTTACGGAGATGTCATGG
GCGAAAGGCACTCGCGGATGGGCCCTGAGCGAGCCAGGAAGCTGGTGTTC
GTGAGGGCTAACTTGAGGCTGCAGAGCGAAGAGTTTACCAAGCGGTTGTT
CGTTGCGTGGAGGATTCATTAG
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