mRNA_H-elongata_contig135073.2476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135073.2476.1
Unique NamemRNA_H-elongata_contig135073.2476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135073.2476.1 vs. uniprot
Match: A0A151R4G2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R4G2_CAJCA)

HSP 1 Score: 53.1 bits (126), Expect = 1.680e-6
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   10 WISDDGASRHMTSHDSM-TNYRECNGI--VRTAGGDILPIEGVGDILLRFLSDSGAFEIQLLNVAFVPQLSHNLLS 228
            WISD GAS HMT   SM +N R+C+ I  V    G  LPI G+GD +++  +      + L NV  VP L+ NLLS
Sbjct:   19 WISDTGASNHMTGTSSMLSNIRQCSSIDSVLIGDGSPLPIHGIGDSVIKQKN----ITLPLNNVLLVPNLTKNLLS 90
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BLAST of mRNA_H-elongata_contig135073.2476.1 vs. uniprot
Match: A0A2K3L0D5_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L0D5_TRIPR)

HSP 1 Score: 52.0 bits (123), Expect = 6.520e-6
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   10 WISDDGASRHMTSHDSM-TNYRECNG--IVRTAGGDILPIEGVGDILLRFLSDSGAFEIQLLNVAFVPQLSHNLLS 228
            WISD GAS HMT   SM +N R+C+G   V    G  LPI G+GD  ++  + +    + L +V  VP L+ NLLS
Sbjct:  340 WISDTGASNHMTGKTSMLSNIRQCSGTDFVLIGDGSPLPIHGIGDSFIKQKNTT----LPLHDVLLVPDLTKNLLS 411
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BLAST of mRNA_H-elongata_contig135073.2476.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:   10 WISDDGASRHMTSHDSMT-NYRECNGI--VRTAGGDILPIEGVGDILLRFLSDSGAFEIQLLNVAFVPQLSHNLLS 228
            WISD GAS HMT   SM  N R+C+G   V    G  LPI G+GD  ++         + L +V  VP L+ NLLS
Sbjct:  339 WISDTGASNHMTGKTSMLHNIRQCSGTDSVLIGDGSPLPIHGIGDSFIK----QNNITLPLHDVLLVPDLTKNLLS 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135073.2476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A151R4G2_CAJCA1.680e-644.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3L0D5_TRIPR6.520e-643.42Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A2Z6NS08_TRISU1.240e-543.42Integrase catalytic domain-containing protein (Fra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135073contigH-elongata_contig135073:1463..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.8949928-CDS-H-elongata_contig135073:1462..16931622929801.8949928-CDS-H-elongata_contig135073:1462..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135073 1463..1693 +
1691679162.8931077-CDS-H-elongata_contig135073:1462..16931691679162.8931077-CDS-H-elongata_contig135073:1462..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135073 1463..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135073.2476.1prot_H-elongata_contig135073.2476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135073 1463..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135073.2476.1

>prot_H-elongata_contig135073.2476.1 ID=prot_H-elongata_contig135073.2476.1|Name=mRNA_H-elongata_contig135073.2476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
LESWISDDGASRHMTSHDSMTNYRECNGIVRTAGGDILPIEGVGDILLRF
LSDSGAFEIQLLNVAFVPQLSHNLLSL
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mRNA from alignment at H-elongata_contig135073:1463..1693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135073.2476.1 ID=mRNA_H-elongata_contig135073.2476.1|Name=mRNA_H-elongata_contig135073.2476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig135073:1463..1693+ (Himanthalia elongata Himel1 dioecious)
TTAGAGTCGTGGATTTCGGATGATGGTGCCTCCCGTCACATGACCTCACA
CGACTCAATGACCAATTACCGTGAATGCAACGGAATTGTTAGGACCGCTG
GCGGTGATATACTCCCGATCGAGGGTGTTGGAGACATTCTCCTTCGCTTT
CTGTCTGACTCAGGAGCGTTTGAGATTCAGCTGTTGAACGTTGCGTTTGT
ACCACAACTGAGTCACAATCTTTTGTCATTA
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Coding sequence (CDS) from alignment at H-elongata_contig135073:1463..1693+

>mRNA_H-elongata_contig135073.2476.1 ID=mRNA_H-elongata_contig135073.2476.1|Name=mRNA_H-elongata_contig135073.2476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig135073:1463..1693+ (Himanthalia elongata Himel1 dioecious)
TTAGAGTCGTGGATTTCGGATGATGGTGCCTCCCGTCACATGACCTCACA
CGACTCAATGACCAATTACCGTGAATGCAACGGAATTGTTAGGACCGCTG
GCGGTGATATACTCCCGATCGAGGGTGTTGGAGACATTCTCCTTCGCTTT
CTGTCTGACTCAGGAGCGTTTGAGATTCAGCTGTTGAACGTTGCGTTTGT
ACCACAACTGAGTCACAATCTTTTGTCATTATTAGAGTCGTGGATTTCGG
ATGATGGTGCCTCCCGTCACATGACCTCACACGACTCAATGACCAATTAC
CGTGAATGCAACGGAATTGTTAGGACCGCTGGCGGTGATATACTCCCGAT
CGAGGGTGTTGGAGACATTCTCCTTCGCTTTCTGTCTGACTCAGGAGCGT
TTGAGATTCAGCTGTTGAACGTTGCGTTTGTACCACAACTGAGTCACAAT
CTTTTGTCATTA
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