mRNA_H-elongata_contig135057.2474.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A6H5L508_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L508_9PHAE) HSP 1 Score: 229 bits (583), Expect = 4.280e-67 Identity = 131/198 (66.16%), Postives = 145/198 (73.23%), Query Frame = 1
Query: 10 QRMMMGRLPTRNRQSFPRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLLSKKASS---------------NEQAELYVWGGGRLGQLGLGAPSTRLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQGVA 558
Q+ M+ RLPTR+RQ PRLA+SL+ RVTS+SAGYAHS+AVTDQGRAF+SGQNDRGQ H IHSG FREVVGMA F LEVACGEQHNLARVL S ++QAEL+VWGGGRLGQLGLGA ST+LAPTHN LS VGGGVVSVSAGANHSVC +ASGLV WG +EY QQG A
Sbjct: 230 QKRMLERLPTRSRQPVPRLATSLRGLRVTSISAGYAHSVAVTDQGRAFSSGQNDRGQLGLAHR-------IHSGIFREVVGMAGRFFLEVACGEQHNLARVLPSSDXXXXXXXXXXXXXXXXXLDQQAELFVWGGGRLGQLGLGAASTKLAPTHNPLLSDVGGGVVSVSAGANHSVCAMASGLVMSWGASEYCQQGCA 420
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A7R9U535_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U535_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.310e-26 Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 1
Query: 22 MGRLPTRNRQSF-PRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLLSKKASSNEQAELYVWGGGRLGQLGLGAPST---RLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
M R+ T SF P + SL ++ VSAGY H +A++D GR F +G NDRGQ G G I++ KF++V A+ +L+V CG+QH +ARV S A + +E++VWG G LGQLGLG RL P L V+ ++AGANHS+ + +G VF WGH EY Q G
Sbjct: 233 MLRMRTTRAPSFRPVVVESLLGTKIVRVSAGYGHIMALSDSGRLFGAGYNDRGQL-------GLGHRINTAKFQQVRTFADRRVLQVVCGQQHTIARVESSTGAKESTLSEVFVWGNGVLGQLGLGRRGISKGRLVPHRLATLDDQN--VIDIAAGANHSLALSDTGDVFFWGHTEYGQSG 404
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A7R9YAY1_9STRA (Hypothetical protein n=3 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAY1_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.340e-26 Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 1
Query: 22 MGRLPTRNRQSF-PRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLLSKKASSNEQAELYVWGGGRLGQLGLGAPST---RLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
M R+ T SF P + SL ++ VSAGY H +A++D GR F +G NDRGQ G G I++ KF++V A+ +L+V CG+QH +ARV S A + +E++VWG G LGQLGLG RL P L V+ ++AGANHS+ + +G VF WGH EY Q G
Sbjct: 233 MLRMRTTRAPSFRPVVVESLLGTKIVRVSAGYGHIMALSDSGRLFGAGYNDRGQL-------GLGHRINTAKFQQVRTFADRRVLQVVCGQQHTIARVESSTGAKESTLSEVFVWGNGVLGQLGLGRRGISKGRLVPHRLATLDDQN--VIDIAAGANHSLALSDTGDVFFWGHTEYGQSG 404
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A7S2RQ85_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQ85_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.810e-24 Identity = 75/201 (37.31%), Postives = 101/201 (50.25%), Query Frame = 1
Query: 58 PRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLLSKKASSNEQAELYVWGGGRLGQLGLGAPST-------------RLAPTHNQPLSGVGG---------------------GVVSVSAGANHSVCVVASGLVFGWGHAEYNQQGVA 558
P L +SLQ R++ VSAG+ H++A+T+ GR F+ G NDRGQ G G ++S F+ V +AN ++ CG+QHNLA V ++ + ++ WG G LGQLGLG T +P N+ GG VV ++AGANHSVCVV+ G VF WGH EY Q G A
Sbjct: 243 PVLCTSLQGHRISMVSAGFGHTLALTEGGRVFSCGYNDRGQL-------GLGHRMNSSSFQLVRALANKRCSKIVCGQQHNLALVSVAP-----DHEVVFTWGNGALGQLGLGRSVTGRRTPVVVPGILAAASPADNEDKGKSGGLAASAEPAGLAEFAGFLAKSVSVVDIAAGANHSVCVVSDGSVFTWGHGEYGQHGSA 431
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A7S2AN21_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AN21_9STRA) HSP 1 Score: 100 bits (249), Expect = 2.980e-21 Identity = 69/173 (39.88%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 37 TRNRQSFPRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLLSKKASSNEQAELYVWGGGRLGQLGLGAPST-RLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
TR P LA+SL+ ++ ++AGY H++A+ GR F+ G NDRGQ G G I+ F+ + + + +VACG+QH LAR +E+ VWG G LGQLGLG T R P LS +V V+AG NHSV V + G V+ WGH EY Q G
Sbjct: 216 TRRPVPIPFLATSLEGIQIAQLAAGYGHNLALAKDGRVFSCGYNDRGQL-------GLGHRINCADFQHIERLVG--VTQVACGQQHCLART----------SSEVMVWGNGALGQLGLGRTVTSRRVPVAIDSLSDRT--IVDVAAGGNHSVAVDSDGCVWTWGHGEYGQHG 367
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A484ECX6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECX6_BRELC) HSP 1 Score: 94.7 bits (234), Expect = 3.050e-19 Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = 1
Query: 91 VTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLA--------RVLLSKKASSNEQAELYVWGGGRLGQLGLGAPSTRLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
VT+++AG+AHS+A T++G F+ G ND GQ G G+ +S +F+ + + FI +ACG+QH+LA + + K S+ + WG G LGQLG G + L VSV+AG++HSV V G V+ WGH+EY Q G
Sbjct: 218 VTNIAAGFAHSLATTNEGAVFSCGYNDNGQL-------GLGSRRNSAEFQRITALEKYFIQHIACGQQHSLACSSLRDSTKAIKGKNECSDRSGVCFSWGLGVLGQLGTGENLSWLPAEVKLARP-----AVSVAAGSHHSVAVTDDGKVYTWGHSEYGQHG 367
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: W2PHQ7_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2PHQ7_PHYPN) HSP 1 Score: 94.4 bits (233), Expect = 4.150e-19 Identity = 64/173 (36.99%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 58 PRLASSL-QYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLA--RVLLSKKASSNEQAE-----LYVWGGGRLGQLGLGAPSTRLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
PRLA+ L VT+++AG+AHS+A T+ G F+ G ND GQ G G+ +S +F+ + + FI +ACG+QH+LA R++ +A+++++ + + WG G LGQLG G + L VSV+AG++HSV V G V+ WGH+EY Q G
Sbjct: 206 PRLATGLLSRLVVTTIAAGFAHSLATTNDGAVFSCGYNDNGQL-------GLGSRRNSAEFQHIQALEGYFIEHIACGQQHSLACSRLIGPDEATNDDEPKSRSGVCFSWGLGVLGQLGTGVNKSWLPKEVKLARP-----AVSVAAGSHHSVAVTDDGKVYTWGHSEYGQHG 366
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A662WPY8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPY8_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 7.700e-19 Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 58 PRLA-SSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLA--RVLLSKKASSNEQAE-----LYVWGGGRLGQLGLGAPSTRLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
PRL SL VT+++AG+AHS+A T+ G F+ G ND GQ G G+ +S FR + ++ I ++ACG+QH+LA R++ S+ S+E+ + WG G LGQLG G + L P + + VS++AG++HSV V G V+ WGH+EY Q G
Sbjct: 208 PRLCVGSLAKLVVTNIAAGFAHSLATTNDGAVFSCGYNDNGQL-------GLGSRRNSADFRRIEALSGYVIEQIACGQQHSLACSRLIESESPVSDEEPTSRSGVCFSWGLGVLGQLGSGTSISWL-PKEVKLVRPA----VSIAAGSHHSVAVTDDGKVYSWGHSEYGQHG 368
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: A0A482SR83_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR83_9ARCH) HSP 1 Score: 88.6 bits (218), Expect = 2.380e-18 Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 49 QSFPRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLARVLL----SKKASSNEQAELYVWGGGRLGQLGLG 396
Q P SL RVTS++AGYAH +A++ QGR +A+G NDRGQ G G I++ F+EV +AN +++VACG+QH+L R + + A++Y+WG G LGQLGLG
Sbjct: 96 QLLPIRVKSLSKVRVTSIAAGYAHVLALSVQGRVYAAGYNDRGQL-------GLGHRINTSLFKEVDFLANKLVVQVACGQQHSLCRAVERLVDGVEVGDKTGADVYIWGNGVLGQLGLG 208
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Match: D0NEQ9_PHYIT (Regulator of chromosome condensation (RCC1)-like protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NEQ9_PHYIT) HSP 1 Score: 91.3 bits (225), Expect = 4.870e-18 Identity = 64/173 (36.99%), Postives = 96/173 (55.49%), Query Frame = 1
Query: 58 PRLASS-LQYARVTSVSAGYAHSIAVTDQGRAFASGQNDRGQARQKHAGGGEGTPIHSGKFREVVGMANCFILEVACGEQHNLA--RVLLSKKASSNEQAE-----LYVWGGGRLGQLGLGAPSTRLAPTHNQPLSGVGGGVVSVSAGANHSVCVVASGLVFGWGHAEYNQQG 552
PRLA+ L VT+++AG+AHS+A T++G ++ G ND GQ G G+ +S +F+ + + + FI +ACG+QH+LA RV+ + S ++ + + WG G LGQLG G + L VSV+AG++HSV V G V+ WGH+EY Q G
Sbjct: 206 PRLATGPLARLVVTNIAAGFAHSLATTNEGAVYSCGYNDNGQL-------GLGSRRNSAEFQRIRALESYFIEHIACGQQHSLACSRVIDPGENSHDDDPKSRSGVCFSWGLGVLGQLGTGINKSWLPEEVKLARP-----AVSVAAGSHHSVAVTDDGKVYTWGHSEYGQHG 366 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135057.2474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig135057.2474.1 >prot_H-elongata_contig135057.2474.1 ID=prot_H-elongata_contig135057.2474.1|Name=mRNA_H-elongata_contig135057.2474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp MMMGRLPTRNRQSFPRLASSLQYARVTSVSAGYAHSIAVTDQGRAFASGQback to top mRNA from alignment at H-elongata_contig135057:119..1537- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig135057.2474.1 ID=mRNA_H-elongata_contig135057.2474.1|Name=mRNA_H-elongata_contig135057.2474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1419bp|location=Sequence derived from alignment at H-elongata_contig135057:119..1537- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig135057:119..1537- >mRNA_H-elongata_contig135057.2474.1 ID=mRNA_H-elongata_contig135057.2474.1|Name=mRNA_H-elongata_contig135057.2474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig135057:119..1537- (Himanthalia elongata Himel1 dioecious)back to top |