mRNA_H-elongata_contig13502.2473.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13502.2473.1 vs. uniprot
Match: D7FNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI5_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 1.080e-132 Identity = 419/1163 (36.03%), Postives = 524/1163 (45.06%), Query Frame = 1
Query: 1 QVERTVCSVSEKLLMHGRSAEASRLLRLASRLSGKPVRVDGQCVINPNDPVALVPARPLLEHPYAAISFLLELSGSQD-SRARLAKT-----------------------------LYPAFAPS------GAGEL-SELAGDLSRLWSSDSEE----EGKDEEKNIWGLSQEAGERGPGEPSESLQN-DGLDEGLDTREWLEAFE--GEAKSDSAGSSA-QTDGERFPFSIFVYFSLSYGKRVTVLLLWVPSGCPPHT---EYRLFQRPTAPRRPVLRHKYGARCVGADIRSLPDVAG----DSGGVPFIRPCQTLEAYQS-ASTAGFSRRRSVPEAYVVRDALHMLQGLPGDTFVLVEERDG----GPGCACRSRH----------------------------------------FSLSSSAESDLAVASLSPGALAGAIGDFVRVGNVAEYLRAFVADAV-ELPTAADAQIPCGERR----HGHVTQAFGAYASGQEGGGNGETLVGVLLLLRPHVESLEFIARVVKAGVGSWFANHSGQN-------------TRAVENAGN-----LRERTGRLLAALHESLVADALL---ERTVLDSLGL-EVAACAPRRCGLLLHVFFEVLAPYLSLINTWITEGRIQDPHGELFFSQTGGSDSGGSSAVERHGKGSSGSFVEGGIRNRYT---DPVVHVWDMGIVLHSKALPPFLAPLASAVALAGQDVLLMRKVRALVASAPHSDHFAGAQGAARRFVVCLWFPGVPRLEQALKSRSSGIGPGLGCESESLSLASRLFESLDTLAMRVHHSSSSGDHAGLEFENRLGRKYAEEVARVSGDGRVVSEIAKVDRQSSAHWMETAGGYGGKDEKGGKSFSRQDWDRNNFIDESVFEGQNGIAALAGEESKECQGKENAAIIDAAASGGGHAGEEYSLSTTGMDGVV-LPAVTQGHAWAARSLVAAQSTEARRPDERAQKPCAHGNARSSAACETDGTDQQMQGFFWGTARLALSPDATLRRSLHPTLAPPCPPISRGGVSVRLGERALNAKLTGGGIASRTFDRERIRRRGDDGVQDEKSVAKAA--DEVVAVFPPSVVLECCLLSPLWEHCRLTDSSCLGMFVEELEIVRLAGVLRGVYMSPSGTASCSPLFRFRETLFSLLGSFP 3099
+VE +CS +EK +MHG++ A+RLL LAS L+GKP+RV+G + + A P LEHPYAA++ L LSGSQ + AR A+ PA GA EL + GD SRLWSSDS+E EG EE QE E G G S +L + +DEG TREWL+AFE GE +AG +A + + ER V + + + V L P P+T L +R + P P RH YG+ C+GADIRSL G D G F+RPCQTLEA Q+ A RRRS+PEA VVR ALHML GL GD FV D G + + RH FSLS SA SDLAVASLSP ALAG +GD VRVG+ EYLRAFV DA AA+A +R HG + S G+GET+VG+L LLRP ESLE ++V+ G G W T A + G L ERTGRLL+ LH++LV+ AL+ S G+ + AA APRR G LLH+F EVLAPYL L+++WITEGR+ DPHGELFFS+ GG + G R DPVVHVWD GIVLHSKALPPFLAPLA AVALAGQD+ LMR+VRALV SR + G SE+ SLA L ESL LA RV ++ +G +K ++ A +G G DR+S AA++ +S++G+DG++ L +G A++ DE GFF GTA+LAL P A +R LHP+LAPP PP +RG G R + + G R +R G +A DEV PP++VLE CLL L EHCRL SSCL +F +EL IV +AGVLR VY+SP G + +PL RFR LF LLG+ P
Sbjct: 57 KVEAAICSFAEKFVMHGKTVNATRLLLLASSLTGKPMRVEGHRM-DTGGVNKTAAASPPLEHPYAALALALALSGSQRWAAAREAEVEGDEKEGDTPDAESVEGXXXXXXXXXXXXXXPARDEEEGEERQGAAELLAGFEGDSSRLWSSDSDEGSELEGGPEE-------QEEEEDGVGSFSSALPVVEDVDEG-GTREWLQAFEDDGEGSPRAAGYTAGEIEAERSGRWGKVENNGASTQLVEPLAPSYPPSSSPNTGVDSKNLARRASHP--PAARHNYGSPCIGADIRSLGGRRGAHDGDVHGSSFLRPCQTLEACQTRGGKAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVRGDASDTRGEQLSQQERHRAVGARGTGXXXXXXXXXXXXXDRWDVVSGSARARRGQEWFSLSESAASDLAVASLSPEALAGVLGDLVRVGSTVEYLRAFVTDAEGSASVAAEAAAAVLRQRVPRGHGEGRDTAVEHDSSSTSSGSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWXXXXXXXXXXXXXXXXXXXXXTGAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGDTAARAPRRRGWLLHMFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXADNIGGHNRQATAVGRDPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXSRKARTGAMASPGSETFSLAETLSESLRRLAERVRRANDAGPSR---------KKDQDDGAGCTGRG---------DRRSGXXXX------------------------------XXXXXXXXXAAVS------------------------------PVSSSGLDGIIDLEESREG---------------AKQDDE--------------------------LGFFGGTAQLALKPGAMFQRPLHPSLAPPSPPSTRGPSPAVGGRRIASCFIAGMSRRGRGGGSSDVRGAGGYPXXXXXXXXEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLSVFADELGIVSIAGVLRDVYLSPGGAKTDAPLSRFRGVLFGLLGALP 1083
BLAST of mRNA_H-elongata_contig13502.2473.1 vs. uniprot
Match: A0A6H5L6D8_9PHAE (GCP_N_terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D8_9PHAE) HSP 1 Score: 442 bits (1136), Expect = 7.350e-131 Identity = 436/1254 (34.77%), Postives = 540/1254 (43.06%), Query Frame = 1
Query: 1 QVERTVCSVSEKLLMHGRSAEASRLLRLASRLSGKPVRVDGQCVINPNDPVALVPARPLLEHPYAAISFLLELSGSQ------------DSR------------------ARLAKTLYPAFAPSGAGEL-SELAGDLSRLWSSDS----------EEEGKDEEKNIWGLSQEAGERGPGEPSESLQNDGLDEGLDTREWLEAFE--GEAKSDSAGSSA-QTDGERFPFSIFVYFSLSYGKRVTVLLLWVPSGCPPHTEYRLFQRPTAPRR----PVLRHKYGARCVGADIRSLPDVAG----DSGGVPFIRPCQTLEAYQS-ASTAGFSRRRSVPEAYVVRDALHMLQGLPGDTFVLVEERD----GGPGCACRSRH----------------------------------------FSLSSSAESDLAVASLSPGALAGAIGDFVRVGNVAEYLRAFVADAV-ELPTAADAQIPC-------------------------GERR---HGHVTQAFGAYASG-------------------QEGGG-----------------NGETLVGVLLLLRPHVESLEFIARVVKAGVGSWFANHSGQ---------------NTRAVENAGN-----LRERTGRLLAALHESLVADALL---ERTVLDSLGL-EVAACAPRRCGLLLHVFFEVLAPYLSLINTWITEGRIQDPHGELFFSQTGGSDSGGSSAVERHGKGSSGSFVEGGIRNRYT----DPVVHVWDMGIVLHSKALPPFLAPLASAVALAGQDVLLMRKVRALVASAPHSDHFAGAQGAARRFVVCLWFPGVPRLEQALKSRSSGIGPGLGCESESLSLASRLFESLDTLAMRVHHSSSSG--------DHAGLEFENRLGRKYAEEVARVSGDGRVVSEIAKVDRQSSAHWMETAGGYGGKDEKGGKSFSRQDWD-------RNNFIDESVFEGQNGIAALAGEESKECQGKENAAIIDAAASGGGHAGEEYSLSTTGMDGVVLPAVTQGHAWAARSLVAAQSTEARRPDERAQKPCAHGNA--------------RSSAACETDGTDQQMQGFFWGTARLALSPDATLRRSLHPTLAPPCPPISRGGVSVRLGERALNAKLTG--GGIASRTFDRERIRRRGDDGVQDEKSVAKAADEVVAVFPPSVVLECCLLSPLWEHCRLTDSSCLGMFVEELEIVRLAGVLRGVYMSPSGTASCSPLFRFRETLFSLLGSFP 3099
+VE +CSV+EK +MHG++ A+RLL LAS L+GKP+RV+G + A A P LEHPYAA++ L LSGSQ D R R A+ GA EL + GD SRLWSSDS EE+ ++EE + LS PG +DEG TREWL+AFE GE + G +A + + ERF V + G + PS PP + RR P RH YGA C+GADIR+L G D G F+RPCQTLEA Q+ A RRRS+PEA VVR ALHML GL GD FV D GG + RH FSLS SA SDLAVASLSP ALAG + D +RVG+ AEYLRAFVADA AA+A G+ R HG TQAF A Q+G G +GET+VG+L LLRP ESLE ++V+ G G W A +T A + G L ERTGRLL+ LH++LV+ AL+ S G+ + A APRR G LLHVF EVLAPYL L+++WITEGR+ DPHGELFFS+ GG + GG + T DPVVHVWD GIVLHSKALPPFLAPLA AVALAGQD+ LMR+VRALV R +G G SE+ SLA L ESL LA RV ++ +G D AG R R+ ++ V ++ GGK G S S + + G A A E+++E AA + G G + S GV + V ++ A PD ++ A +A G D ++ GFF GTA+LAL P A +R LHP+LAPP PP +R G R + +TG E+ A DEV PP++VLE CLL L EHCRL SSCL +F +EL V +AGVLR VY+SP G + +PL RFR LF LLG P
Sbjct: 57 KVEAAICSVAEKFVMHGKTVNATRLLLLASSLTGKPMRVEGHRMDTGGVNKAAA-ASPPLEHPYAALALALALSGSQRWAAAKEAEVEGDEREGDTPDAESIEGGGCGGSGRSARDEEXXEEREGAAELLAGFEGDSSRLWSSDSDXXXXXXXGPEEQEQEEEDGVGSLSSAL----PGVED-------VDEG-GTREWLQAFEDDGEGSPRADGCTAGEIETERFGHRGKVE---NNGASTQLAEPLAPSYSPPSSPNTGVDSKNLTRRASHPPAARHNYGAPCIGADIRNLGGRRGARDGDVDGASFLRPCQTLEACQTRGGEAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVNGDASDTGGEQLPQKGRHGAAGTRGTGXXXRTGGGSSGPSRRWGVVTGSASARRGQEWFSLSESAASDLAVASLSPEALAGVLEDLLRVGSTAEYLRAFVADAEGSASVAAEAXXXXXXXXXXXXXXXXXXXXXXASKSYGRGKERGPKHGLTTQAFVACVRRHLESFEDTVARRDRWLYRRQQGQGXXXXXXXXXXXXXXXXXSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWVATPXXXXEGVWPRNRRRRRTGDTNAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGDTEALAPRRRGWLLHVFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXXADNIGGHNRQATAVGGDPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXERKAGTGAMSSPGSETFSLAETLSESLRQLAGRVRRANDAGPSRKKDQDDGAGCTGRGRGDRRSGGXXXXXXXXXXXXXAVSPVSSSGLGGIVDLEESRGGKHGDGRNSASTESEEGATSPAXXXXXXXXXXXXGTEAEATAATEKNRESGSVSVAAPEGEDVTNDGSDGGDCS-------GVGVGGVRDRRTGSSGFGDGGXGGPATSPDVLTEEASADVGGDXXXXXXXXXXXXXXXAAEGANQGDDPEL-GFFGGTAQLALKPGAMFQRPLHPSLAPPSPPSTRQPSPAVGGRRTASCFITGISHXXXXXXXXXXXXXXXXXXXXXXEEDEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLAVFADELGTVSIAGVLRDVYLSPGGAKTDAPLSRFRGVLFGLLGGLP 1279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13502.2473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13502.2473.1 >prot_H-elongata_contig13502.2473.1 ID=prot_H-elongata_contig13502.2473.1|Name=mRNA_H-elongata_contig13502.2473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1033bp QVERTVCSVSEKLLMHGRSAEASRLLRLASRLSGKPVRVDGQCVINPNDPback to top mRNA from alignment at H-elongata_contig13502:842..6373+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13502.2473.1 ID=mRNA_H-elongata_contig13502.2473.1|Name=mRNA_H-elongata_contig13502.2473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5532bp|location=Sequence derived from alignment at H-elongata_contig13502:842..6373+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13502:842..6373+ >mRNA_H-elongata_contig13502.2473.1 ID=mRNA_H-elongata_contig13502.2473.1|Name=mRNA_H-elongata_contig13502.2473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6198bp|location=Sequence derived from alignment at H-elongata_contig13502:842..6373+ (Himanthalia elongata Himel1 dioecious)back to top |