mRNA_H-elongata_contig13501.2472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13501.2472.1
Unique NamemRNA_H-elongata_contig13501.2472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13501.2472.1 vs. uniprot
Match: A0A6H5K1Y5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Y5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.140e-79
Identity = 140/308 (45.45%), Postives = 197/308 (63.96%), Query Frame = 1 
Query:    1 LKRALKEAKRVGEAIDPDAMSQIERAWNGDEDGLHPGFRQVEDEVLRI-----------REDMQAFGEKMQGIVGDIHDKVRSRSRKGAMLDGDWSGGSVPKWDALTQQGATEMIKDLSSEVLGDAANDAVAAFEGRLAEALSEGNIRAAFDLWHRLLDIPGVQLLTRNRKLWEGAKGTVRKYLNGFMTVETRKDVHRAVNATADFALHFAGLSRNVGKTDNEIFQEISQSMCHFQGATEKLWPLMKRALPLLGYEAYISSADSVIRASVMSRVTLTVTASSLLGMSPFNDPFVMSLIAAFALGHLSK 891
            L RA ++AKR+GE ++PDA++  E+AW      L P  RQ  D+               R+          G      D+  + S      + +  G     W+ L +       + +  +V G+AA++ +A+FE RL+EALSEGN+RAA  LW RLLD PGVQLL ++R+LW GA+  VR+YL+GF++ ++ K+  RAVNATADFALHFAGLSRN  K+D+E+F+E+S  +CH QGA EKLWPL   ALPLLGY+ Y    +S IR++ +SRVT TV+A+ LLG++P  DPF+++LIA+F+LGHLSK
Sbjct:   18 LGRAFQQAKRIGEIVNPDAVANAEQAWKE----LAPDLRQAADDXXXXXXXXXXXXXXARDIWXXXXXXXSGFGAVETDRTAADSSATFAQEREEGGSVTVGWEGLKKD-IERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGVQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLAVLALPLLGYQDYAKKLESAIRSNALSRVTQTVSATVLLGLNP-RDPFLLTLIASFSLGHLSK 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13501.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Y5_9PHAE3.140e-7945.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13501contigH-elongata_contig13501:5693..7864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000280.1
Exons6
Model size891
Cds size891
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13501.2472.1prot_H-elongata_contig13501.2472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13501 5693..7864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.3087802-CDS-H-elongata_contig13501:5692..57881622929801.3087802-CDS-H-elongata_contig13501:5692..5788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 5693..5788 +
1691679162.6545427-CDS-H-elongata_contig13501:5692..57881691679162.6545427-CDS-H-elongata_contig13501:5692..5788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 5693..5788 +
1622929801.3272614-CDS-H-elongata_contig13501:6083..63171622929801.3272614-CDS-H-elongata_contig13501:6083..6317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 6084..6317 +
1691679162.6641102-CDS-H-elongata_contig13501:6083..63171691679162.6641102-CDS-H-elongata_contig13501:6083..6317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 6084..6317 +
1622929801.3441513-CDS-H-elongata_contig13501:6543..68121622929801.3441513-CDS-H-elongata_contig13501:6543..6812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 6544..6812 +
1691679162.6735938-CDS-H-elongata_contig13501:6543..68121691679162.6735938-CDS-H-elongata_contig13501:6543..6812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 6544..6812 +
1622929801.3606203-CDS-H-elongata_contig13501:7085..71611622929801.3606203-CDS-H-elongata_contig13501:7085..7161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7086..7161 +
1691679162.6828947-CDS-H-elongata_contig13501:7085..71611691679162.6828947-CDS-H-elongata_contig13501:7085..7161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7086..7161 +
1622929801.372728-CDS-H-elongata_contig13501:7467..75771622929801.372728-CDS-H-elongata_contig13501:7467..7577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7468..7577 +
1691679162.6919715-CDS-H-elongata_contig13501:7467..75771691679162.6919715-CDS-H-elongata_contig13501:7467..7577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7468..7577 +
1622929801.3929887-CDS-H-elongata_contig13501:7758..78641622929801.3929887-CDS-H-elongata_contig13501:7758..7864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7759..7864 +
1691679162.7027335-CDS-H-elongata_contig13501:7758..78641691679162.7027335-CDS-H-elongata_contig13501:7758..7864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13501 7759..7864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13501.2472.1

>prot_H-elongata_contig13501.2472.1 ID=prot_H-elongata_contig13501.2472.1|Name=mRNA_H-elongata_contig13501.2472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=297bp
LKRALKEAKRVGEAIDPDAMSQIERAWNGDEDGLHPGFRQVEDEVLRIRE
DMQAFGEKMQGIVGDIHDKVRSRSRKGAMLDGDWSGGSVPKWDALTQQGA
TEMIKDLSSEVLGDAANDAVAAFEGRLAEALSEGNIRAAFDLWHRLLDIP
GVQLLTRNRKLWEGAKGTVRKYLNGFMTVETRKDVHRAVNATADFALHFA
GLSRNVGKTDNEIFQEISQSMCHFQGATEKLWPLMKRALPLLGYEAYISS
ADSVIRASVMSRVTLTVTASSLLGMSPFNDPFVMSLIAAFALGHLSK
back to top

mRNA from alignment at H-elongata_contig13501:5693..7864+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13501.2472.1 ID=mRNA_H-elongata_contig13501.2472.1|Name=mRNA_H-elongata_contig13501.2472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2172bp|location=Sequence derived from alignment at H-elongata_contig13501:5693..7864+ (Himanthalia elongata Himel1 dioecious)
CTCAAGAGGGCGCTGAAAGAAGCGAAGCGCGTGGGAGAGGCGATCGATCC
TGACGCCATGAGTCAAATAGAACGAGCCTGGAACGGGGACGAGGACGTGA
GCTTTGCGGCGTGACCGCCGAGAATGACCGCCCAGTGTGTAAAATGTCGA
GCGTTTGGGAAAGCACGTTAGGAAGCAAAAGAGGCGGAAGGTCATCAGGG
CCGGTCGCCCTGCCTCGGGTTTCCTCGGGAAACATTTAGCCATTGGTGCC
GCAGAGCTTGTATGCGCAAACGGTAGATACGTGAGGCATGCCTCGCCCAA
CACACGATGTCATCTTTTATCAAAGCTTGTTTTCTACGCTTTTGTTATTG
TCCGTTCCCCGACGCGTGGTGATCGATCGATCGAACTACAGGGGCTCCAT
CCAGGCTTCAGGCAAGTTGAGGACGAGGTACTCCGGATACGAGAAGATAT
GCAAGCCTTTGGAGAGAAGATGCAAGGAATCGTGGGTGATATACATGACA
AAGTGAGATCGAGGAGTAGGAAAGGAGCAATGCTGGACGGTGATTGGTCG
GGTGGAAGTGTTCCGAAATGGGATGCGTTGACACAGCAGGGTGCGACCGA
AATGATCAAGGATTTATCCAGCGAAGTGAGTTGCACGCCCGCGCGAGTAC
TGCTCCGTCCGCCCGCCAAGCGCGTTCCAGGCTGCGTTCAATGTGTTTAA
TGTATACATTATGTTTTTGAATGCCAAGGAGCACGTATAATGGGGAAGAG
GGGTTTGTGAACGGTCTGACAGGCGCTGTGGGCAATACACAAGGCCATGC
CCTTCGTTCCCATCGCTTTGCGTGCGTGCGGCTGGTGCCGTCGATATACA
GGTTCTGGGCGACGCCGCTAACGATGCTGTCGCAGCGTTCGAGGGTCGAT
TGGCCGAGGCACTTTCGGAGGGCAACATCCGGGCAGCGTTCGATCTTTGG
CATCGCCTGCTGGACATCCCCGGCGTTCAGCTCTTAACCAGGAATAGAAA
GCTTTGGGAGGGCGCAAAGGGGACCGTGCGAAAGTATCTGAACGGTTTCA
TGACCGTAGAGACGAGGAAGGATGTACATCGAGCGGTCAACGCCACGGCA
GACTTCGCCCTCCACTTCGCGTGAGACAAACCGCTGACATTTTCCCGTCG
ATCAGGCGTATCTTCTGCCGCTATTACCTATGCGTATCCGAAAGCATGTC
TGACAGCGACCGGGGTGCACTACTCCACCGAGGTTTCCAACGACTCTTCT
TATCGAAAGCACCCCGAGGCTGGGAAGTAGCCCTTGCCACACCTGTGCCT
CCCGGGCTGTTGGCAGCAGTGCCTTTGGGGTAAACCCTGACCTCGAGAGT
GTCTGTCGACTACCCTTCTGACCTTTAATGATCCATTTGGCAGTGGTCTG
AGCCGGAACGTCGGAAAGACGGACAACGAAATTTTCCAGGAAATTTCTCA
GAGTATGTGCCATTTCCAGGTGAGGCCGTAGACTCCGTCGGAGGGGAGAG
GTCGATGCGCGCCCGAGCAATGCTACGGTTTCAGGCGCCGACTCACCGGC
TCAAGGGTTACGTTGTTTCGTCGTGAAGATCGCGATGCTCGTCTCGCAAT
TGCCCGCCGAGTGTGCATGCCAGAGCCATCCAGTCCAACATTATTTTTGG
GTTGATGGGCAGCGCTCGAGGTTGCATCCCACGGTTGCGGGGGGTCATGA
CACGTTCCCGGGTTGGTTTCCTAATCATATTGCCTCGGGTCCTTCTGTCT
CGTGCTTCCTGTTGGCGGGAGAAAGGGCGCCACGGAGAAGCTTTGGCCCT
TGATGAAGCGAGCGCTTCCCCTGCTTGGGTACGAGGCATACATCTCCAGC
GCAGACAGTGTGATTCGAGCAAGCGTCATGTCCAGGTACTTGACAATCCT
CGGAAACGCGTACCGTATTCTGTCGCATTCTGGGAGCTTCTCGCCTAAAA
TCTTCCCGAATCTTCCCGAAGTTATATTGAGGGTTCCTTCACGACCACCC
CCTTAACGTGTGTGCTCTTGCCTCACCTCTTTCGTGCAAAACCAATTTTC
TCCATTTCTGAAACAGGGTGACGCTGACGGTTACGGCGAGCTCGCTGCTG
GGAATGAGCCCTTTCAATGACCCTTTCGTGATGTCGTTGATTGCAGCCTT
CGCCCTGGGACATCTCAGCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13501:5693..7864+

>mRNA_H-elongata_contig13501.2472.1 ID=mRNA_H-elongata_contig13501.2472.1|Name=mRNA_H-elongata_contig13501.2472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1782bp|location=Sequence derived from alignment at H-elongata_contig13501:5693..7864+ (Himanthalia elongata Himel1 dioecious)
CTCAAGAGGGCGCTGAAAGAAGCGAAGCGCGTGGGAGAGGCGATCGATCC
TGACGCCATGAGTCAAATAGAACGAGCCTGGAACGGGGACGAGGACCTCA
AGAGGGCGCTGAAAGAAGCGAAGCGCGTGGGAGAGGCGATCGATCCTGAC
GCCATGAGTCAAATAGAACGAGCCTGGAACGGGGACGAGGACGGGCTCCA
TCCAGGCTTCAGGCAAGTTGAGGACGAGGTACTCCGGATACGAGAAGATA
TGCAAGCCTTTGGAGAGAAGATGCAAGGAATCGTGGGTGATATACATGAC
AAAGTGAGATCGAGGAGTAGGAAAGGAGCAATGCTGGACGGTGATTGGTC
GGGTGGAAGTGTTCCGAAATGGGATGCGTTGACACAGCAGGGTGCGACCG
AAATGATCAAGGATTTATCCAGCGAAGGGCTCCATCCAGGCTTCAGGCAA
GTTGAGGACGAGGTACTCCGGATACGAGAAGATATGCAAGCCTTTGGAGA
GAAGATGCAAGGAATCGTGGGTGATATACATGACAAAGTGAGATCGAGGA
GTAGGAAAGGAGCAATGCTGGACGGTGATTGGTCGGGTGGAAGTGTTCCG
AAATGGGATGCGTTGACACAGCAGGGTGCGACCGAAATGATCAAGGATTT
ATCCAGCGAAGTTCTGGGCGACGCCGCTAACGATGCTGTCGCAGCGTTCG
AGGGTCGATTGGCCGAGGCACTTTCGGAGGGCAACATCCGGGCAGCGTTC
GATCTTTGGCATCGCCTGCTGGACATCCCCGGCGTTCAGCTCTTAACCAG
GAATAGAAAGCTTTGGGAGGGCGCAAAGGGGACCGTGCGAAAGTATCTGA
ACGGTTTCATGACCGTAGAGACGAGGAAGGATGTACATCGAGCGGTCAAC
GCCACGGCAGACTTCGCCCTCCACTTCGCGTTCTGGGCGACGCCGCTAAC
GATGCTGTCGCAGCGTTCGAGGGTCGATTGGCCGAGGCACTTTCGGAGGG
CAACATCCGGGCAGCGTTCGATCTTTGGCATCGCCTGCTGGACATCCCCG
GCGTTCAGCTCTTAACCAGGAATAGAAAGCTTTGGGAGGGCGCAAAGGGG
ACCGTGCGAAAGTATCTGAACGGTTTCATGACCGTAGAGACGAGGAAGGA
TGTACATCGAGCGGTCAACGCCACGGCAGACTTCGCCCTCCACTTCGCTG
GTCTGAGCCGGAACGTCGGAAAGACGGACAACGAAATTTTCCAGGAAATT
TCTCAGAGTATGTGCCATTTCCAGTGGTCTGAGCCGGAACGTCGGAAAGA
CGGACAACGAAATTTTCCAGGAAATTTCTCAGAGTATGTGCCATTTCCAG
GGCGCCACGGAGAAGCTTTGGCCCTTGATGAAGCGAGCGCTTCCCCTGCT
TGGGTACGAGGCATACATCTCCAGCGCAGACAGTGTGATTCGAGCAAGCG
TCATGTCCAGGGCGCCACGGAGAAGCTTTGGCCCTTGATGAAGCGAGCGC
TTCCCCTGCTTGGGTACGAGGCATACATCTCCAGCGCAGACAGTGTGATT
CGAGCAAGCGTCATGTCCAGGGTGACGCTGACGGTTACGGCGAGCTCGCT
GCTGGGAATGAGCCCTTTCAATGACCCTTTCGTGATGTCGTTGATTGCAG
CCTTCGCCCTGGGACATCTCAGCAAGGGTGACGCTGACGGTTACGGCGAG
CTCGCTGCTGGGAATGAGCCCTTTCAATGACCCTTTCGTGATGTCGTTGA
TTGCAGCCTTCGCCCTGGGACATCTCAGCAAG
back to top