mRNA_H-elongata_contig134989.2469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134989.2469.1
Unique NamemRNA_H-elongata_contig134989.2469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134989.2469.1 vs. uniprot
Match: D7G8S2_ECTSI (Molecular chaperone, heat shock protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8S2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.380e-13
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MYRCPVCQGLGKTGTTLGFGGSSCPLCQGRCYLQREPTP 117
            M RCPVC+G GKTGTTLGFGG++C LC G+C+L+ EP P
Sbjct:    1 MTRCPVCEGSGKTGTTLGFGGTTCALCHGKCFLRTEPNP 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134989.2469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8S2_ECTSI2.380e-1369.23Molecular chaperone, heat shock protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134989contigH-elongata_contig134989:1577..1723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog2880.D7G8S2
EggNOG OGs2C3YS@1,2SZEP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.1381705-CDS-H-elongata_contig134989:1576..17231622929801.1381705-CDS-H-elongata_contig134989:1576..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134989 1577..1723 +
1691679162.6152735-CDS-H-elongata_contig134989:1576..17231691679162.6152735-CDS-H-elongata_contig134989:1576..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134989 1577..1723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134989.2469.1prot_H-elongata_contig134989.2469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134989 1577..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134989.2469.1

>prot_H-elongata_contig134989.2469.1 ID=prot_H-elongata_contig134989.2469.1|Name=mRNA_H-elongata_contig134989.2469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MYRCPVCQGLGKTGTTLGFGGSSCPLCQGRCYLQREPTPCPCCDAKVGL
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mRNA from alignment at H-elongata_contig134989:1577..1723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134989.2469.1 ID=mRNA_H-elongata_contig134989.2469.1|Name=mRNA_H-elongata_contig134989.2469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig134989:1577..1723+ (Himanthalia elongata Himel1 dioecious)
ATGTACCGGTGTCCCGTATGCCAGGGCCTAGGAAAAACGGGCACAACGCT
TGGTTTCGGTGGTAGCTCCTGTCCGCTTTGTCAAGGCCGCTGCTACCTCC
AGAGAGAGCCCACCCCGTGCCCGTGCTGCGACGCTAAGGTGGGTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig134989:1577..1723+

>mRNA_H-elongata_contig134989.2469.1 ID=mRNA_H-elongata_contig134989.2469.1|Name=mRNA_H-elongata_contig134989.2469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig134989:1577..1723+ (Himanthalia elongata Himel1 dioecious)
ATGTACCGGTGTCCCGTATGCCAGGGCCTAGGAAAAACGGGCACAACGCT
TGGTTTCGGTGGTAGCTCCTGTCCGCTTTGTCAAGGCCGCTGCTACCTCC
AGAGAGAGCCCACCCCGTGCCCGTGCTGCGACGCTAAGGTGGGTTTAATG
TACCGGTGTCCCGTATGCCAGGGCCTAGGAAAAACGGGCACAACGCTTGG
TTTCGGTGGTAGCTCCTGTCCGCTTTGTCAAGGCCGCTGCTACCTCCAGA
GAGAGCCCACCCCGTGCCCGTGCTGCGACGCTAAGGTGGGTTTA
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