mRNA_H-elongata_contig134975.2468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134975.2468.1
Unique NamemRNA_H-elongata_contig134975.2468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: D8LBU4_ECTSI (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 5.370e-20
Identity = 37/45 (82.22%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QGSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            +G+T+KEYFFW+AES+D+P+EDPL+LWLTGGPGCSSTLALLAENG
Sbjct:   52 EGATDKEYFFWMAESQDSPSEDPLILWLTGGPGCSSTLALLAENG 96
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A6S9GAZ6_HETAK (Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GAZ6_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 5.680e-17
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS NK YFFW  ESRD+P+ DPL++WLTGGPGCSS LALLAENG
Sbjct:   65 GSVNKNYFFWFFESRDSPSTDPLIIWLTGGPGCSSILALLAENG 108
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A7R9ZWQ2_9DINO (Carboxypeptidase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZWQ2_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 3.890e-16
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS N  YFFWL ESR NP  DPLV+WLTGGPGCSS LALLAENG
Sbjct:   92 GSANTAYFFWLFESRGNPEADPLVMWLTGGPGCSSQLALLAENG 135
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A7S1NCC5_9EUGL (Carboxypeptidase n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NCC5_9EUGL)

HSP 1 Score: 78.6 bits (192), Expect = 7.110e-16
Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   16 KEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            KEYFFWL ESR  PA DPLVLWLTGGPGCSS LALLAENG
Sbjct:   71 KEYFFWLHESRSKPATDPLVLWLTGGPGCSSQLALLAENG 110
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A0A7CM09_9STRA (Carboxypeptidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CM09_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.700e-15
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS +K YFFW  ESR NP +DP+++WLTGGPGCSS LALL ENG
Sbjct:   60 GSKSKNYFFWFFESRGNPKDDPVIIWLTGGPGCSSMLALLGENG 103
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A0P1B326_PLAHL (Carboxypeptidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B326_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 6.420e-15
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS +K YF+W  ESR +P+ DPL++WLTGGPGCSSTLALL ENG
Sbjct:   51 GSKSKNYFYWFFESRGSPSTDPLIIWLTGGPGCSSTLALLLENG 94
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A067D239_SAPPC (Carboxypeptidase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D239_SAPPC)

HSP 1 Score: 74.7 bits (182), Expect = 1.650e-14
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS +K YF+W  ESRD P +DP+++WLTGGPGCSS LALL ENG
Sbjct:   60 GSKSKNYFYWFFESRDAPKDDPVIIWLTGGPGCSSMLALLGENG 103
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: K3XCD6_GLOUD (Carboxypeptidase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCD6_GLOUD)

HSP 1 Score: 74.7 bits (182), Expect = 1.650e-14
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 GSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            GS +K YF+W  ESR  P+ DPL++WLTGGPGCSSTLALL ENG
Sbjct:   64 GSKSKNYFYWFFESRGTPSIDPLIIWLTGGPGCSSTLALLEENG 107
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A2R5GN04_9STRA (Carboxypeptidase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GN04_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.670e-14
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   13 NKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            NK YFFW  ESR++PA DP++LWLTGGPGCSS+LAL  ENG
Sbjct:  170 NKHYFFWFFESRNDPANDPVILWLTGGPGCSSSLALFVENG 210
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BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Match: A0A7S2TIW7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIW7_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 2.190e-14
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 QGSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG 135
            +GS N  YFFW  ESR NP  DP++LW+TGGPGCSS +AL  ENG
Sbjct:   62 EGSRNLNYFFWHFESRGNPETDPVILWMTGGPGCSSAVALFHENG 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134975.2468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU4_ECTSI5.370e-2082.22Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6S9GAZ6_HETAK5.680e-1777.27Carboxypeptidase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A7R9ZWQ2_9DINO3.890e-1679.55Carboxypeptidase n=1 Tax=Pyrodinium bahamense TaxI... [more]
A0A7S1NCC5_9EUGL7.110e-1687.50Carboxypeptidase n=2 Tax=Eutreptiella gymnastica T... [more]
A0A0A7CM09_9STRA4.700e-1570.45Carboxypeptidase n=1 Tax=Thraustotheca clavata Tax... [more]
A0A0P1B326_PLAHL6.420e-1570.45Carboxypeptidase n=1 Tax=Plasmopara halstedii TaxI... [more]
A0A067D239_SAPPC1.650e-1468.18Carboxypeptidase n=2 Tax=Saprolegnia TaxID=4769 Re... [more]
K3XCD6_GLOUD1.650e-1470.45Carboxypeptidase n=1 Tax=Globisporangium ultimum (... [more]
A0A2R5GN04_9STRA1.670e-1473.17Carboxypeptidase n=1 Tax=Hondaea fermentalgiana Ta... [more]
A0A7S2TIW7_9EUKA2.190e-1464.44Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134975contigH-elongata_contig134975:1523..1657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D8LBU4
KEGG koko:K09645,ko:K13289,ko:K16298
KEGG Pathwayko04142,ko04614,map04142,map04614
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.0877392-CDS-H-elongata_contig134975:1522..16571622929801.0877392-CDS-H-elongata_contig134975:1522..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134975 1523..1657 +
1691679162.6057224-CDS-H-elongata_contig134975:1522..16571691679162.6057224-CDS-H-elongata_contig134975:1522..1657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134975 1523..1657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134975.2468.1prot_H-elongata_contig134975.2468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134975 1523..1657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134975.2468.1

>prot_H-elongata_contig134975.2468.1 ID=prot_H-elongata_contig134975.2468.1|Name=mRNA_H-elongata_contig134975.2468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QGSTNKEYFFWLAESRDNPAEDPLVLWLTGGPGCSSTLALLAENG
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mRNA from alignment at H-elongata_contig134975:1523..1657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134975.2468.1 ID=mRNA_H-elongata_contig134975.2468.1|Name=mRNA_H-elongata_contig134975.2468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig134975:1523..1657+ (Himanthalia elongata Himel1 dioecious)
CAAGGATCAACCAACAAGGAGTACTTTTTCTGGCTGGCGGAATCTCGAGA
CAACCCCGCGGAAGACCCGCTAGTGCTGTGGCTCACCGGCGGACCGGGTT
GCTCTTCGACGCTGGCGCTCTTGGCTGAAAACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig134975:1523..1657+

>mRNA_H-elongata_contig134975.2468.1 ID=mRNA_H-elongata_contig134975.2468.1|Name=mRNA_H-elongata_contig134975.2468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig134975:1523..1657+ (Himanthalia elongata Himel1 dioecious)
CAAGGATCAACCAACAAGGAGTACTTTTTCTGGCTGGCGGAATCTCGAGA
CAACCCCGCGGAAGACCCGCTAGTGCTGTGGCTCACCGGCGGACCGGGTT
GCTCTTCGACGCTGGCGCTCTTGGCTGAAAACGGTCAAGGATCAACCAAC
AAGGAGTACTTTTTCTGGCTGGCGGAATCTCGAGACAACCCCGCGGAAGA
CCCGCTAGTGCTGTGGCTCACCGGCGGACCGGGTTGCTCTTCGACGCTGG
CGCTCTTGGCTGAAAACGGT
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