mRNA_H-elongata_contig134945.2467.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 200 bits (508), Expect = 3.400e-55 Identity = 106/235 (45.11%), Postives = 136/235 (57.87%), Query Frame = 1
Query: 1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSALGAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARDLPKLL 705
L+ + PRN TL LR KHP E IAEA A + PP G I +++PF + IR+ NPQ +PGPS LR LQ +L IA+L +F LP W LHT ANLSA+G K RP+A GD+FRRI+G C Y L HFEP+GQ+GVA PGG +L+A L +G +L++D + F+S+ R A LPAL +IP YATN+YAR+ PKLL
Sbjct: 1102 LLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSR-IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLL 1335
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO) HSP 1 Score: 72.8 bits (177), Expect = 3.440e-11 Identity = 67/243 (27.57%), Postives = 99/243 (40.74%), Query Frame = 1
Query: 1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQD----VRDDDLEVEIARLSRTVFKSETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV-----SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARD 690
L+ PR+ TL+ L+ KHP+ +A G P P A + F A+ A+R SAPGPS LR HL++ D++ V +A L + + E P A H GA L AL RP+A G+V RR++G C + P Q GV P G + A S E ++ D + F+++ R + L +P S +A Y +
Sbjct: 136 LLQEPPLPRDAATLAALQAKHPQSPLPDLAAL-------------GAPRPGAVPE--FSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEA--PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRASVLREARARVPEVSSWADWCYGQS 360
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A812KQM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KQM1_9DINO) HSP 1 Score: 72.4 bits (176), Expect = 5.270e-11 Identity = 67/243 (27.57%), Postives = 99/243 (40.74%), Query Frame = 1
Query: 1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQD----VRDDDLEVEIARLSRTVFKSETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV-----SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARD 690
L+ PR+ TL+ L+ KHP+ +A G P P A + F A+ A+R SAPGPS LR HL++ D++ V +A L + + E P A H GA L AL RP+A G+V RR++G C + P Q GV P G + A S E ++ D + F+++ R + L +P S +A Y +
Sbjct: 203 LLQEPPLPRDAATLAALQAKHPQSPLPDLAAL-------------GAPRPGAVPE--FSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLGRGEA--PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRTSVLREARARVPEVSSWADWCYGQS 427
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A1Q9DL84_SYMMI (132 kDa protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DL84_SYMMI) HSP 1 Score: 61.2 bits (147), Expect = 3.540e-7 Identity = 53/199 (26.63%), Postives = 85/199 (42.71%), Query Frame = 1
Query: 127 PPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDV----RDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSAL---GAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV---SLGFAEGCT--ILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYAR 687
PP PL + P + ++R ++APGP+ LR HL+D + ++A + + + + P V + GA L AL RP+A G++FRR+ G + ++ HF P Q GVA GG + AV + A T ++ D F+ I R A L T P + ++ Y +
Sbjct: 405 PPSDRPLQSLPLAPDIAPELVARSLRAFPAETAPGPTGLRVQHLRDACTAGSRESFLTQLAAVVQLLAQGRA-PSFVAPVLAGAGLVALPKPSGGVRPIAVGEIFRRLTGKCLMALVQQEARTHFWPA-QVGVAVKGGAEKAVHAVRAWAQRHAGSATKALVKLDFTNAFNCISREAVLQQACTDFPALARWSVWCYRQ 601
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A433BTR1_9BURK (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Curvibacter sp. TaxID=1888168 RepID=A0A433BTR1_9BURK) HSP 1 Score: 58.9 bits (141), Expect = 1.650e-6 Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1
Query: 361 GANLSAL---GAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVD---LMARAVSLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLY 681
GA L AL G RP+ACGDVFRRI + S++L+ Q GV P G + L AR + +E +L D K F++I R++F+ +++ +P + Y
Sbjct: 35 GARLFALQKAGGGIRPIACGDVFRRIAARILAGNASRQLSPFLFSNRQVGVQAPCGAEAAQLAARRFAAAASEEDVVLKLDFKNAFNTIARQSFVEGVSSRVPALLPHVWAAY 147
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A813HER3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HER3_POLGL) HSP 1 Score: 58.5 bits (140), Expect = 2.580e-6 Identity = 53/194 (27.32%), Postives = 80/194 (41.24%), Query Frame = 1
Query: 145 LPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDV-----RDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSALGAKA---RPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSLGFAEGCT-----ILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYAR 687
LP+A + + + +SAPGPS LR HL + R LE ++ + + + + E P V GA L A+ RP+A G+V RRI+G C+ ++ F P Q GVACP G+D R+ T +L D F + R L P + ++ Y+R
Sbjct: 63 LPLAAV---IGQEVVSKVLHSFPQESAPGPSSLRVQHLLEGLTPAHRAAVLE-QLTAVVQLLVRGEA-PEAVAPTLAGAGLFAMPKATGGVRPIAIGEVLRRIVGKCLCASVKEEAKRFFHPS-QVGVACPTGIDAAVRSARAWKNRSATDTSKALLKLDFANAFHCVSRSQVLEQTRRHFPSLARWSQWCYSR 250
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A6P7U4Z7_OCTVU (uncharacterized protein LOC115229886 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7U4Z7_OCTVU) HSP 1 Score: 56.6 bits (135), Expect = 1.190e-5 Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 1
Query: 196 AIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTV------FKSETLPPLVWALHTGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV---SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYA 684
A+R +P S+ G LR HL+D+ +L R++ F S ++P + ANL+ALG K RP+A G++FRR+ C L+ F P Q GV P G + ++ + F E ++ D F+SI R L ++ A LYA
Sbjct: 499 ALRDFSPGSSGGVDGLRPGHLKDLTSPTTAEASRKLLRSITNLCNRFISGSIPDFARDIFFSANLTALGKKDNGVRPIAVGNIFRRLSAKLLCRAIVPCLSSKFLPV-QLGVGVPNGCEAAVHSIRDLTESFEE-FIVVKLDVSNAFNSIRRDHLLECCRELVLFAYPLVHLLYA 671
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A813DQF9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DQF9_POLGL) HSP 1 Score: 55.5 bits (132), Expect = 2.760e-5 Identity = 54/182 (29.67%), Postives = 77/182 (42.31%), Query Frame = 1
Query: 187 IGDAIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTVFK--SETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSL-------GFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARDL 693
+ +R SA GPS LR HL D R D + V + + P A H GA+L AL RP+A G+V RRI G CS + F+P Q GVACP GVD ++ A+G ++ D + F+ + R A L + P + +A ++L
Sbjct: 10 VDKVLRSFPLDSAAGPSGLRVQHLLDARTSDQGNSMIEQQAEVVHLLARGMAPHDLAQHLAGASLMALDKPHRGVRPIASGEVLRRITGKCLCSVVKETAQTFFKPS-QVGVACPFGVDAAIQSCRAWTQREHGNRAKG--LVKLDFRSAFNCVDRGAALRQIRHNFPELARWAQWCVMQNL 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig134945.2467.1 >prot_H-elongata_contig134945.2467.1 ID=prot_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPback to top mRNA from alignment at H-elongata_contig134945:109..813+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig134945.2467.1 ID=mRNA_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig134945:109..813+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig134945:109..813+ >mRNA_H-elongata_contig134945.2467.1 ID=mRNA_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig134945:109..813+ (Himanthalia elongata Himel1 dioecious)back to top |