mRNA_H-elongata_contig134945.2467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134945.2467.1
Unique NamemRNA_H-elongata_contig134945.2467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 200 bits (508), Expect = 3.400e-55
Identity = 106/235 (45.11%), Postives = 136/235 (57.87%), Query Frame = 1
Query:    1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSALGAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARDLPKLL 705
            L+   + PRN  TL  LR KHP E    IAEA   A   +  PP G    I  +++PF    +   IR+ NPQ +PGPS LR   LQ     +L   IA+L   +F    LP   W LHT ANLSA+G K RP+A GD+FRRI+G   C  Y   L  HFEP+GQ+GVA PGG +L+A    L   +G  +L++D +  F+S+ R A LPAL  +IP    YATN+YAR+ PKLL
Sbjct: 1102 LLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSR-IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLL 1335          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A812N9S6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N9S6_9DINO)

HSP 1 Score: 72.8 bits (177), Expect = 3.440e-11
Identity = 67/243 (27.57%), Postives = 99/243 (40.74%), Query Frame = 1
Query:    1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQD----VRDDDLEVEIARLSRTVFKSETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV-----SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARD 690
            L+     PR+  TL+ L+ KHP+     +A               G P P A  +  F   A+  A+R     SAPGPS LR  HL++       D++ V +A L   + + E   P   A H  GA L AL       RP+A G+V RR++G   C    +       P  Q GV  P G +    A      S    E   ++  D +  F+++ R + L      +P  S +A   Y + 
Sbjct:  136 LLQEPPLPRDAATLAALQAKHPQSPLPDLAAL-------------GAPRPGAVPE--FSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLARGEA--PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRASVLREARARVPEVSSWADWCYGQS 360          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A812KQM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KQM1_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 5.270e-11
Identity = 67/243 (27.57%), Postives = 99/243 (40.74%), Query Frame = 1
Query:    1 LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQD----VRDDDLEVEIARLSRTVFKSETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV-----SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARD 690
            L+     PR+  TL+ L+ KHP+     +A               G P P A  +  F   A+  A+R     SAPGPS LR  HL++       D++ V +A L   + + E   P   A H  GA L AL       RP+A G+V RR++G   C    +       P  Q GV  P G +    A      S    E   ++  D +  F+++ R + L      +P  S +A   Y + 
Sbjct:  203 LLQEPPLPRDAATLAALQAKHPQSPLPDLAAL-------------GAPRPGAVPE--FSAEAVAKAVRSFKRASAPGPSGLRPDHLRESLSTAHADEVAVHLAALCHLLGRGEA--PATLAPHLAGATLHALPKPQGGVRPIAIGEVLRRLVGKLLCGSVREAARDQLWPL-QVGVGVPSGSEAAVHAARHWLQSHSGHENRVLVKLDFRNAFNAVSRTSVLREARARVPEVSSWADWCYGQS 427          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A1Q9DL84_SYMMI (132 kDa protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DL84_SYMMI)

HSP 1 Score: 61.2 bits (147), Expect = 3.540e-7
Identity = 53/199 (26.63%), Postives = 85/199 (42.71%), Query Frame = 1
Query:  127 PPKGTPLPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDV----RDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSAL---GAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV---SLGFAEGCT--ILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYAR 687
            PP   PL    +     P  +  ++R    ++APGP+ LR  HL+D       +    ++A + + + +    P  V  +  GA L AL       RP+A G++FRR+ G    +   ++   HF P  Q GVA  GG +    AV   +   A   T  ++  D    F+ I R A L    T  P  + ++   Y +
Sbjct:  405 PPSDRPLQSLPLAPDIAPELVARSLRAFPAETAPGPTGLRVQHLRDACTAGSRESFLTQLAAVVQLLAQGRA-PSFVAPVLAGAGLVALPKPSGGVRPIAVGEIFRRLTGKCLMALVQQEARTHFWPA-QVGVAVKGGAEKAVHAVRAWAQRHAGSATKALVKLDFTNAFNCISREAVLQQACTDFPALARWSVWCYRQ 601          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A433BTR1_9BURK (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Curvibacter sp. TaxID=1888168 RepID=A0A433BTR1_9BURK)

HSP 1 Score: 58.9 bits (141), Expect = 1.650e-6
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1
Query:  361 GANLSAL---GAKARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVD---LMARAVSLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLY 681
            GA L AL   G   RP+ACGDVFRRI       + S++L+       Q GV  P G +   L AR  +   +E   +L  D K  F++I R++F+  +++ +P    +    Y
Sbjct:   35 GARLFALQKAGGGIRPIACGDVFRRIAARILAGNASRQLSPFLFSNRQVGVQAPCGAEAAQLAARRFAAAASEEDVVLKLDFKNAFNTIARQSFVEGVSSRVPALLPHVWAAY 147          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A813HER3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HER3_POLGL)

HSP 1 Score: 58.5 bits (140), Expect = 2.580e-6
Identity = 53/194 (27.32%), Postives = 80/194 (41.24%), Query Frame = 1
Query:  145 LPIAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDV-----RDDDLEVEIARLSRTVFKSETLPPLVWALHTGANLSALGAKA---RPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSLGFAEGCT-----ILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYAR 687
            LP+A +        +   +     +SAPGPS LR  HL +      R   LE ++  + + + + E  P  V     GA L A+       RP+A G+V RRI+G   C+   ++    F P  Q GVACP G+D   R+         T     +L  D    F  + R   L       P  + ++   Y+R
Sbjct:   63 LPLAAV---IGQEVVSKVLHSFPQESAPGPSSLRVQHLLEGLTPAHRAAVLE-QLTAVVQLLVRGEA-PEAVAPTLAGAGLFAMPKATGGVRPIAIGEVLRRIVGKCLCASVKEEAKRFFHPS-QVGVACPTGIDAAVRSARAWKNRSATDTSKALLKLDFANAFHCVSRSQVLEQTRRHFPSLARWSQWCYSR 250          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A6P7U4Z7_OCTVU (uncharacterized protein LOC115229886 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7U4Z7_OCTVU)

HSP 1 Score: 56.6 bits (135), Expect = 1.190e-5
Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 1
Query:  196 AIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTV------FKSETLPPLVWALHTGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAV---SLGFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYA 684
            A+R  +P S+ G   LR  HL+D+          +L R++      F S ++P     +   ANL+ALG K    RP+A G++FRR+     C      L+  F P  Q GV  P G +    ++   +  F E   ++  D    F+SI R   L     ++  A      LYA
Sbjct:  499 ALRDFSPGSSGGVDGLRPGHLKDLTSPTTAEASRKLLRSITNLCNRFISGSIPDFARDIFFSANLTALGKKDNGVRPIAVGNIFRRLSAKLLCRAIVPCLSSKFLPV-QLGVGVPNGCEAAVHSIRDLTESFEE-FIVVKLDVSNAFNSIRRDHLLECCRELVLFAYPLVHLLYA 671          
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Match: A0A813DQF9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DQF9_POLGL)

HSP 1 Score: 55.5 bits (132), Expect = 2.760e-5
Identity = 54/182 (29.67%), Postives = 77/182 (42.31%), Query Frame = 1
Query:  187 IGDAIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIARLSRTVFK--SETLPPLVWALH-TGANLSALGAK---ARPVACGDVFRRIIGATFCSDYSKKLTGHFEPKGQHGVACPGGVDLMARAVSL-------GFAEGCTILSFDGKKVFSSIYRRAFLPALTTVIPVASGYATNLYARDL 693
            +   +R     SA GPS LR  HL D R  D    +      V    +  + P   A H  GA+L AL       RP+A G+V RRI G   CS   +     F+P  Q GVACP GVD   ++            A+G  ++  D +  F+ + R A L  +    P  + +A     ++L
Sbjct:   10 VDKVLRSFPLDSAAGPSGLRVQHLLDARTSDQGNSMIEQQAEVVHLLARGMAPHDLAQHLAGASLMALDKPHRGVRPIASGEVLRRITGKCLCSVVKETAQTFFKPS-QVGVACPFGVDAAIQSCRAWTQREHGNRAKG--LVKLDFRSAFNCVDRGAALRQIRHNFPELARWAQWCVMQNL 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134945.2467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN3.400e-5545.11Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A812N9S6_9DINO3.440e-1127.57Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812KQM1_9DINO5.270e-1127.57Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A1Q9DL84_SYMMI3.540e-726.63132 kDa protein n=2 Tax=Symbiodinium microadriatic... [more]
A0A433BTR1_9BURK1.650e-632.74Reverse transcriptase domain-containing protein (F... [more]
A0A813HER3_POLGL2.580e-627.32Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6P7U4Z7_OCTVU1.190e-528.57uncharacterized protein LOC115229886 n=1 Tax=Octop... [more]
A0A813DQF9_POLGL2.760e-529.67Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134945contigH-elongata_contig134945:109..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size705
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929801.037744-CDS-H-elongata_contig134945:108..8131622929801.037744-CDS-H-elongata_contig134945:108..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134945 109..813 +
1691679162.596999-CDS-H-elongata_contig134945:108..8131691679162.596999-CDS-H-elongata_contig134945:108..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134945 109..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134945.2467.1prot_H-elongata_contig134945.2467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134945 109..813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134945.2467.1

>prot_H-elongata_contig134945.2467.1 ID=prot_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=235bp
LIPSDAAPRNEITLSILRDKHPREDPAAIAEAKARAAKYVHEPPKGTPLP
IAEIDQPFEPSAIGDAIRKVNPQSAPGPSVLRHCHLQDVRDDDLEVEIAR
LSRTVFKSETLPPLVWALHTGANLSALGAKARPVACGDVFRRIIGATFCS
DYSKKLTGHFEPKGQHGVACPGGVDLMARAVSLGFAEGCTILSFDGKKVF
SSIYRRAFLPALTTVIPVASGYATNLYARDLPKLL
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mRNA from alignment at H-elongata_contig134945:109..813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134945.2467.1 ID=mRNA_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig134945:109..813+ (Himanthalia elongata Himel1 dioecious)
CTCATACCCTCCGACGCGGCCCCGAGAAACGAAATCACCTTGAGCATCCT GCGAGACAAGCACCCCAGGGAGGACCCCGCCGCCATCGCCGAAGCCAAAG CGAGGGCCGCGAAGTATGTCCACGAGCCGCCCAAGGGGACACCGCTCCCA ATCGCCGAGATCGACCAACCCTTCGAGCCGAGCGCTATCGGCGACGCTAT CAGGAAGGTCAACCCTCAGAGTGCGCCCGGTCCATCGGTTCTGCGCCACT GCCACCTGCAGGATGTACGGGACGACGACTTGGAGGTAGAAATTGCTAGG CTGTCACGCACCGTATTCAAGAGCGAAACCTTACCGCCCCTGGTTTGGGC ACTTCACACAGGCGCCAACCTTTCTGCGCTGGGAGCAAAAGCAAGGCCGG TTGCATGCGGCGACGTCTTTCGCCGGATTATCGGAGCAACTTTCTGCAGT GACTACAGCAAGAAGTTGACCGGACACTTCGAGCCGAAGGGGCAGCACGG CGTCGCCTGCCCAGGTGGAGTCGATCTCATGGCTCGAGCCGTCAGCCTCG GCTTTGCCGAGGGGTGCACCATTCTGTCATTCGACGGCAAGAAGGTCTTC AGCTCTATCTACCGCCGCGCGTTCTTGCCGGCCCTGACAACGGTGATCCC GGTGGCATCCGGTTACGCTACGAACCTGTACGCACGCGATCTGCCCAAGC TACTC
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Coding sequence (CDS) from alignment at H-elongata_contig134945:109..813+

>mRNA_H-elongata_contig134945.2467.1 ID=mRNA_H-elongata_contig134945.2467.1|Name=mRNA_H-elongata_contig134945.2467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1410bp|location=Sequence derived from alignment at H-elongata_contig134945:109..813+ (Himanthalia elongata Himel1 dioecious)
CTCATACCCTCCGACGCGGCCCCGAGAAACGAAATCACCTTGAGCATCCT
GCGAGACAAGCACCCCAGGGAGGACCCCGCCGCCATCGCCGAAGCCAAAG
CGAGGGCCGCGAAGTATGTCCACGAGCCGCCCAAGGGGACACCGCTCCCA
ATCGCCGAGATCGACCAACCCTTCGAGCCGAGCGCTATCGGCGACGCTAT
CAGGAAGGTCAACCCTCAGAGTGCGCCCGGTCCATCGGTTCTGCGCCACT
GCCACCTGCAGGATGTACGGGACGACGACTTGGAGGTAGAAATTGCTAGG
CTGTCACGCACCGTATTCAAGAGCGAAACCTTACCGCCCCTGGTTTGGGC
ACTTCACACAGGCGCCAACCTTTCTGCGCTGGGAGCAAAAGCAAGGCCGG
TTGCATGCGGCGACGTCTTTCGCCGGATTATCGGAGCAACTTTCTGCAGT
GACTACAGCAAGAAGTTGACCGGACACTTCGAGCCGAAGGGGCAGCACGG
CGTCGCCTGCCCAGGTGGAGTCGATCTCATGGCTCGAGCCGTCAGCCTCG
GCTTTGCCGAGGGGTGCACCATTCTGTCATTCGACGGCAAGAAGGTCTTC
AGCTCTATCTACCGCCGCGCGTTCTTGCCGGCCCTGACAACGGTGATCCC
GGTGGCATCCGGTTACGCTACGAACCTGTACGCACGCGATCTGCCCAAGC
TACTCCTCATACCCTCCGACGCGGCCCCGAGAAACGAAATCACCTTGAGC
ATCCTGCGAGACAAGCACCCCAGGGAGGACCCCGCCGCCATCGCCGAAGC
CAAAGCGAGGGCCGCGAAGTATGTCCACGAGCCGCCCAAGGGGACACCGC
TCCCAATCGCCGAGATCGACCAACCCTTCGAGCCGAGCGCTATCGGCGAC
GCTATCAGGAAGGTCAACCCTCAGAGTGCGCCCGGTCCATCGGTTCTGCG
CCACTGCCACCTGCAGGATGTACGGGACGACGACTTGGAGGTAGAAATTG
CTAGGCTGTCACGCACCGTATTCAAGAGCGAAACCTTACCGCCCCTGGTT
TGGGCACTTCACACAGGCGCCAACCTTTCTGCGCTGGGAGCAAAAGCAAG
GCCGGTTGCATGCGGCGACGTCTTTCGCCGGATTATCGGAGCAACTTTCT
GCAGTGACTACAGCAAGAAGTTGACCGGACACTTCGAGCCGAAGGGGCAG
CACGGCGTCGCCTGCCCAGGTGGAGTCGATCTCATGGCTCGAGCCGTCAG
CCTCGGCTTTGCCGAGGGGTGCACCATTCTGTCATTCGACGGCAAGAAGG
TCTTCAGCTCTATCTACCGCCGCGCGTTCTTGCCGGCCCTGACAACGGTG
ATCCCGGTGGCATCCGGTTACGCTACGAACCTGTACGCACGCGATCTGCC
CAAGCTACTC
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