mRNA_H-elongata_contig13494.2466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13494.2466.1
Unique NamemRNA_H-elongata_contig13494.2466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.510e-92
Identity = 146/223 (65.47%), Postives = 171/223 (76.68%), Query Frame = 1 
Query:   10 DADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            D +TLRIM++TDNHLGY E+DP+RG DSFAA EE+L LA++ K D VLL GDLFH+NKPS+RTL++TMEILRR+ MG  PV FQI+S+Q  N +S    G VNYED Y+SV LPIFSIHGNHDDPT DGG E  AALDLL V+ LVNYFG  D VD VEV+PIL++KG T++ALYG+GSMRDERLNRMW  KKVRFLRP  E            FF +F LHQ
Sbjct:   74 DDETLRIMLSTDNHLGYCEKDPIRGSDSFAALEEVLSLARRHKCDMVLLAGDLFHDNKPSRRTLHKTMEILRRYCMGPNPVQFQIVSDQAANFRSVH--GTVNYEDSYYSVDLPIFSIHGNHDDPTRDGGTEMLAALDLLSVSNLVNYFGRHDEVDKVEVSPILIRKGSTRVALYGMGSMRDERLNRMWQGKKVRFLRP--EVDAEDDDEEENAFFNIFALHQ 292
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BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 284 bits (726), Expect = 6.740e-91
Identity = 136/223 (60.99%), Postives = 175/223 (78.48%), Query Frame = 1 
Query:   10 DADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            D +TLR++++TDNHLGY+E+DP+RG DSFAAFEE+L LA+ +KAD VLL GD+FH+NKPS+RTL++TMEILRR+ MG + V FQI+S+Q    +S    G  NYED Y+SV +PIF+IHGNHDDPT DGG E  +ALDLL V+ L+NYFG  D VD+V+V+P+L+QKG TK+ALYG+GSMRDERLNRMW  KKV+FLRP+E+            +F +F LHQ
Sbjct:    1 DDNTLRVLLSTDNHLGYLERDPIRGLDSFAAFEEVLSLARSQKADLVLLSGDVFHDNKPSRRTLHKTMEILRRYCMGGESVGFQIVSDQKECLRSVVT-GRANYEDEYYSVDMPIFAIHGNHDDPTRDGGTELLSALDLLSVSNLINYFGRQDQVDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLRPEEDD---------NRWFNIFTLHQ 213
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BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A7S1ZX37_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZX37_TRICV)

HSP 1 Score: 275 bits (702), Expect = 1.080e-90
Identity = 133/201 (66.17%), Postives = 161/201 (80.10%), Query Frame = 1 
Query:   10 DADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKE 612
            D  TLRIM++TDNHLGY E+DP+RG DSFAAFEE+L LAK+ K D VLL GDLFH+NKPS+RTL++ MEI+R + MG  PV F+++S+Q  + +SS   G VNYED  +SV LPIFSIH NHD+PT DGG E  AALDLL V  LVNYFG  D VD VEV+P+LM+KG+T++ALYG+GSMRDERLNRMW  KKVRFL+P E
Sbjct:    7 DEHTLRIMISTDNHLGYAERDPIRGLDSFAAFEEVLSLAKRHKCDMVLLAGDLFHDNKPSRRTLHKAMEIVRTYCMGPNPVQFRVVSDQGTDFRSSVS-GTVNYEDENYSVDLPIFSIHANHDNPTSDGGTEMLAALDLLAVTNLVNYFGRQDEVDRVEVSPVLMRKGDTRVALYGMGSMRDERLNRMWRGKKVRFLKPAE 206
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC)

HSP 1 Score: 284 bits (726), Expect = 5.630e-90
Identity = 142/226 (62.83%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:    1 EAPDADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            E PD  TLR+M++TDNHLGY E+DPVRG DSFAAFEE+L LAKQ + D VL+ GDLFH+N+PS+RTLY TMEI+RR+ MG  PV  QI+S+Q  N ++    G VNY+D  +SV LPIFSIHGNHDDPT D   E  AALDLL V+ LVNYFG  + VD VE++P+L+QKG T+LALYG+GSMRDERLNRMW  KKVRFLRP E+            FF LF LHQ
Sbjct:   25 EDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVS--GTVNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTG---FFNLFTLHQ 245
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BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.050e-89
Identity = 146/189 (77.25%), Postives = 161/189 (85.19%), Query Frame = 1 
Query:  112 ILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            +LLLAK+RK DFVLLGGDLFHENKPS+RTLY+TM+ILRRH MGD+PVSFQIISEQ HN K   +FG VNYEDPYFSVGLPIFSIHGNHDDPT +GG+EA AALDLLHVA LVNYFG S+ VDDVEVNPIL+QKG TK+ALYG+GSMRDERLNRMW QKKVRFLRP E+          K FF +FVLHQ
Sbjct:    1 MLLLAKERKVDFVLLGGDLFHENKPSRRTLYQTMDILRRHCMGDEPVSFQIISEQAHNFKD--RFGHVNYEDPYFSVGLPIFSIHGNHDDPTREGGVEALAALDLLHVANLVNYFGKSNKVDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGG-------KDFFNVFVLHQ 180
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: W7UA87_9STRA (Meiotic recombination 11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA87_9STRA)

HSP 1 Score: 279 bits (714), Expect = 2.590e-89
Identity = 140/232 (60.34%), Postives = 169/232 (72.84%), Query Frame = 1 
Query:    1 EAPDADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSK----SSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLR--PKEEXXXXXXXXXXKHFFKLFVLHQ 678
            E PD DTLR+M+ATDNH+G++E+DPVRG DSFAA EEI L AK+   DFVLLGGDLFHENKPS++TL+ TM ILRRH +G  PVSFQ+IS+     +    S   F  VNYEDP ++VGLP+FSIHGNHDDPT DG  E  +A+DLL +  LVNYFG +   D VEV P+L+QKG T +ALYGLG+MRDERLNRMW +KK++FLR  P+E             FF LF LHQ
Sbjct:    6 EPPDEDTLRVMIATDNHVGFLERDPVRGLDSFAALEEIFLRAKEYHVDFVLLGGDLFHENKPSRKTLHSTMAILRRHCLGSTPVSFQVISDPAPQGEGQEASPPAFSHVNYEDPNYAVGLPVFSIHGNHDDPTRDGPSEPLSAMDLLGMTNLVNYFGKASATDAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPD-------FFSLFALHQ 230
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC)

HSP 1 Score: 284 bits (726), Expect = 1.720e-87
Identity = 142/226 (62.83%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:    1 EAPDADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            E PD  TLR+M++TDNHLGY E+DPVRG DSFAAFEE+L LAKQ + D VL+ GDLFH+N+PS+RTLY TMEI+RR+ MG  PV  QI+S+Q  N ++    G VNY+D  +SV LPIFSIHGNHDDPT D   E  AALDLL V+ LVNYFG  + VD VE++P+L+QKG T+LALYG+GSMRDERLNRMW  KKVRFLRP E+            FF LF LHQ
Sbjct:   25 EDPDEHTLRMMLSTDNHLGYAEKDPVRGMDSFAAFEEVLYLAKQFRCDMVLIAGDLFHDNRPSRRTLYITMEIIRRYCMGPDPVRIQIVSDQAQNFRNVS--GTVNYQDDNYSVDLPIFSIHGNHDDPTRDSHGELLAALDLLAVSNLVNYFGRQEQVDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTG---FFNLFTLHQ 245
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 5.670e-87
Identity = 136/226 (60.18%), Postives = 172/226 (76.11%), Query Frame = 1 
Query:    1 EAPDADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            E  D D   IMVATD+HLGY ++D VRG DSFAAFEE+L LA  R ADF+LL GDLFH+NKPS+RTL++TM +LRR+++ D  V F+++S+Q  N + S     VNYEDP+ SVGLPIFSIHGNHDDPT +GG+EA AALDLL VA ++NYFG  +  D VEV+P+L++KG T++ALYGLG+MRDERLNRMW QK+VRFLRP++             +F +FVLHQ
Sbjct:    4 EEEDDDVFTIMVATDSHLGYCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT-----------YFSIFVLHQ 213
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA)

HSP 1 Score: 276 bits (707), Expect = 1.270e-86
Identity = 134/221 (60.63%), Postives = 170/221 (76.92%), Query Frame = 1 
Query:   16 DTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEXXXXXXXXXXKHFFKLFVLHQ 678
            D   IMVATD+HLGY ++D VRG DSFAAFEE+L LA  R ADF+LL GDLFH+NKPS+RTL++TM +LRR+++ D  V F+++S+Q  N + S     VNYEDP+ SVGLPIFSIHGNHDDPT +GG+EA AALDLL VA ++NYFG  +  D VEV+P+L++KG T++ALYGLG+MRDERLNRMW QK+VRFLRP++             +F +FVLHQ
Sbjct:   76 DVFTIMVATDSHLGYCDRDAVRGTDSFAAFEEVLRLANDRGADFLLLAGDLFHDNKPSRRTLFKTMSLLRRYALSDAAVGFEVLSDQEANFRQS-----VNYEDPHVSVGLPIFSIHGNHDDPTREGGVEALAALDLLSVANMLNYFGRQEHADRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT-----------YFSIFVLHQ 280
[Close]
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.120e-86
Identity = 135/199 (67.84%), Postives = 160/199 (80.40%), Query Frame = 1 
Query:   10 DADTLRIMVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHENKPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDPYFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDDVEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRP 606
            D DTLRIMV+TDNHLGY E+DP+RG DSFAAFEE+L LAK+ K D +LL GDLFH+NKPS+RTL++TMEI+RR+ MG +PV FQI+S+Q  N +       VNYED ++S+ LPIFSIHGNHDDPT DGG E  AALDLL V  LVNYFG  D VD VEV P+L++KG TK+A+YG+GSMRDERLNRMW  KKVRFL P
Sbjct:   31 DEDTLRIMVSTDNHLGYAERDPIRGLDSFAAFEEVLALAKRHKCDMLLLAGDLFHDNKPSRRTLHKTMEIIRRYCMGPQPVQFQIVSDQAENFRGPTN--TVNYEDEHYSIDLPIFSIHGNHDDPTRDGGTEMLAALDLLAVTNLVNYFGRQDEVDKVEVAPVLIKKGSTKVAIYGMGSMRDERLNRMWQGKKVRFLEP 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13494.2466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UFV9_9STRA5.510e-9265.47Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C3H0_THAPS6.740e-9160.99Mre11_DNA_bind domain-containing protein (Fragment... [more]
A0A7S1ZX37_TRICV1.080e-9066.17Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B7G2N6_PHATC5.630e-9062.83Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A6H5JH84_9PHAE1.050e-8977.25Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
W7UA87_9STRA2.590e-8960.34Meiotic recombination 11 n=1 Tax=Nannochloropsis g... [more]
B7G2N5_PHATC1.720e-8762.83Double-strand break repair protein n=2 Tax=Phaeoda... [more]
A0A8J2X2L8_9STRA5.670e-8760.18Double-strand break repair protein n=1 Tax=Pelagom... [more]
A0A7S3ZYR3_9STRA1.270e-8660.63Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S4MXX5_9STRA2.120e-8667.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13494contigH-elongata_contig13494:640..8179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue4.8e-90
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size678
Cds size648
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.8812048-UTR-H-elongata_contig13494:639..6691622929800.8812048-UTR-H-elongata_contig13494:639..669Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13494 640..669 +
1691679162.5247426-UTR-H-elongata_contig13494:639..6691691679162.5247426-UTR-H-elongata_contig13494:639..669Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13494 640..669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.904343-CDS-H-elongata_contig13494:669..6951622929800.904343-CDS-H-elongata_contig13494:669..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 670..695 +
1691679162.5362482-CDS-H-elongata_contig13494:669..6951691679162.5362482-CDS-H-elongata_contig13494:669..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 670..695 +
1622929800.919948-CDS-H-elongata_contig13494:1073..11551622929800.919948-CDS-H-elongata_contig13494:1073..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 1074..1155 +
1691679162.5453455-CDS-H-elongata_contig13494:1073..11551691679162.5453455-CDS-H-elongata_contig13494:1073..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 1074..1155 +
1622929800.934252-CDS-H-elongata_contig13494:1403..15611622929800.934252-CDS-H-elongata_contig13494:1403..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 1404..1561 +
1691679162.5552046-CDS-H-elongata_contig13494:1403..15611691679162.5552046-CDS-H-elongata_contig13494:1403..1561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 1404..1561 +
1622929800.9586313-CDS-H-elongata_contig13494:2043..22181622929800.9586313-CDS-H-elongata_contig13494:2043..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 2044..2218 +
1691679162.5649838-CDS-H-elongata_contig13494:2043..22181691679162.5649838-CDS-H-elongata_contig13494:2043..2218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 2044..2218 +
1622929800.9727323-CDS-H-elongata_contig13494:4689..48061622929800.9727323-CDS-H-elongata_contig13494:4689..4806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 4690..4806 +
1691679162.5744944-CDS-H-elongata_contig13494:4689..48061691679162.5744944-CDS-H-elongata_contig13494:4689..4806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 4690..4806 +
1622929800.9887135-CDS-H-elongata_contig13494:8089..81791622929800.9887135-CDS-H-elongata_contig13494:8089..8179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 8090..8179 +
1691679162.5845153-CDS-H-elongata_contig13494:8089..81791691679162.5845153-CDS-H-elongata_contig13494:8089..8179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13494 8090..8179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13494.2466.1prot_H-elongata_contig13494.2466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13494 670..8179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13494.2466.1

>prot_H-elongata_contig13494.2466.1 ID=prot_H-elongata_contig13494.2466.1|Name=mRNA_H-elongata_contig13494.2466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
MVATDNHLGYMEQDPVRGQDSFAAFEEILLLAKQRKADFVLLGGDLFHEN
KPSKRTLYRTMEILRRHSMGDKPVSFQIISEQVHNSKSSKQFGLVNYEDP
YFSVGLPIFSIHGNHDDPTWDGGMEAFAALDLLHVAKLVNYFGNSDMVDD
VEVNPILMQKGETKLALYGLGSMRDERLNRMWHQKKVRFLRPKEEDDSTD
DENKKKHFFKLFVLHQ
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mRNA from alignment at H-elongata_contig13494:640..8179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13494.2466.1 ID=mRNA_H-elongata_contig13494.2466.1|Name=mRNA_H-elongata_contig13494.2466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7540bp|location=Sequence derived from alignment at H-elongata_contig13494:640..8179+ (Himanthalia elongata Himel1 dioecious)
GAAGCGCCCGATGCTGACACGTTACGCATCATGGTGGCCACGGACAATCA
TCTAGGGTGAGAGAGCGCGCGACCGAGCTGCGACACTGGAGCTCCGGCAC
TGATTGTTGTGCTCTAGAATGTAGCCGGCGAAGCTCACCCCGGCTTAAGT
TCTCGCACTGCCGTTCCGAGGAGCTCCTAGGGTGAAGCGTCGGTCTGTCA
AAATTATTCTTTGCTTTCTTTTTCAAGCCTTAAAAAAAAACGGGCGAAAT
TTGGAGTGTGCCGTCGAAAGAGCTGCTAGCGACTCGGTGCTGACCCAGGA
CGTTATTAAGTGTGATACACTATTTTGTCGCTCTCGATGCCTTTATAATG
TATACTGTTGGTGTACCTCACCGGTGTGGGGGTGTACCTTTTTGTTTCGG
GGGTGGGGGCGCGCATTTCGTTCGCGGGGAAAAGGTACATGGAGCAAGAT
CCTGTAAGGGGCCAGGATTCTTTCGCTGCCTTTGAAGAGATCCTCCTCCT
GGCGAAGCAAAGAAAGGTGGGCGATCCCAGAAGTACGTCCCGTTGATAAT
ATACTGGAAACCCCCATCAAACCGTTTCCGCTTTCGTGAAATCTATGGCA
ATGAAATGTTTTCGTTCCTAGCAACCCTCTCTTCCCCCCTCTTCCCCCCT
TTCATAGTCTCCCGCGAAGTAGCAAGCCAAAATAATCTACATTTACTCTA
TTAAACGCTTTTAATAATGAATGAGTTTCATGGTGGTTTTCCATGCCTGG
GGAAATCATCACAGGCGGATTTCGTGCTCCTTGGAGGGGACCTGTTCCAC
GAGAACAAGCCATCGAAGCGCACGCTGTACCGGACCATGGAAATCCTGCG
TCGCCATTCCATGGGAGACAAGCCCGTAAGCTTTCAGATCATCAGCGAGC
AAGTGCACAACTCCAAAAGCAGGTTAAGATGTGAATGCGCGAGAGGCGTT
GCGCGTGATTCAAGCGCGCGTGATTTAGTCAAAATTGCTCCCGTGTTGGC
CTCGCGAGGCTGGTTGGTCAATGTTGCGGGATTGGTTGGTTGAAATAGTG
GTATAAAGCGGTCGAGATTGTTGGAGTTAGGGTTCGAGATAGCGTGATCG
GCTGACCGCATGATGCATTTGGACGCGAGATTGCGTGATTTACCGAGACT
AGTTGACCGTGTGATGCGACTGGATTTGAGATCATGTGATAGGTGGAGAT
CGCATAGATCGCAATGGTCATGACAATGGTCTCTCGATGTTCACGACTAG
TAAGAACATATGAAAATCGCGTAATAAACATATCCGTCGATGCACGCGCG
CACGCGTGCACACGTGTACGTCCCTCTCACATGTATATTCAACCGTAACA
TGCACACTGACTGGTAAAAACGGCAACATGCTGCTTCCCCCCATCTCCCT
TTAGCAAACAATTTGGGCTCGTCAACTACGAGGACCCCTACTTTTCTGTG
GGGCTGCCAATCTTCAGCATCCACGGAAATCACGACGACCCCACCTGGGA
CGGCGGGATGGAGGCTTTCGCAGCTCTCGACCTGCTACACGTGGCCAAGT
TGGTAAACTACTTCGGAAACAGCGACATGGTGAGGTGTGGGGAAGGTGCT
TACGTGGAGAACAAACTTTTTCAGACTACGTAGAGAAAATATCAGGGTAC
TGAAATAGGTGGGTTTACATATATATATATATATACGAAGTATATACGGA
TATAGAATATATGAAATCCCGGGAGACTCACCCGGGTGTGAAGAATCTTT
GATTGCGGCGAATCACGCACCGATATACTGTAGTCTAGTGTTCTCTCTCG
CCCCCTCACACTAAAAACTGTAGTAGTCTAGTATCCATCCGGCAGATGGC
TCCATGGGCAGAAATAGGGAACGGGAGGGGGCTTTGAGATCGTGTCCCGG
TTCTTAACCGCTGCCGTTGGTATCACGCACGAAGTCTGGGTGATAATTAG
GTCGAGCAAGCGCGGTACTTGGTGCGCAAACTCATATATATATATATATT
ATATATATTGGATATTGCGGAGGAATGTAGGGAAAACGCAGTTATATAAA
ACAAACACAACAGTTTGGCGTCCCCACATGATGAGTATGTAGGAAGCGTA
CGGGATAATGAGGGTATCCCCAACATTACACCGTTGACCCGATTAATTTA
CTATTGGGGGACACGATTAATCACATGTTGTGCCGATTTTATGCTCAAAG
GTAGTAATATCCACATACATTTGAACCTGACGATGGCTGGTCCCCTTGAT
TACACCTACCTCGCATGGTGCTAGGATGGTAGGTGTGGATGTTCGGAGGG
TTGGAATGAGTTAAAAAAAAAAAAAAAAAAAAATTGCATGTTTTATTTGC
TTGCCTGCCTGTACCTGGATATCTATTATCTATTAATAGTGTCTCTATCT
GCGTCAAGTGTCTGTGTTCGTAGAGGAGTGGAGGGGAAAATTAATGTAAA
CTGTGGTCACACAGGCGAAGAAACGTCGAACGCCATAATAGAATGATCGC
GATCGTTCAAGGTACCATCATTCCATTATTATTCCCTATTTTGTTGAGCT
ACTATGTATACTATATTGTACTACACTGTCATATTAATATGATACTATTA
TGCTATCCTGTACTATACTGTACTGTACTATACTATACTATATAAAACTT
TACCTTGCAATATCCTAATATACTACCAGATATACCTTACTATACGATAT
GATATGAATGTAGCCTCACTTCAAAGCATGATTCACCCGCGAACTGTGCT
TGCCCCCGGGATGATGCATTTATATGCGACGAAAGAGAGATGCGTGAGGT
GGGGGGGGCGGGGGCAGCCTAATGAATCTTCCCCGGAATTCAGGGTGAGG
GTGGCGTGGGGGCGTACTTAATTTCTGCATCCCTTTGGCTAGTAGTTAGT
GTCCTCGGCAGGATGGAAAATGATGTGGGAAGGAGATGGTATCAAATGAA
CCTCTTCCCATACCTGGTCGCTCCTAGCTCCTATTATTATTACACAGCTC
CTATTATTATTACACCCCGAACGCATCAATTTCATCTCACGGGTGGGTGT
ATTTTTCCAATTTCTGAACCCTAGAGGGCCTTCGTTTTGATTCCGTCAAC
CAACTCCCGTCATCATGAACTCCGAAAAATATTCAAGTCAGCCCCCCACA
TCGATCGTTGGATCGCTTCCTACAACGATTGTCGGTAACCGGAACGACGA
TAATAATAGTTCATTTTGTTGTAAGGCTTGTCCTTGTCCTAGCCCTACCT
ATTAAGATGTTTAGATCTCGAGGGGGGAAAAAGAAACGAAACGAAAAGCT
GATGCACGTCACAAAACGCGTATCGACGCTAGCGATAGATGAAACCGTTT
AATGACGAGGAGAGTGCTGAACTTACTGCATATGGCACTATAGAGAGGAA
AGGGAGAGAGAGGAGGCGAGAGAGAGATGTCCTGTACAGCATCAATATGA
CTTGCAGATGGCACGGCAGCGCAGGGCAGGACAGGAGAGCTTTTTGTGAT
ATATATATATATATATATATACATATATAAGATGTGGAATTGGTAATAAT
AACATATATATATATATACACATAACCTTGGATGGCCTTAGCCATTGTCA
GCAGAAAGTGGAACCAAGCTAAATAAAACTAGATAATAGTGGAATGTACT
GCACTCTACTGTAGTACTGTAATACACTCGAATCAAACGATAGTTGGTCT
CTTGAGCTTCTTTATCGGAGCTGGTGTAAAGAAGGCGGTGGGGATTTTCG
GAGGGTTTCGAAGGAAGTAATATTGTTTTAAATAAGAAATGAAAAAAAAA
CTAATGCTTCCCTTGTTTTTTCATTATTATTTCCCCTGCTCGAAAAAAAT
AACGCTTCGTCGAACCTCCCATCTCTTCTCTCCTCTCCTCCCCCTCTTTA
CCCGAATTTCGAGAGACAATGGAAAATTCTAGACTTCGTGCAATATATGA
TAAAATGTATGTACATTCTAAATGTTTCTTGTTTTATAGTTATTATGCTA
TTATTTGAAGAGCCACACAACAATCAGCTCCGCTGTCGGTTCCTCGAAAG
GTGGACGACGTGGAGGTGAACCCCATCCTGATGCAGAAAGGAGAAACGAA
GCTTGCACTGTACGGTCTGGGAAGCATGAGGGATGAGAGGCTCAATCGGA
TGTGGCACCAGAAGAAGGTTCGTTCTGCCCTTGCCTGGCCTCCGTTCGCT
TGTTGTGGTTGTGGTTGTTGAGAGATAGGGGCGAGGGGAGGGGAAAAAAA
CAAGTGGCTTACAGAGCTATCATCGCATGACTTGATCATACTATTCGACA
TCGTGAGCCAAGAGAAGACGGGGCAGGGGGTAATGACGCGAGGAAGGAAG
CGGGAAGGGCACGATGTAAGCTCACGCACACAACCAAACACACACCACAT
GATGACCAATGTGAGTAGCATAATAGAACGATTGCCACGACATGAGCGGA
TTGCACGATTATTTATTGATGCGCAATTCAATAAATGCATGCTACATTCT
CACACATCACACGCGCACGTATGTGCGATCATCTCCTGAAATTATTCTTA
TGCGTGAGGACAAAATCATTTCTTTATTTCAATACCTGCTTGTCTCGCGT
TTCGCCACCTGTGCTCTTTTGGACTGGCGCTAAAAACTGTGGGGGCTGGC
TCTAGGCTTTACTCTTCTTCTCTACTTTGGGACTGCTTTTTATTCATTTC
GCTTGTTTTTGTTTTTGTTTATTTATTGTTATTCTTATTTTCAGTGCTCC
TCTCGGTGAAATTACGACGGTAAAATTCCGCGGTGTTACCGTGAGAAATA
GGAATTTACTAACCCCATCTTCACCGTTACCAAAAAGTTGCACCATCCCG
TTCCCATTTAAATCGAAATATATATTTTCCGTTCCCATCCAAAATGTTAC
AACACAACTATTGAAATTTCTGCCATATCTCGATACCATGGTAAATGTTA
CCGCGAAAATATCACCTACCAATACACGCCCTTTAATGAACTTTCAGTAT
TATGCAATACATTTCTTGGTAGGGCAGTAGATTAGTTTACAGTTGTCAAT
GAACAAAGTCCTTCAATTACCGCCAAGTTTTTTTCTTATATTTTGTTCTT
TTTCTCTTTTGCTCTTTTCTCTAATATTAATATATATATATTATATATAT
TGTGCCGGTGGTTTACAACAGCCCACAAACGCACACAACACGCCCGGGGG
CGGGCAGTCATGGAAGGTGGTGACAATGTTGGTGGTGCCCACAATGACGT
GGGTGAGGGAGCGTCATCAGGTGCCGCCGTGGATCCTTCCGTATCGAGTG
ATGGTGCTGCAGCTGTAGATGCAGCCACCGCCGGTGGTAGTGTTGGTGGT
GTAGTTGACATCAGCAGTCCCGTGGTGGAGGTTGGTAATGGTTTGAAGGC
CACAATGCAGACCGTTCACTCCAAGAATGGCACACCGGTCACGGTGAAGT
TTGTCAAGAATGGCCAGGGTCCCCGTTGAGTGCATTTCCGCGCTTCTAGA
TCTGCGCCGCAAAGACTTCTCCGCAGATCATCTCTTCAACGGTAACGCAC
ATCTGAAAACCTCTGCCATCAGTGGCGTGAAGAACGTTGCCAAGACCTTT
GTGGAGCCGGCTTCCTCAGGCACTGGGGTGGGAACGGTGGGGTCAGTGGT
GGCGACGGATCCACTCCGCACGAACCCAAGAAGCACAAGGGTTCATCAGA
CTTAGAAAAAGGCCACTCAAGCACTTCGCCATGTCGAAAGCATATAACGC
CAACAGTTCTTCACCGCCGGTGACTACAGTAAGGCGGCCAACAACCATTG
AAAAGGAGCTGCGAGTGTACTTCGCGGAAAATAGTCATCTCGAGGAGAAC
GACTTCTTGCTCCTCCAGTTCAGACAGCGTATGGGGAAGGTCAGTACCTG
CACCGAGACGGGTAAAGTCAAAACATGACTGCCATATTTGGCGCTCATTG
CTCTGCTTTACAACGGAATTGAGTTTACCAGCTGCAAGATGGAAATGAAC
GTTTTAGCCTTTCCTTTCTTAACGGCAGCCTACGAAGCTGGATTTCACCC
GGGAAGGTGGAGCGGCTGATGTTCCTTCGGCTCGGCAGGTTCTTCATCCC
GGAGGTCAAGGCTCTCCACGACGCCGTCGAAGCCAACAAAGCAGCGGCAG
CACGGTGCAAAGAGAATGTTTCGCAAGTTCACTGGGCAATGTCGAATACG
GTTCTTGCCTTAAGCCTATAAATCTTCAGTTTTGTGTTGTATGAATGAAT
TGAACTGTTGTTTTGTAGAAGTTGCTTTGGGCTTGTACCCATGTGACAAT
ATTATACTGTACAAAACCGTAGCTTGTAAGGGGAGGCAAGTTCTTTAATG
ACTTTGGTCTGGGGATGAAGCTGCTGACATCGGGGGCGTAGCTCTTACTT
GTGATCGTTGCCGGTTGGCTGCGAATGTCTAACTGTGATCTGGACACTGC
CTTGTATTGTATTCTCCGAAGTATTTCATATTTAAGCTCGAGGCCTGGTG
ATTTTCGTGTTTTGTGAACGTACTGGCATCGCAAAACAACAAGCACGCGG
GAAAAACGCAAAACAATATAAAATATAAAATATACCAGTATCTGGTACCA
GGGTGTCTGAATACCACAGTAAAAGGTACCAGGGTGTCCAATTACCATCC
AAAAATACCGTGCATTACCGTGGTGGCTGAATACCACAGTAAAATGTACC
AGGGTGTCCGATTACCATCCAAAAAACAACCGTGCATTACCGTGGGGGCT
GAGTACCACGGTAGCATGTACCAAAGTGGCCGATTATCATCCAACAAATA
CCGTGCATTACCGCGGGGGCTGGATACCACGGTAGCATGTACCAGAGTGG
ACGATTACCACCCAAACAATACCGTGTATTACCGTGGGAGCTGAGTATCA
CGGTAGCATGTACCAGAGTGGCCGATTATCATCCAAACAATACCGTTCAT
TACCGTGGGGGCTGAGTACCACGATGGCATGTACCAGAATGGCCGATTAC
TATCCAAAAAATGCCGTTCATTATAGTGGGGGCTGAGTATCACGGTAGCA
TATACCTGAGTGACCGATTACCATCCAAAAAGTACCGTGCATAACCGTGG
TGGCTGAATACCGGGGTAGATGTTACCAATATCCAAGCTCGTTACCGAGA
GGAGCCCTGTATTTTCTTTTTCTTTGTTGCCGGGTCTTTTCTGTGGGAAC
AAGCAAAATATAATTGCCACTTTCCAAAATAATCTGTTTATAGTATAGGG
GAGGAAAATGCAATATGATTACAGCATTGCGCTATTTATTATCCGTATTA
TTGTATTATTCCACCCTTCTCTCTGCGGTGGTACCAATCTTCGCTTTTCT
TCACCGCGTTAATTTTCATACATCTTCCCTTCGCTCTCTGTTCGTGCCCC
CCTTCCCCCCCCCCTCAACCTCCCCCCATGCTTCCGTTTTCGGCCTGAAG
GTTCGATTCCTCCGACCCAAAGAAGAGGACGACAGCACCGACGACGAAAA
TAAGAAGAAGCATTTCTTCAAACTTTTCGTTCTCCACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig13494:640..8179+

>mRNA_H-elongata_contig13494.2466.1 ID=mRNA_H-elongata_contig13494.2466.1|Name=mRNA_H-elongata_contig13494.2466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig13494:640..8179+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCCACGGACAATCATCTAGGATGGTGGCCACGGACAATCATCTA
GGGTACATGGAGCAAGATCCTGTAAGGGGCCAGGATTCTTTCGCTGCCTT
TGAAGAGATCCTCCTCCTGGCGAAGCAAAGAAAGGTACATGGAGCAAGAT
CCTGTAAGGGGCCAGGATTCTTTCGCTGCCTTTGAAGAGATCCTCCTCCT
GGCGAAGCAAAGAAAGGCGGATTTCGTGCTCCTTGGAGGGGACCTGTTCC
ACGAGAACAAGCCATCGAAGCGCACGCTGTACCGGACCATGGAAATCCTG
CGTCGCCATTCCATGGGAGACAAGCCCGTAAGCTTTCAGATCATCAGCGA
GCAAGTGCACAACTCCAAAAGCAGGCGGATTTCGTGCTCCTTGGAGGGGA
CCTGTTCCACGAGAACAAGCCATCGAAGCGCACGCTGTACCGGACCATGG
AAATCCTGCGTCGCCATTCCATGGGAGACAAGCCCGTAAGCTTTCAGATC
ATCAGCGAGCAAGTGCACAACTCCAAAAGCAGCAAACAATTTGGGCTCGT
CAACTACGAGGACCCCTACTTTTCTGTGGGGCTGCCAATCTTCAGCATCC
ACGGAAATCACGACGACCCCACCTGGGACGGCGGGATGGAGGCTTTCGCA
GCTCTCGACCTGCTACACGTGGCCAAGTTGGTAAACTACTTCGGAAACAG
CGACATGCAAACAATTTGGGCTCGTCAACTACGAGGACCCCTACTTTTCT
GTGGGGCTGCCAATCTTCAGCATCCACGGAAATCACGACGACCCCACCTG
GGACGGCGGGATGGAGGCTTTCGCAGCTCTCGACCTGCTACACGTGGCCA
AGTTGGTAAACTACTTCGGAAACAGCGACATGGTGGACGACGTGGAGGTG
AACCCCATCCTGATGCAGAAAGGAGAAACGAAGCTTGCACTGTACGGTCT
GGGAAGCATGAGGGATGAGAGGCTCAATCGGATGTGGCACCAGAAGAAGG
TGGACGACGTGGAGGTGAACCCCATCCTGATGCAGAAAGGAGAAACGAAG
CTTGCACTGTACGGTCTGGGAAGCATGAGGGATGAGAGGCTCAATCGGAT
GTGGCACCAGAAGAAGGTTCGATTCCTCCGACCCAAAGAAGAGGACGACA
GCACCGACGACGAAAATAAGAAGAAGCATTTCTTCAAACTTTTCGTTCTC
CACCAGGTTCGATTCCTCCGACCCAAAGAAGAGGACGACAGCACCGACGA
CGAAAATAAGAAGAAGCATTTCTTCAAACTTTTCGTTCTCCACCAG
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