mRNA_H-elongata_contig134865.2464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig134865.2464.1
Unique Name	mRNA_H-elongata_contig134865.2464.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.840e-25
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGATPFQLMTGRVP 303
            G PEV+VSD A HFKN  +  +   LG   RF VA S  SNGT ERM  EV+RT +AV+ ER   L +W D + AVQ+ALN+AYRER  +TP+ +M GR P
Sbjct:  104 GVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 204

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.590e-24
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGATPFQLMTGRVP 303
            G PEV+VSD A HFKN  +  +   LG   RF VA S  SNGT ERM  E++RT +AV+ ER   + +W D + AVQ+ALN+AYRER  +TP+ +M GR P
Sbjct:  551 GVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 651

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.700e-24
Identity = 52/101 (51.49%), Postives = 67/101 (66.34%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGATPFQLMTGRVP 303
            G PEV+VSD A HFKN  +  +   LG   RF VA S  SNGT ERM  E++RT +AV+ ER   + +W D + AVQ+ALN+AYRER  +TP+ +M GR P
Sbjct: 1327 GVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAP 1427

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.540e-22
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGATPFQLMTGRVP 303
            G PEV+VSD A HFKN  +  +   LG    F VA S  SNGT ERM  EV+RT +A++ E      +W D + AVQ+ALN+A+RER G+TP+ +M GR P
Sbjct: 1429 GVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAP 1529

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6A3HSR4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HSR4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.910e-13
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGA-TPFQLMT 291
            G    ++SD   HFKN+ ++ ++  LGA+H F  AY+  +NGTVE +N EV+++ +A++SER   + +W   +  VQ ALN+   +R+G  TP    T
Sbjct:   47 GVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 144

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6A4B270_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B270_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.010e-13
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMG-ATPFQLMTG 294
            G+  VFV     HFKN+ +  + + LGA H F +AY+  +NGTVE +N EV+++ +A++SER    + W   +  VQ ALNS   +R+G ATP     G
Sbjct:  219 GSKYVFVLKDGAHFKNQVIARLQSALGAHHHFTLAYTPWANGTVEVVNREVLKSVKALLSERKLQATYWPRVLSVVQAALNSMPSDRLGGATPLTAFYG 317

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGA-TPFQLMT 291
            G    ++SD   HFKN+ ++ ++  LGA+H F  AY+  +NGTVE +N EV+++ +A++SER   + +W   +  VQ ALN+   +R+G  TP    T
Sbjct:  234 GVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 331

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6A3W606_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3W606_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.310e-13
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGA-TPFQLMT 291
            G    ++SD   HFKN+ ++ ++  LGA+H F  AY+  +NGTVE +N EV+++ +A++SER   + +W   +  VQ ALN+   +R+G  TP    T
Sbjct:  517 GVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFT 614

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-13
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1

Query:    1 GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGAT-PFQLMTGRVP 303
            G PEV++SDG  HFKN  +K +A +L   H  ++AY    NGTVER+N +++   R +++E     +EW   +  VQ  LN    E +G T P    TG  P
Sbjct: 1087 GVPEVWISDGGSHFKNNIMKALAHRLKVQHNIVLAYCPWRNGTVERVNRDILAVMRVMLAESRLAETEWDYLLPVVQANLNQTPTESLGGTSPMFAYTGLDP 1188

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BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Match: A0A6A3HM09_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HM09_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.760e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1

Query:   16 FVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLEVIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMG-ATPFQLMT 291
            +VSD   HFKN+ +  + + LGA H F +AY+  +NGTVE +N EV+++ +A++SER    + W   +  VQ ALNS   +R+G ATP    T
Sbjct:    1 WVSDQGAHFKNQVIARLQSALGAHHHFTLAYTPWANGTVEVVNREVLKSVKALLSERKLQATYWPRVLSVVQAALNSMPSDRLGGATPLTAFT 93

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot

BLAST of mRNA_H-elongata_contig134865.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JVS6_9PHAE	2.840e-25	53.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCX8_9PHAE	2.590e-24	51.49	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L7F6_9PHAE	2.700e-24	51.49	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5A5_9PHAE	1.540e-22	49.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6A3HSR4_9STRA	1.910e-13	37.76	Uncharacterized protein n=2 Tax=Phytophthora fraga...	[more]
A0A6A4B270_9STRA	2.010e-13	40.40	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6G0RX23_9STRA	2.240e-13	37.76	Uncharacterized protein n=1 Tax=Phytophthora fraga...	[more]
A0A6A3W606_9STRA	2.310e-13	37.76	Uncharacterized protein n=2 Tax=Phytophthora fraga...	[more]
A0A6A4YXI7_9STRA	2.360e-13	38.24	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A6A3HM09_9STRA	2.760e-13	41.94	Integrase catalytic domain-containing protein (Fra...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig134865	contig	H-elongata_contig134865:197..499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	69.7
Seed ortholog evalue	8.8e-10
Seed eggNOG ortholog	164328.Phyra85588
EggNOG free text desc.	transposition, RNA-mediated
EggNOG OGs	3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	303
Cds size	303
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929800.717051-CDS-H-elongata_contig134865:196..499	1622929800.717051-CDS-H-elongata_contig134865:196..499	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134865 197..499 +
1691679162.4891613-CDS-H-elongata_contig134865:196..499	1691679162.4891613-CDS-H-elongata_contig134865:196..499	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134865 197..499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig134865.2464.1	prot_H-elongata_contig134865.2464.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig134865 197..499 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig134865:197..499+
coding sequence from alignment at H-elongata_contig134865:197..499+

protein sequence of mRNA_H-elongata_contig134865.2464.1

>prot_H-elongata_contig134865.2464.1 ID=prot_H-elongata_contig134865.2464.1|Name=mRNA_H-elongata_contig134865.2464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GTPEVFVSDGAPHFKNETLKFVAAKLGASHRFLVAYSSRSNGTVERMNLE
VIRTFRAVMSERGSPLSEWSDTIFAVQFALNSAYRERMGATPFQLMTGRV
P

mRNA from alignment at H-elongata_contig134865:197..499+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig134865.2464.1 ID=mRNA_H-elongata_contig134865.2464.1|Name=mRNA_H-elongata_contig134865.2464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig134865:197..499+ (Himanthalia elongata Himel1 dioecious)
GGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAATGA
GACGCTGAAGTTTGTTGCTGCGAAACTGGGAGCCTCACATCGGTTTTTGG
TGGCATACTCATCGCGGAGCAATGGTACTGTGGAGCGAATGAACTTGGAG
GTGATTCGGACGTTTCGAGCGGTTATGAGTGAAAGGGGGAGCCCGCTTTC
GGAATGGTCCGACACCATCTTTGCGGTGCAGTTTGCGCTAAACTCAGCCT
ACCGGGAGCGGATGGGCGCTACTCCGTTTCAGTTAATGACTGGGCGAGTG
CCG

Coding sequence (CDS) from alignment at H-elongata_contig134865:197..499+

>mRNA_H-elongata_contig134865.2464.1 ID=mRNA_H-elongata_contig134865.2464.1|Name=mRNA_H-elongata_contig134865.2464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig134865:197..499+ (Himanthalia elongata Himel1 dioecious)
GGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAATGA
GACGCTGAAGTTTGTTGCTGCGAAACTGGGAGCCTCACATCGGTTTTTGG
TGGCATACTCATCGCGGAGCAATGGTACTGTGGAGCGAATGAACTTGGAG
GTGATTCGGACGTTTCGAGCGGTTATGAGTGAAAGGGGGAGCCCGCTTTC
GGAATGGTCCGACACCATCTTTGCGGTGCAGTTTGCGCTAAACTCAGCCT
ACCGGGAGCGGATGGGCGCTACTCCGTTTCAGTTAATGACTGGGCGAGTG
CCGGGCACTCCCGAGGTGTTCGTGAGCGATGGAGCACCGCACTTTAAAAA
TGAGACGCTGAAGTTTGTTGCTGCGAAACTGGGAGCCTCACATCGGTTTT
TGGTGGCATACTCATCGCGGAGCAATGGTACTGTGGAGCGAATGAACTTG
GAGGTGATTCGGACGTTTCGAGCGGTTATGAGTGAAAGGGGGAGCCCGCT
TTCGGAATGGTCCGACACCATCTTTGCGGTGCAGTTTGCGCTAAACTCAG
CCTACCGGGAGCGGATGGGCGCTACTCCGTTTCAGTTAATGACTGGGCGA
GTGCCG