mRNA_H-elongata_contig134824.2462.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134824.2462.1
Unique NamemRNA_H-elongata_contig134824.2462.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134824.2462.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 2.870e-5
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 QEFTILRRMEALYKSIVWRGNKVSCVEPGLYCERFVDFMVERTA 132
            Q +T ++  E  YK+I    N++SCV+P LYCERF+ FM E T+
Sbjct:  455 QVYTNMKHAETWYKAIGKAKNELSCVDPVLYCERFIGFMEESTS 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134824.2462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMY7_9PHAE2.870e-547.73PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134824contigH-elongata_contig134824:1379..1513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size111
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.58009-UTR-H-elongata_contig134824:1378..14021622929800.58009-UTR-H-elongata_contig134824:1378..1402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134824 1379..1402 +
1691679162.4456072-UTR-H-elongata_contig134824:1378..14021691679162.4456072-UTR-H-elongata_contig134824:1378..1402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134824 1379..1402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.5935702-CDS-H-elongata_contig134824:1402..15131622929800.5935702-CDS-H-elongata_contig134824:1402..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134824 1403..1513 +
1691679162.4567864-CDS-H-elongata_contig134824:1402..15131691679162.4567864-CDS-H-elongata_contig134824:1402..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134824 1403..1513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134824.2462.1prot_H-elongata_contig134824.2462.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134824 1403..1513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134824.2462.1

>prot_H-elongata_contig134824.2462.1 ID=prot_H-elongata_contig134824.2462.1|Name=mRNA_H-elongata_contig134824.2462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MEALYKSIVWRGNKVSCVEPGLYCERFVDFMVERTA*
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mRNA from alignment at H-elongata_contig134824:1379..1513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134824.2462.1 ID=mRNA_H-elongata_contig134824.2462.1|Name=mRNA_H-elongata_contig134824.2462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig134824:1379..1513+ (Himanthalia elongata Himel1 dioecious)
CAGGAGTTCACCATTTTGAGGCGAATGGAGGCCCTGTACAAGTCCATCGT
GTGGCGTGGCAACAAAGTCAGCTGCGTCGAGCCCGGCCTGTACTGCGAGC
GTTTCGTGGACTTCATGGTGGAGCGCACGGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig134824:1379..1513+

>mRNA_H-elongata_contig134824.2462.1 ID=mRNA_H-elongata_contig134824.2462.1|Name=mRNA_H-elongata_contig134824.2462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig134824:1379..1513+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGCCCTGTACAAGTCCATCGTGTGGCGTGGCAACAAAGTCAGCTG
CGTCGAGCCCGGCCTGTACTGCGAGCGTTTCGTGGACTTCATGGTGGAGC
GCACGGCTTGAATGGAGGCCCTGTACAAGTCCATCGTGTGGCGTGGCAAC
AAAGTCAGCTGCGTCGAGCCCGGCCTGTACTGCGAGCGTTTCGTGGACTT
CATGGTGGAGCGCACGGCTTGA
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