mRNA_H-elongata_contig134806.2461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134806.2461.1
Unique NamemRNA_H-elongata_contig134806.2461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A6H5K7D8_9PHAE (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7D8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 8.420e-13
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 EAGRWAAGENRSCRIVFIGKRLDREFLEEGFNSTCRCAVNK 123
            EAGRW  GE+R CRIVFIGKRLDR FLEEGFNST R    K
Sbjct:  540 EAGRWGDGEDRGCRIVFIGKRLDRAFLEEGFNSTARAVAPK 580
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A7S4G9L5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G9L5_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 1.060e-6
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:   13 WAAGENRSCRIVFIGKRLDREFLEEGFNST 102
            W  GE R C+IVFIGK LDR F EEGF ST
Sbjct:   14 WGPGEERGCKIVFIGKALDRPFFEEGFLST 43
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: R1C4A2_EMIHU (CobW C-terminal domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C4A2_EMIHU)

HSP 1 Score: 48.5 bits (114), Expect = 2.500e-5
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    7 GRWAAGENRSCRIVFIGKRLDREFLEEGFNS 99
            G WA  E RSC++VFIGKRLDR F E+ F++
Sbjct:  434 GGWAVDEARSCKVVFIGKRLDRPFFEQSFDA 464
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A7S3LQG0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQG0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.420e-5
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 AGRWAAGENRSCRIVFIGKRLDREFLEEGFNS 99
            A RW+  E RSC+IVFIGK+LD E+L  GF S
Sbjct:  458 ASRWSLTEERSCKIVFIGKKLDEEWLRGGFES 489
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A7S1Q3F7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1Q3F7_ALECA)

HSP 1 Score: 46.2 bits (108), Expect = 6.280e-5
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:    1 EAGRWAAGENRSCRIVFIGKRLDREFLEEGF 93
            + G WA GE R C+++FIGK LDRE L  GF
Sbjct:  100 QEGAWAEGETRRCKMIFIGKNLDREELTSGF 130
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A836CDY8_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 6.410e-5
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 EAGRWAAGENRSCRIVFIGKRLDREFLEEGFNSTCR 108
            E G W   E+R C+IVFIG+RL++E LE+GF+   R
Sbjct:  506 EMGPWGLTEDRGCKIVFIGRRLNKEVLEKGFDECLR 541
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BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Match: A0A7S3XSH9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSH9_HETAK)

HSP 1 Score: 47.0 bits (110), Expect = 8.770e-5
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    1 EAGRWAAGENRSCRIVFIGKRLDREFLEEGF 93
            EAG W A E R C+IVFIGKRLDR + E+ F
Sbjct:  480 EAGEWRAHEARGCKIVFIGKRLDRAWYEDPF 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134806.2461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K7D8_9PHAE8.420e-1375.61CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A7S4G9L5_9EUGL1.060e-670.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R1C4A2_EMIHU2.500e-561.29CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S3LQG0_9STRA3.420e-562.50Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1Q3F7_ALECA6.280e-558.06Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A836CDY8_9STRA6.410e-552.78CobW/HypB/UreG, nucleotide-binding domain-containi... [more]
A0A7S3XSH9_HETAK8.770e-564.52Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134806contigH-elongata_contig134806:336..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7G996
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
Ec32 ortholog descriptionCobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
Ec32 orthologEc-27_002320.1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.482859-CDS-H-elongata_contig134806:335..4611622929800.482859-CDS-H-elongata_contig134806:335..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134806 336..461 -
1691679162.4315796-CDS-H-elongata_contig134806:335..4611691679162.4315796-CDS-H-elongata_contig134806:335..461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134806 336..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134806.2461.1prot_H-elongata_contig134806.2461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134806 336..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134806.2461.1

>prot_H-elongata_contig134806.2461.1 ID=prot_H-elongata_contig134806.2461.1|Name=mRNA_H-elongata_contig134806.2461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
EAGRWAAGENRSCRIVFIGKRLDREFLEEGFNSTCRCAVNK*
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mRNA from alignment at H-elongata_contig134806:336..461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134806.2461.1 ID=mRNA_H-elongata_contig134806.2461.1|Name=mRNA_H-elongata_contig134806.2461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig134806:336..461- (Himanthalia elongata Himel1 dioecious)
GAGGCGGGTCGCTGGGCCGCCGGTGAGAACCGCAGCTGCCGCATCGTGTT
CATCGGGAAGCGTCTCGACAGGGAGTTCCTAGAGGAAGGCTTCAACTCGA
CCTGTCGGTGTGCAGTAAACAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig134806:336..461-

>mRNA_H-elongata_contig134806.2461.1 ID=mRNA_H-elongata_contig134806.2461.1|Name=mRNA_H-elongata_contig134806.2461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig134806:336..461- (Himanthalia elongata Himel1 dioecious)
GAGGCGGGTCGCTGGGCCGCCGGTGAGAACCGCAGCTGCCGCATCGTGTT
CATCGGGAAGCGTCTCGACAGGGAGTTCCTAGAGGAAGGCTTCAACTCGA
CCTGTCGGTGTGCAGTAAACAAATGAGAGGCGGGTCGCTGGGCCGCCGGT
GAGAACCGCAGCTGCCGCATCGTGTTCATCGGGAAGCGTCTCGACAGGGA
GTTCCTAGAGGAAGGCTTCAACTCGACCTGTCGGTGTGCAGTAAACAAAT
GA
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