mRNA_H-elongata_contig134751.2458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134751.2458.1
Unique NamemRNA_H-elongata_contig134751.2458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: D7FR51_ECTSI (DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR51_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.050e-48
Identity = 87/107 (81.31%), Postives = 88/107 (82.24%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            RV CKDNG GMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQV            SD    P FL+KCVLDIDIYKNRPSVHEHVKLPNPE
Sbjct:  156 RVKCKDNGVGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVVSGCS-------SDVKDPPNFLTKCVLDIDIYKNRPSVHEHVKLPNPE 255
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S2S2M8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2M8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.810e-35
Identity = 65/107 (60.75%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            RV CKDNG GMPH  IP+MLG VLS SKYGVRQ RGK+G+GAKMALIW+KKSTGLPI+VR            D  + P  +S+CVLDIDI++N P V  H K  NP+
Sbjct:  151 RVTCKDNGCGMPHQAIPEMLGRVLSGSKYGVRQTRGKFGLGAKMALIWAKKSTGLPIEVRS-------AHTKDASEPPRSVSECVLDIDIHRNEPQVQRHTKQANPD 250
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A4D9CY99_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY99_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.900e-34
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPN 315
            RV C+DNG GM H+KIPDMLG VLSSSKYGVRQ RGK+G+G+KMALIWSKKSTGLPI+VR            +++    ++S CVLDIDIY+N+P V  H K+ N
Sbjct:  143 RVTCEDNGCGMAHEKIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSL-------EENHPAAYISHCVLDIDIYRNQPFVKLHEKVAN 240
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S3LRB3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LRB3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 7.330e-34
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            ++ CKDNG GM H++IPDM G VL+ SKYGV+QARGK+G+GAKMALIWSKKSTGLPI+++        +  ++ D++  F++ C+LDIDI+KN P++  H K+PN E
Sbjct:  145 KLVCKDNGCGMKHERIPDMFGRVLAGSKYGVKQARGKFGLGAKMALIWSKKSTGLPIEIKS-------SHTNNPDESSDFITHCILDIDIHKNEPNIRVHEKVPNDE 244
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: W7U7C7_9STRA (Dna topoisomerase 6 subunit b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7C7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.990e-33
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPN 315
            RV C+DNG GM H+KIPDMLG VLSSSKYGVRQ RGK+G+G+KMALIWSKKSTGLPI+VR            +++    ++S CVLDIDIY+N+P V  H K+ N
Sbjct:  143 RVTCEDNGCGMAHEKIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSL-------EENHPAAYISHCVLDIDIYRNQPFVKLHEKVAN 240
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S2TYK6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYK6_9EUKA)

HSP 1 Score: 125 bits (313), Expect = 3.030e-33
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            RV C+DNG GMPH KIP MLG+VLSS+KYGV+Q RGK+G+GAKMAL+W+KKSTG+P++V             +  Q    +S C LDIDI+KN P V  H K PNPE
Sbjct:  152 RVTCQDNGIGMPHAKIPSMLGIVLSSTKYGVKQTRGKFGLGAKMALVWAKKSTGMPVEV-------------ETAQEGKRISACRLDIDIHKNEPRVLLHEKRPNPE 245
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S4VJB8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VJB8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.610e-33
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:    4 VWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLD---PGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            +  +DNG GM HD IP++LG VLS SKYGVRQ RGK+G+GAKMALIWSKKSTG+PI+++            E  D ++    +S CVLDIDIYKNRP V EH K+PN E
Sbjct:  153 ISVRDNGCGMAHDAIPNLLGRVLSGSKYGVRQTRGKFGLGAKMALIWSKKSTGVPIKIKTSHFGASDHKRHESGDDNRFGQEISTCVLDIDIYKNRPRVIEHTKVPNKE 261
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S3XXL4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXL4_HETAK)

HSP 1 Score: 129 bits (323), Expect = 8.390e-33
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 RVWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            R+ C+DNG GM H+ IP+MLG VLS SKYGVRQ RGK+G+G+KMALIWSKK+TG+PI++            +D    P FLS  VLDIDIYKN P VH+  KL NP+
Sbjct:  249 RIVCRDNGVGMAHEAIPNMLGRVLSGSKYGVRQTRGKFGLGSKMALIWSKKTTGMPIEITSGHS-------TDPAAPPAFLSHIVLDIDIYKNEPRVHKQEKLENPD 348
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A7S2XJE4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJE4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.300e-32
Identity = 63/105 (60.00%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:    4 VWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLDPGFRFLTEISDQDQAPG-FLSKCVLDIDIYKNRPSVHEHVKLPN 315
            +  +DNG GM H+ IP++LG VLS SKYGVRQ RGK+G+GAKMALIWSKKSTG+PI +           +++    PG F+SKCVLDIDIYKNRP V EH K PN
Sbjct:  155 ITVRDNGCGMSHEAIPNLLGRVLSGSKYGVRQTRGKFGLGAKMALIWSKKSTGVPITITT-------AHMNNDQGTPGEFISKCVLDIDIYKNRPRVIEHSKQPN 252
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BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Match: A0A6V2BFB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BFB6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.600e-31
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1 
Query:    4 VWCKDNGAGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVRLD---PGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE 321
            +  +DNG GM HD IP++LG VLS SKYGVRQ RGK+G+GAKMALIWSKKSTG+PI+++            E  D ++    +S CVLDIDIYKNRP V EH K+PN E
Sbjct:  153 ISVRDNGCGMAHDAIPNLLGRVLSGSKYGVRQTRGKFGLGAKMALIWSKKSTGVPIKIKTSHFGASDHKRHESGDDNRFGQEISTCVLDIDIYKNRPRVIEHTKVPNKE 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134751.2458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR51_ECTSI1.050e-4881.31DNA topoisomerase VI subunit B-like protein Topois... [more]
A0A7S2S2M8_9STRA8.810e-3560.75Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CY99_9STRA5.900e-3460.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3LRB3_9STRA7.330e-3455.14Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
W7U7C7_9STRA1.990e-3360.95Dna topoisomerase 6 subunit b n=1 Tax=Nannochlorop... [more]
A0A7S2TYK6_9EUKA3.030e-3357.01Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4VJB8_9STRA5.610e-3357.80Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3XXL4_HETAK8.390e-3357.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XJE4_9STRA6.300e-3260.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6V2BFB6_9STRA1.600e-3157.80Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134751contigH-elongata_contig134751:352..1369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue5.7e-22
Seed eggNOG ortholog227086.JGI_V11_53298
Preferred nameTOP6B
KEGG koko:K03167
GOsGO:0000902,GO:0003674,GO:0003735,GO:0003824,GO:0003916,GO:0003918,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009330,GO:0009653,GO:0009719,GO:0009725,GO:0009741,GO:0009888,GO:0009987,GO:0010026,GO:0010033,GO:0010467,GO:0014070,GO:0015935,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0019538,GO:0022402,GO:0022613,GO:0030154,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0042023,GO:0042221,GO:0042254,GO:0042623,GO:0042802,GO:0042803,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046983,GO:0048856,GO:0048869,GO:0050896,GO:0061505,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0140097,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904
EggNOG free text desc.DNA topoisomerase II activity
EggNOG OGs2QQC0@2759,COG1389@1
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size291
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134751.2458.1prot_H-elongata_contig134751.2458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134751 382..1369 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.2367945-UTR-H-elongata_contig134751:351..3811622929800.2367945-UTR-H-elongata_contig134751:351..381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134751 352..381 +
1691679162.3310912-UTR-H-elongata_contig134751:351..3811691679162.3310912-UTR-H-elongata_contig134751:351..381Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig134751 352..381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.2638721-CDS-H-elongata_contig134751:381..3961622929800.2638721-CDS-H-elongata_contig134751:381..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 382..396 +
1691679162.3469865-CDS-H-elongata_contig134751:381..3961691679162.3469865-CDS-H-elongata_contig134751:381..396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 382..396 +
1622929800.2799814-CDS-H-elongata_contig134751:698..8651622929800.2799814-CDS-H-elongata_contig134751:698..865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 699..865 +
1691679162.3584-CDS-H-elongata_contig134751:698..8651691679162.3584-CDS-H-elongata_contig134751:698..865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 699..865 +
1622929800.294379-CDS-H-elongata_contig134751:1260..13691622929800.294379-CDS-H-elongata_contig134751:1260..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 1261..1369 +
1691679162.3686185-CDS-H-elongata_contig134751:1260..13691691679162.3686185-CDS-H-elongata_contig134751:1260..1369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134751 1261..1369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134751.2458.1

>prot_H-elongata_contig134751.2458.1 ID=prot_H-elongata_contig134751.2458.1|Name=mRNA_H-elongata_contig134751.2458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVR
LDPGFRFLTEISDQDQAPGFLSKCVLDIDIYKNRPSVHEHVKLPNPE
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mRNA from alignment at H-elongata_contig134751:352..1369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134751.2458.1 ID=mRNA_H-elongata_contig134751.2458.1|Name=mRNA_H-elongata_contig134751.2458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-elongata_contig134751:352..1369+ (Himanthalia elongata Himel1 dioecious)
CGGGTCTGGTGCAAGGACAACGGAGCTGGCATGCCGCACGATAAGGTGAC
GGCATGGCGCACGATAAGAGAATCGTCTCGTGTGACGGAAGTGTACCACT
TCTTGGCCGTTGTTTCTGGGATTGATGGTATTGCTATAATAGAGTATTGA
TGGTATTGCTATAATAGTATTGCTTGATGCAGCCGCTGGTGTACACCATG
CTGCTGCTTCATCAGAGGTCTCATTAAAGATCGGCCTCCTCAAGATGTCC
CTTGCGCCCTCCCTACCTACGGGATCGGCATTTACGATGTTGGCGTTTTT
ATCTCGCTACGCTCGGCCGCATGTCACCTGCATGATGTACGTTACAGATC
CCGGATATGCTGGGTGTAGTCCTGTCGAGTAGCAAATACGGAGTGAGGCA
AGCGCGGGGAAAGTATGGCATGGGAGCGAAGATGGCCCTAATTTGGTCGA
AGAAGAGCACGGGACTGCCGATCCAGGTACGCCTCGATCCAGGTTTTCGT
TTCCTAACAGAGATGTGTGTAACGTAGCGTGCTTGGCGCGTATTGTACTG
TATACTGTGATGTACTATTACCTACTATAATGTACTATTACCTACTATAT
TGTACTATTACCTACTATAATGTACTATTACCTACTATAATGTACTATTA
CCTACTATAATGTACTATTACCTACTATAATGTTATATATACTTAAGTGT
GACGATTTTGTGCTTAAAGGTAGTAATGTACACATTCGAATCCGACGATA
GTTGGTCCCCTGGATGGCACCTCTCACGGCGCTAAGGTGTGGATGTTCGG
AGGGTTGGAATGAGTTCAAGGTTTTTTTAATAATAATGTACTATTACCTA
CTTTAAATGTTGTCTCGTCCCTCAAACACGTTCGCGGAGAAGGTGATATC
TGGCTGCAGTTCGGACCAAGACCAAGCTCCAGGCTTTCTCAGCAAATGTG
TCCTGGACATCGACATATACAAAAATCGACCCTCAGTTCACGAACATGTT
AAATTGCCCAACCCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig134751:352..1369+

>mRNA_H-elongata_contig134751.2458.1 ID=mRNA_H-elongata_contig134751.2458.1|Name=mRNA_H-elongata_contig134751.2458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig134751:352..1369+ (Himanthalia elongata Himel1 dioecious)
ATGCCGCACGATAAGATGCCGCACGATAAGATCCCGGATATGCTGGGTGT
AGTCCTGTCGAGTAGCAAATACGGAGTGAGGCAAGCGCGGGGAAAGTATG
GCATGGGAGCGAAGATGGCCCTAATTTGGTCGAAGAAGAGCACGGGACTG
CCGATCCAGGTACGCCTCGATCCAGGTTTTCGTTTCCTAACAGAGATATC
CCGGATATGCTGGGTGTAGTCCTGTCGAGTAGCAAATACGGAGTGAGGCA
AGCGCGGGGAAAGTATGGCATGGGAGCGAAGATGGCCCTAATTTGGTCGA
AGAAGAGCACGGGACTGCCGATCCAGGTACGCCTCGATCCAGGTTTTCGT
TTCCTAACAGAGATTTCGGACCAAGACCAAGCTCCAGGCTTTCTCAGCAA
ATGTGTCCTGGACATCGACATATACAAAAATCGACCCTCAGTTCACGAAC
ATGTTAAATTGCCCAACCCGGAGTTCGGACCAAGACCAAGCTCCAGGCTT
TCTCAGCAAATGTGTCCTGGACATCGACATATACAAAAATCGACCCTCAG
TTCACGAACATGTTAAATTGCCCAACCCGGAG
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