mRNA_H-elongata_contig134740.2457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134740.2457.1
Unique NamemRNA_H-elongata_contig134740.2457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 9.470e-32
Identity = 58/131 (44.27%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVGEI 390
            E+N R++ A   F + +  +YD+   PL LK+R+L+A+V+ET+LY CV W+ +   Y  +R AHH FL RC+ W+K  R D P+SY   L+ A   ES+E  +  RR+ FAGF+A M D RLPK  ++GE+
Sbjct:  144 EINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGEL 274          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.050e-29
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVGEI 390
            E+  R   AW  + + +  +YD+     +LK+R+L+A+V+ET+LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D RLPK +++GE+
Sbjct:   10 EITSRSCRAWKCYRRKSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEM 140          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.780e-27
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   58 VYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            +YD      +LK+R+L+A+V+ET+LY C +WSP   HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D+RLPK +++G
Sbjct:    1 MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 110          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.030e-27
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  RI  AW  + + +  +YD+     +LK+R+L+A+V++T+LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D RLPK +++G
Sbjct:   67 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 195          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.180e-27
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  RI  AW  + + +  +YD+     +LK+R+L+A+V++T+LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D RLPK +++G
Sbjct:   97 EITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 225          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.500e-27
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  R   AW  + + +  +YD+     +LK+R+L+A+V+ET+LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D+RLPK +++G
Sbjct:   86 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 214          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K5W0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.180e-26
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  R   AW  + + +  +YD+     +LK+R+L+A+V+E +LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D+RLPK +++G
Sbjct:   67 EITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVEHLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLG 195          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5K065_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K065_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.970e-26
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  R   AW  + + +  +YD+     +LK+R+L+A+V+ET+LY C +WS  V HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D RLPK +++G
Sbjct:  599 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTVEHYTKLNGTHRQFLTRCIGWSKRQRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 727          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5JTX2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.530e-26
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKARSE-SIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  R   AW  + +    +YD+     +LK+R+L+  V+ET+LY C +WS    HY  +   H  FLTRC+DW K  R+D P+SY + L++A  E +IE  +  RR+ FAGF+  M+D+RLPK +++G
Sbjct:  218 EITSRSCRAWKCYRRNRALMYDRRRANRQLKIRLLQVQVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDWSKRKRSDRPLSYAEALIQAGCEQTIEATVRKRRLCFAGFVMRMEDSRLPKRILIG 346          
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.830e-26
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNWSPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKAR-SESIETIMSWRRILFAGFMASMDDTRLPKYVIVG 384
            E+  R   AW  + + +  +YD+     +LK+R+L+A+V+ET+LY C +WS    HY  +   H  FLTRC+ W K  R+D P+SY   L++A   E+IE  +  RR+ FAGF+  M+D RLPK +++G
Sbjct:  187 EITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLG 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134740.2457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J8_9PHAE9.470e-3244.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6M5_9PHAE6.050e-2940.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J747_9PHAE3.780e-2744.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE4.030e-2740.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE6.180e-2740.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCS2_9PHAE7.500e-2740.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5W0_9PHAE2.180e-2639.53Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K065_9PHAE2.970e-2641.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTX2_9PHAE3.530e-2640.31Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5T8_9PHAE3.830e-2640.31Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134740contigH-elongata_contig134740:180..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog28377.ENSACAP00000023453
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.2036507-CDS-H-elongata_contig134740:179..5691622929800.2036507-CDS-H-elongata_contig134740:179..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134740 180..569 +
1691679162.317893-CDS-H-elongata_contig134740:179..5691691679162.317893-CDS-H-elongata_contig134740:179..569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134740 180..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134740.2457.1prot_H-elongata_contig134740.2457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134740 180..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134740.2457.1

>prot_H-elongata_contig134740.2457.1 ID=prot_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
EVNRRIRNAWCSFWKYTLEVYDQLSTPLELKLRMLRADVLETILYDCVNW
SPRVCHYEMMRRAHHSFLTRCLDWRKSNRTDYPISYLDILMKARSESIET
IMSWRRILFAGFMASMDDTRLPKYVIVGEI
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mRNA from alignment at H-elongata_contig134740:180..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134740.2457.1 ID=mRNA_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig134740:180..569+ (Himanthalia elongata Himel1 dioecious)
GAGGTCAACCGGCGCATACGCAACGCATGGTGCAGCTTCTGGAAGTATAC CCTCGAAGTATACGACCAACTGAGCACCCCCCTGGAGCTTAAACTCCGAA TGCTGAGAGCCGACGTACTCGAGACAATACTGTACGACTGCGTCAACTGG AGCCCGCGCGTGTGCCACTATGAAATGATGCGCCGAGCCCACCACAGCTT CTTGACTCGCTGCCTTGATTGGCGAAAGAGCAACCGCACCGATTACCCGA TCTCATATCTAGACATCCTAATGAAGGCGAGAAGCGAAAGCATCGAGACG ATAATGAGCTGGAGGCGGATCTTGTTCGCGGGATTTATGGCTAGCATGGA CGACACGAGACTGCCGAAGTACGTCATAGTCGGAGAAATC
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Coding sequence (CDS) from alignment at H-elongata_contig134740:180..569+

>mRNA_H-elongata_contig134740.2457.1 ID=mRNA_H-elongata_contig134740.2457.1|Name=mRNA_H-elongata_contig134740.2457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig134740:180..569+ (Himanthalia elongata Himel1 dioecious)
GAGGTCAACCGGCGCATACGCAACGCATGGTGCAGCTTCTGGAAGTATAC
CCTCGAAGTATACGACCAACTGAGCACCCCCCTGGAGCTTAAACTCCGAA
TGCTGAGAGCCGACGTACTCGAGACAATACTGTACGACTGCGTCAACTGG
AGCCCGCGCGTGTGCCACTATGAAATGATGCGCCGAGCCCACCACAGCTT
CTTGACTCGCTGCCTTGATTGGCGAAAGAGCAACCGCACCGATTACCCGA
TCTCATATCTAGACATCCTAATGAAGGCGAGAAGCGAAAGCATCGAGACG
ATAATGAGCTGGAGGCGGATCTTGTTCGCGGGATTTATGGCTAGCATGGA
CGACACGAGACTGCCGAAGTACGTCATAGTCGGAGAAATCGAGGTCAACC
GGCGCATACGCAACGCATGGTGCAGCTTCTGGAAGTATACCCTCGAAGTA
TACGACCAACTGAGCACCCCCCTGGAGCTTAAACTCCGAATGCTGAGAGC
CGACGTACTCGAGACAATACTGTACGACTGCGTCAACTGGAGCCCGCGCG
TGTGCCACTATGAAATGATGCGCCGAGCCCACCACAGCTTCTTGACTCGC
TGCCTTGATTGGCGAAAGAGCAACCGCACCGATTACCCGATCTCATATCT
AGACATCCTAATGAAGGCGAGAAGCGAAAGCATCGAGACGATAATGAGCT
GGAGGCGGATCTTGTTCGCGGGATTTATGGCTAGCATGGACGACACGAGA
CTGCCGAAGTACGTCATAGTCGGAGAAATC
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