mRNA_H-elongata_contig13471.2456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13471.2456.1
Unique NamemRNA_H-elongata_contig13471.2456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13471.2456.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.230e-17
Identity = 68/154 (44.16%), Postives = 83/154 (53.90%), Query Frame = 3 
Query:  438 IGMEGRRR--DAGHGNKKAWLAREAGLVVLDME---EPVRVVSTCSTSDRGILSLCGSFVHFVARVQNTTGPEAFSLRVDRSIATKS-PRPFPRQAKTSLELGGGGEKTCSTMGGEITS-----------------EKVVDFVRSQLDGSFALF 830
            +G EG R     G G++ A  AR  G    D+      VRVV+TCSTSDRG+LSL G FVH VARVQNTTGP+ FSLRVD  I T S P P+ R    +    GG     +   G                     ++VV++VRSQ+DGSFALF
Sbjct:  327 VGGEGERFAWTPGEGSRAADGARPKGGGRDDITGEAAAVRVVTTCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPAPYLRPRPAAASGSGGFAPGFTPWDGXXXXXXXXXXXXXXXXXXXXHQEVVEYVRSQIDGSFALF 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13471.2456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKQ1_ECTSI2.230e-1744.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13471contigH-elongata_contig13471:2529..5202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_004360.1
Exons3
Model size1199
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13471.2456.1prot_H-elongata_contig13471.2456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13471 2895..3839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.0760098-UTR-H-elongata_contig13471:2528..28941622929800.0760098-UTR-H-elongata_contig13471:2528..2894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 2529..2894 -
1691679162.2753522-UTR-H-elongata_contig13471:2528..28941691679162.2753522-UTR-H-elongata_contig13471:2528..2894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 2529..2894 -
1622929800.1388981-UTR-H-elongata_contig13471:3839..42381622929800.1388981-UTR-H-elongata_contig13471:3839..4238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 3840..4238 -
1691679162.2990968-UTR-H-elongata_contig13471:3839..42381691679162.2990968-UTR-H-elongata_contig13471:3839..4238Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 3840..4238 -
1622929800.1537337-UTR-H-elongata_contig13471:5158..52021622929800.1537337-UTR-H-elongata_contig13471:5158..5202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 5159..5202 -
1691679162.307659-UTR-H-elongata_contig13471:5158..52021691679162.307659-UTR-H-elongata_contig13471:5158..5202Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13471 5159..5202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.0933404-CDS-H-elongata_contig13471:2894..31321622929800.0933404-CDS-H-elongata_contig13471:2894..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13471 2895..3132 -
1691679162.2835689-CDS-H-elongata_contig13471:2894..31321691679162.2835689-CDS-H-elongata_contig13471:2894..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13471 2895..3132 -
1622929800.1236744-CDS-H-elongata_contig13471:3687..38391622929800.1236744-CDS-H-elongata_contig13471:3687..3839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13471 3688..3839 -
1691679162.291325-CDS-H-elongata_contig13471:3687..38391691679162.291325-CDS-H-elongata_contig13471:3687..3839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13471 3688..3839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13471.2456.1

>prot_H-elongata_contig13471.2456.1 ID=prot_H-elongata_contig13471.2456.1|Name=mRNA_H-elongata_contig13471.2456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MEGRRRDAGHGNKKAWLAREAGLVVLDMEEPVRVVSTCSTSDRGILSLCG
SFVHFVARVQNTTGPEAFSLRVDRSIATKSPRPFPRQAKTSLELGGGGEK
TCSTMGGEITSEKVVDFVRSQLDGSFALF*
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mRNA from alignment at H-elongata_contig13471:2529..5202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13471.2456.1 ID=mRNA_H-elongata_contig13471.2456.1|Name=mRNA_H-elongata_contig13471.2456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2674bp|location=Sequence derived from alignment at H-elongata_contig13471:2529..5202- (Himanthalia elongata Himel1 dioecious)
GCTCGGTCTTTTCGGCGGCGTTGAAAATATTTGCGCTCCTTCAGGTGAAC
TCGTGAAATGAAACCCCGCGAAAGGAACGCCTCTGTAAAATGATACAAGC
CGAGCGGATGTTATACAAAAACGAGGATTTGGGGGGGGGTGGTGGTGGGG
AGGAGGGCGGTGCGCTAGCTCTCGCTCTAAGCAACTTACCCATTTCTGAA
TCGTTGTAACATGATTAGTCATGATGCAGCACTTTTTTAAAAACGATTAG
TCATGATGCAGCACTTTTTTAAAAACGATTAGTCATGATGCAGCACACGA
TTGCAAAGCTTTCGATATCAACGCCGACCAGTGGACGATTAGAGACCAGG
ACAAAAGGGGAATAGCGGGAACAGGGTGGGATGCTTCATGACGAAATGGC
TTGTCGCAGAGAAAGTCAGGGCTTGACTACGGCATGGAGTAGTATGTCCG
AACGTGACCGGAAGGACCAAGGAGAGGATAGCCCAAAGCAAGCGTGCTCG
CTCGTCGTGTTGGTTCGCTCGCTATAGTTGGTTGGCCACAGTGGCGGGAA
CTTGTATTCTCCGGTCGTTTTTGTTTGCCGATGCCATATTATCTTTCTCT
GGCGTTACATATTTTTTCATTTTGTCTGCATGTTGTGTCGTTGAATCTAC
GGCTCTTCGTTCGAACATTCTTTGCCTAGGCATGCGTCCCAACAGCCACA
CGCCCAGTTATTTAACAACTGTGGGTCCTCTTTTAGAGATGTCGCTTTTT
CCGAGTATTATGCATAATTGCCGTTTCCTTTTGTTTGGAAAGAAAGAAAC
ACGTCTTCCTTCTGAAATGGTAGTTTTTCTTCTTTGTGATAACGGGCTGG
ATTATGACGTCACCTTATTTGATAACTCAATCAATCATTAACACACACGC
ATAGGTACTCACTTTGAAATAATAGTGTTATGTGAAAATCTTACTCACGT
GCTGCTGAGCGCAGGACGCGGCGGAGTTTCTAGACAACTCAAGAGCAGAA
GCTTCCACCACCGCCGCAGCAAGGAATACAAACTCCTCCGACCACTCCGC
GACAGCCACAAAAAAACGGTCGGCGCGTACGCCCCTCCAGCCGAATCGTT
CGGCTGCCGCCGCCGCCGGCAGCTTAGCTTCCGCGGACTTGTCCGTTATC
TCATCCCCGCAACAGCAGCAGCAGCAGCTGCAGAAGCAGCACCAAAAGTC
TGGAGGAGGCGAAGGGCAAGCAAGAACATTCGCCACGTCCTCCCCGTCAA
CAGAAGCTCACGAAGGCGGGCCACCGCCGGCCGCGGGGCCGCTCCGGTTT
TGTGAAGAACCACCGAGCGTCAGCGGCGAGCACGGGGATCGAGGAGGAGA
AGAGGGCATAGGCATGGAAGGCCGCCGTCGAGATGCGGGACACGGGAATA
AGAAGGCATGGTTGGCGCGCGAAGCAGGTCTGGTGGTCCTGGACATGGAA
GAGCCCGTGCGCGTGGTTTCGACGTGCTCGACTTCGGACCGAGGCATCCT
GTCCCTCTGCGGCAGGTGCAGCATGGAACGTGGGCAACATCGAAGTCCCC
AGATAGCCTAAAAATATTTCCTCTTCGCGAGGCATGCGAGCCCCCCCTGC
CCCCCCCCTCCCCCCCCCATCCAAATTTCTACCGTTATGAATTAGCGCTA
TACTTGAGAGCTTCAAAATTTCCAAAATCGACTCGATAGCTTTGGAAGCT
GGCTAAAAATATTTGACCTGACCATTCTTGTGAAATAATTAAAATATATA
TTTTAAACTCCCAGTTTTAGGTCGTTAATGGACATTTTCGAAGATAACAG
TCTTCATGGGTCGTTGTCGACAGGAAACGTGTCGCTCGGTTGCCTGATGC
TTTTAATCCCCGCGAGACGAACGTAATACGTTTGGAAAACTCTGCGCTTC
TCAGCTCGATCTCGCCGAGGCAAAGGCATGCTCGTGAATCGCAGTCGCCG
CCAACGCCGGACAAGCTTAGAAACTTCCCAACCTCTTCACGCCCCGCTGA
CCTCACCTCACGCGTTGCCGCCGCTGCAACTTGTATCGTGATGTGTCGTG
GCGCCTCGACGTCGGCGAAGCTTCGTCCACTTCGTTGCCCGGGTGCAGAA
CACTACAGGCCCCGAGGCCTTTTCTCTAAGGGTCGACCGGAGCATCGCCA
CGAAGAGTCCTCGCCCTTTCCCTCGTCAAGCGAAGACATCGCTCGAGCTC
GGCGGCGGCGGGGAGAAGACGTGTTCTACGATGGGGGGAGAGATAACGTC
CGAGAAGGTGGTGGACTTTGTGCGTTCTCAGCTGGACGGATCGTTCGCCT
TGTTCTAAGGAATTCGCGCGCGTGTGTCTGATTATTTGTTCGTGTGTCTC
GGTGGGATCGCTTGCCGTGAGCTTTTAGCGCAATCAGCAGAGTATTATAT
TGGTGGAAAATAGCGCGAACTATTGAAAATGGAGAGGGAAAATGCAACTG
GCCATTGCTCGGCTATATTTGGAAAAATTGGATCAATCAAGAGCAGCCGC
TTGATCAAAATATCTTGCTCATGGCAACTCCACCGATACCTTGGGAAGCT
CTATCGGTTCACTCTATTAAAATATTAGTAATAGCATAGCGAGGTACGGC
AGAGAGGTAATATGGGCCTGGAAGGGGCCGATTGCTGGAGACTTCGGAAT
GAAAAGCGCTCTTCTTCAGTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig13471:2529..5202-

>mRNA_H-elongata_contig13471.2456.1 ID=mRNA_H-elongata_contig13471.2456.1|Name=mRNA_H-elongata_contig13471.2456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig13471:2529..5202- (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCCGCCGTCGAGATGCGGGACACGGGAATAAGAAGGCATGGTT
GGCGCGCGAAGCAGGTCTGGTGGTCCTGGACATGGAAGAGCCCGTGCGCG
TGGTTTCGACGTGCTCGACTTCGGACCGAGGCATCCTGTCCCTCTGCGGC
AGATGGAAGGCCGCCGTCGAGATGCGGGACACGGGAATAAGAAGGCATGG
TTGGCGCGCGAAGCAGGTCTGGTGGTCCTGGACATGGAAGAGCCCGTGCG
CGTGGTTTCGACGTGCTCGACTTCGGACCGAGGCATCCTGTCCCTCTGCG
GCAGCTTCGTCCACTTCGTTGCCCGGGTGCAGAACACTACAGGCCCCGAG
GCCTTTTCTCTAAGGGTCGACCGGAGCATCGCCACGAAGAGTCCTCGCCC
TTTCCCTCGTCAAGCGAAGACATCGCTCGAGCTCGGCGGCGGCGGGGAGA
AGACGTGTTCTACGATGGGGGGAGAGATAACGTCCGAGAAGGTGGTGGAC
TTTGTGCGTTCTCAGCTGGACGGATCGTTCGCCTTGTTCTAACTTCGTCC
ACTTCGTTGCCCGGGTGCAGAACACTACAGGCCCCGAGGCCTTTTCTCTA
AGGGTCGACCGGAGCATCGCCACGAAGAGTCCTCGCCCTTTCCCTCGTCA
AGCGAAGACATCGCTCGAGCTCGGCGGCGGCGGGGAGAAGACGTGTTCTA
CGATGGGGGGAGAGATAACGTCCGAGAAGGTGGTGGACTTTGTGCGTTCT
CAGCTGGACGGATCGTTCGCCTTGTTCTAA
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