mRNA_H-elongata_contig13466.2455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13466.2455.1
Unique NamemRNA_H-elongata_contig13466.2455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13466.2455.1 vs. uniprot
Match: D8LQZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQZ1_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.010e-32
Identity = 56/83 (67.47%), Postives = 75/83 (90.36%), Query Frame = 2 
Query:  296 GSAGAMADDMLIELVGQDYGMMAMLRNDKFKSLIVFLRNIPPNEWVSEVSKTYPGDDEVKGMLGQVGKLMKMMDYYESKKPRK 544
            G++GA+ D++L +LVGQDYGM+A+LRNDKFK LIV LRN+PP+EWV+EV++TYP DDEVK M+GQVGKLM+M+DYY+  +P+K
Sbjct:  146 GASGAIEDELLAQLVGQDYGMLALLRNDKFKGLIVLLRNLPPDEWVAEVARTYPDDDEVKSMMGQVGKLMRMIDYYQKNQPKK 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13466.2455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQZ1_ECTSI7.010e-3267.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13466contigH-elongata_contig13466:3209..8277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size929
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13466.2455.1prot_H-elongata_contig13466.2455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13466 3237..7895 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.921171-UTR-H-elongata_contig13466:3208..32361622929799.921171-UTR-H-elongata_contig13466:3208..3236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13466 3209..3236 +
1691679162.216035-UTR-H-elongata_contig13466:3208..32361691679162.216035-UTR-H-elongata_contig13466:3208..3236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13466 3209..3236 +
1622929800.032234-UTR-H-elongata_contig13466:7895..82771622929800.032234-UTR-H-elongata_contig13466:7895..8277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13466 7896..8277 +
1691679162.266586-UTR-H-elongata_contig13466:7895..82771691679162.266586-UTR-H-elongata_contig13466:7895..8277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13466 7896..8277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.9650178-CDS-H-elongata_contig13466:3236..34371622929799.9650178-CDS-H-elongata_contig13466:3236..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 3237..3437 +
1691679162.2239728-CDS-H-elongata_contig13466:3236..34371691679162.2239728-CDS-H-elongata_contig13466:3236..3437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 3237..3437 +
1622929799.980472-CDS-H-elongata_contig13466:4739..48681622929799.980472-CDS-H-elongata_contig13466:4739..4868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 4740..4868 +
1691679162.2322042-CDS-H-elongata_contig13466:4739..48681691679162.2322042-CDS-H-elongata_contig13466:4739..4868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 4740..4868 +
1622929799.9990697-CDS-H-elongata_contig13466:7226..72681622929799.9990697-CDS-H-elongata_contig13466:7226..7268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 7227..7268 +
1691679162.2420776-CDS-H-elongata_contig13466:7226..72681691679162.2420776-CDS-H-elongata_contig13466:7226..7268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 7227..7268 +
1622929800.0157707-CDS-H-elongata_contig13466:7748..78951622929800.0157707-CDS-H-elongata_contig13466:7748..7895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 7749..7895 +
1691679162.2516205-CDS-H-elongata_contig13466:7748..78951691679162.2516205-CDS-H-elongata_contig13466:7748..7895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13466 7749..7895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13466.2455.1

>prot_H-elongata_contig13466.2455.1 ID=prot_H-elongata_contig13466.2455.1|Name=mRNA_H-elongata_contig13466.2455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
MNASDRLGRRYLPLKSLSCEGDWPRPHTVATAIGRQHRPMARFTVKLLST
AEGADGEDIIMDAPKEKEITTGIGATSEGETANSSAEPLGSAGAMADDML
IELVGQDYGMMAMLRNDKFKSLIVFLRNIPPNEWVSEVSKTYPGDDEVKG
MLGQVGKLMKMMDYYESKKPRK*
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mRNA from alignment at H-elongata_contig13466:3209..8277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13466.2455.1 ID=mRNA_H-elongata_contig13466.2455.1|Name=mRNA_H-elongata_contig13466.2455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5069bp|location=Sequence derived from alignment at H-elongata_contig13466:3209..8277+ (Himanthalia elongata Himel1 dioecious)
CAGGTCAAATCCCTGCCAGCGGTTGAGTATGAACGCTTCGGACCGCCTAG
GACGGCGTTACCTCCCTCTGAAATCATTGAGCTGCGAAGGTGATTGGCCA
CGCCCTCATACGGTGGCAACGGCTATAGGGCGTCAACATCGACCTATGGC
ACGGTTCACGGTGAAACTCTTGTCGACAGCAGAGGGAGCCGATGGAGAGG
ATATAATCATGGACGCTCCCAAAGAGAAGGTAATTCTTACAAGTTTCTTT
TTCTTTATATATACCAGGTACCTGCTAGTCGATTTTCTTTACGTTGGTTT
GTGTGTATCAGTCAGTATATTTTCTTCTCAACATTATATTTGTTTAATGC
TAAACGGTAGTTTATAGCCCCCCTAATCCGCTCACCAATGACATCGTTTT
GGGGAAAGGCGGCGACACGCGCTGCCGTATTTTGTTTATCTTAATCACAG
TACGAGCGCTGTCGCCAACGCCCTAAAGAGCGGGCAACCGGCATGAGCGA
TACAACGCGTGCAACGCCCTGTACCGCTAACCACTTAAACGAAATTAGGG
CGTAAATAACAGTCATGATAACGAGACAGCGGTCTCGGGATGGACTCGAG
CATAAATGTAACCCGAGCATAAAGGTAACCCCCTCAATCCCTCCATTAAT
CCATTTAGTAAAGGATCGTACTCAGCTGCTGGTCATCGTGATGGTTAAAG
TATATGACCGATAATCCTAACGAATCACGGTGGCCAAGGTATGCCGTAGG
TAGGCGATTCAAACGATCACGGACACAGACGTCCCCCTTCCCCATAATGT
TTATCTTGCTCCGGATAGCCATCTAAGCAGCGACGTAATACTATTCTTAG
ACTTAAAGAGGAGGAGGCATAGAACCCCGAAGCTTTTGCTTTACTGGTGG
TCTAGTTAGCGACGTACTATAGCCCGAGAAAAGGCGTCGAAACCAGGGGG
CCTTTAGTTCCTACACTTACGTCATCCTATGAAATTGTTAGGGCACCTGG
TGCTCGGAATGTCGGTAGGAATATAAAAAATGATATTATAAGAGCCATTG
AATGAAATCATTAATAATCCAAATTTGTATCAGAGTTCAGCAAAGATGAA
ATTAATGTCGCCCTTTCCGAGAATGGAGCTAACATCCCTTTTTTTACTTG
AGAAGCCATTGTGAGCCGAACGTAATTCATTATTCGAAGGTAACGCATCA
AATCTGTGCACGGAAGTTCACGAGAGGGACAGTTCTGATCCCGTCCCTTA
TACATTCGGTAACGTATACATACGTAGGTATCCCTTGTTTGACATGACAT
GCAGGCATCTGAAGCACCAGGTTTGCGCTAGATAGGTGATGGGAGAGGAT
GCATGCTAAATATAATAGATTTACACTCCGCAGACGAAGAGTGCGCCTGA
TGAGCAACATACCAATATGAATATATTCTAGTACATAGGACCTGTAGGGT
GAAACGAACGCAAGGGCCGTGTACCACCTCGTGTTGTAAGCGAGTTGTTC
GTCATTCTCGTCGTTTGGCACCGAGGGGCAGGAGATTACCACAGGGATAG
GGGCGACATCGGAAGGGGAGACGGCAAATTCGTCTGCTGAACCTCTGGGC
AGCGCGGGAGCGATGGCTGACGATATGCTGATTGAACTTGTGGGTCAAGA
CTACGGCATGGTGGGTTATAAGACCTCCGACGCTTTCTAGTTTGTGTGTT
CTTTATAGAAAGGGATTACGCCCCTCTGGAGGCTTTACTGAGGGGCAGGT
GTATTGGCTGTTTTTTTTGTTTTGTTTTTTCTTAGTACCGCACCGTAGGA
GACAGGCCGTAATACACCCTCTCTCGACACGGTAGGCAATAAAGACGCCG
CAAGCTATTGGAAGGCTTTCAGGAGGCTTAAAGGTGAATTTTTATTAACT
CTACTGTTTTTTATGTTCCTGGCTGGGTTGAGTAATTACGGTGGGAAAAA
TGGGCGGGAATACCAGTGCCCGTTCGTGTAACACCCTTTCAGCGATAATG
CTGTAAAGTAAAATCGGTTTCATTCTATTCCCGGTTCCCCAGCATCCATC
TATCCGCATTTCACAATATTGAGGTCTTCCATCTATATCCTAAGTCTCTC
TTAATGCGTCAAATCGACGCCTTCGTAACCTCTTTGCGACTTTTCCGCGG
GGATTTCATTCTCGCGCGAAGCGCGAGTTCTAATTTTCATGCGATATTCC
CGGTGCACCCAGCACTTTACCCATACGTCACTCGTCAACTGCTTTTACGG
CTAGCGAAGCGAAGCTCCGTTTATACCGCATGCGATGTACACTGTGAACC
CAGCACTGCACTCCGTATGTCACTCCTCGATTGCTTTTACGGCGAACGAA
GCGAAGCTCCGTTTATGCCCCTTGCGATGCACGCTATGAACCCAGCACTA
CACCCCGTACGTTACTCATCGATTGCTTTTACGGCGATCGCGTTATTTGC
GCGCGTCAAACTGCGCATTGTATCGCGCATCACGTGATGGGGACTGCTGT
AAACATTTTGCACCCATTTTGATAGCGCTTAAAGCATTGATTTTGAAGTC
TATAAACCTACTTGGTTAAAGTAGAGGATGACCCTTTTCGGGCGTGGCTA
GAGGGTTATCGAGTGGGAACAGAAGCGAACAAGCGATTCGACACACAGTC
CCGCGGTCTGTATTGTAGCAACAGTCGTACCCGCGCACCCGGCGGCGAGG
TATTGAGCATCGAGTTTGAGCCTGTCTTCACTTGATTATAGTATCGAAAA
ATGGTGCATCAAGCTACGTGATTAAAGTATAGAGGAATCTTTTGGCGGCG
AGAACAAAAACTCTACGGTAGGCCAACACAACAGTCCCGTGGCCTGTCCA
CCGCAACACGATCCAACACAATACTCCCGCGGCCTGCGCCGCAATAGCAA
TGGTACTCGCGCACTTAGCAGGCGGGCATGGATCTTGTTGGAATGAGACC
TCTTTGTAGCTTAGACCCCAATTCTAGTGAAACTAGACGACTCTACAGAA
CGACAGTGGTCGGATGAGGATCGGTATCGAGATTGTGTTCCGATCGCTCC
CGTTGAGACCTCCTAGTCTGCGCCAGGTCAAGACCATGAAGGGGTTACCA
TACCCAGAACTCAGCTCCCACTCAAGTGATGCTGGGCTATCACCATGCGC
AAGAGTCAAGCCCAAACATTGTCAAATGCCGTCATCGATTTGGGGTAAAA
CGGAAGCGTGCACTGAATTGACTTTCGTCTGTTTGATTCGTACGAAGAAA
TCTACTGATTTGCTGGTAGAACCAATGCCGTTCGATCGTCTCTCAAGGTT
AGGCGACAAGTCTGTTCTCAAAGCACGTCTACAGGAAAAAGACCGCCTGA
AGGGGCTAGCTGACACAATCGTCCGACTGTATTGGCTGGGCTTTGGGTTT
AACAGGTTTAGTTCCCGTACGTAATTTGTTGTTTTGGTTGTTGCTAAACA
TTTTTGTGTTGTGTAGTGAATGAGGTGAACTTATTTTCAAATGAATATAC
TGTATAAGTGGACGGATAAAATTGGTATGGAAAAAAGTCTGAAAGCAACT
ACTTGGCTCTCCCTACTAATGTCATCACTGTTGCTACTGTTGATCGACAA
GGGAAGGCATAAGTTGCATCATCAACAAGGAACAAAAAATGGTCATGACA
AAAAAAAAAACCGACGATGCATGTGCCGCCCCCCACTTACTAAACATACA
CAATTTGACGATTGTTACACCAATATCCAAAACCCGCGAGTTCTAGCGAG
AGCTAAAAATATCTTCTAAAGGGGCTCAGGTGATCTAATGGATCTTTCCC
TGGTCTCGACAGGGTGTTGCTTTCTAACAGGTTGCCCGTAAAATAGTTAT
GCCCCGAATTGATTCTTCGGGGTCTGTGTATATTTATCGCCAGTAGGGTG
CGTGTTTTCATACCGCCCCCCTCCTCGAAATCGGTCACTAAAAACCTTAA
TGCATCTCTTTTCTCTTTCGCCTACTGTCCTTCTGATGGTGATGGGTGAT
GTTTGGGCGTAACTACAGATGGCGATGCTGAGGAACGACAAGTTCAAGAG
CCTTATCGTTGTGAGTGTATTTCGTGCTGTTCGCCTTTGACGCGTTACCG
CAGTCACTGGGGATAGACATGAGACGATGGACGAACAGAATGTAAAATGA
CCTTTAGATCTTTTCAAAGATAAGGCAGGGGTATAAGGGCGTCAATTACA
TCTCCCGAGTATCGAAGCAGCCCCCTGATGCCGTAATTGACAGACGCTCT
TGCGTTATTTTTATATTGGTAATGACGAGAATAGCAGACAAGGTGGTAAA
TAGTGACATCCCGGAAGGTCCTGTGTTGAAACCTCCCCGCCTACACTCCG
TGATAGATTCCACAGCTGCAAATATAATCGACTGAGCGTTCGCCAGCGAA
ACAACTTATCCCAGGCGTACCCCTTGAAGTGGATGAAACAACAGCGCGCA
TATCTATCGACCAAAGTGTCCTGACTACTTGTTTTCCCTTTCTCCTTTTC
TCTCTCTTTCTATATATGGTCTCGATATACCCGGCCGAAGTTTCTGAGAA
ATATCCCGCCAAACGAATGGGTCTCCGAGGTGTCCAAGACCTACCCGGGC
GATGACGAAGTCAAGGGGATGTTGGGGCAGGTCGGAAAGCTCATGAAAAT
GATGGACTACTATGAATCTAAGAAGCCCCGTAAATAATTATCAGTGAAGC
TAAAGTAAATCGCGCTATGGACATCATTTCAGCAGAAACTATTGTAGCGA
AGTGTGGATGATCTTCCTTCTCGAATATATCTTAGGTTATACATATCGCG
CGAAGGGAAGCATTCGAACGTGTGAAATGAAACTATCCATGAAGATAAGA
CAATAAATCGTGTTCGCTGCAATTGAATGGAAAACGAGGTGGTATCTTTT
TCCAGGGCTTCTTGAGGTGTTAAGATTATTCCATAAATTGGATACTTTTC
TATGGCTCCCTGAGGTTTAAGGATAACACCCAGTGTACTTGTTGGTATCG
TTCCCCTTATTATAGGGTGAAGTTTGGGCATCACATGTTGTCATCCTGAC
AGAAGCCCTAAATATCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig13466:3209..8277+

>mRNA_H-elongata_contig13466.2455.1 ID=mRNA_H-elongata_contig13466.2455.1|Name=mRNA_H-elongata_contig13466.2455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at H-elongata_contig13466:3209..8277+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCTTCGGACCGCCTAGGACGGCGTTACCTCCCTCTGAAATCATT
GAGCTGCGAAGGTGATTGGCCACGCCCTCATACGGTGGCAACGGCTATAG
GGCGTCAACATCGACCTATGGCACGGTTCACGGTGAAACTCTTGTCGACA
GCAGAGGGAGCCGATGGAGAGGATATAATCATGGACGCTCCCAAAGAGAA
GATGAACGCTTCGGACCGCCTAGGACGGCGTTACCTCCCTCTGAAATCAT
TGAGCTGCGAAGGTGATTGGCCACGCCCTCATACGGTGGCAACGGCTATA
GGGCGTCAACATCGACCTATGGCACGGTTCACGGTGAAACTCTTGTCGAC
AGCAGAGGGAGCCGATGGAGAGGATATAATCATGGACGCTCCCAAAGAGA
AGGAGATTACCACAGGGATAGGGGCGACATCGGAAGGGGAGACGGCAAAT
TCGTCTGCTGAACCTCTGGGCAGCGCGGGAGCGATGGCTGACGATATGCT
GATTGAACTTGTGGGTCAAGACTACGGCATGGAGATTACCACAGGGATAG
GGGCGACATCGGAAGGGGAGACGGCAAATTCGTCTGCTGAACCTCTGGGC
AGCGCGGGAGCGATGGCTGACGATATGCTGATTGAACTTGTGGGTCAAGA
CTACGGCATGATGGCGATGCTGAGGAACGACAAGTTCAAGAGCCTTATCG
TTATGGCGATGCTGAGGAACGACAAGTTCAAGAGCCTTATCGTTTTTCTG
AGAAATATCCCGCCAAACGAATGGGTCTCCGAGGTGTCCAAGACCTACCC
GGGCGATGACGAAGTCAAGGGGATGTTGGGGCAGGTCGGAAAGCTCATGA
AAATGATGGACTACTATGAATCTAAGAAGCCCCGTAAATAATTTCTGAGA
AATATCCCGCCAAACGAATGGGTCTCCGAGGTGTCCAAGACCTACCCGGG
CGATGACGAAGTCAAGGGGATGTTGGGGCAGGTCGGAAAGCTCATGAAAA
TGATGGACTACTATGAATCTAAGAAGCCCCGTAAATAA
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