mRNA_H-elongata_contig134644.2453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134644.2453.1
Unique NamemRNA_H-elongata_contig134644.2453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.360e-101
Identity = 159/164 (96.95%), Postives = 161/164 (98.17%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPG---CKPLVQQAMAKIIKANPALYVLRERIRKGLQLYR 483
            +VFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVL+AIDLAYNLYSGYGNWFPG   CKPLVQQAMAKIIKANPALYVLRERIRKGLQLYR
Sbjct: 1702 QVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLVAIDLAYNLYSGYGNWFPGTCRCKPLVQQAMAKIIKANPALYVLRERIRKGLQLYR 1865
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 320 bits (821), Expect = 1.690e-98
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDALDIENVQKETIHPRKSYKMNSSCAD LLFA+YKW +SKPSLLHDT D YDGTTSNKYW+D+QLRWGDFDSHDVERYARAK+LDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPL+QQAMAKIIKANPALYVLRERIRKGLQLY
Sbjct: 1641 QVFDQELDALDIENVQKETIHPRKSYKMNSSCADVLLFASYKWQVSKPSLLHDTSDAYDGTTSNKYWLDIQLRWGDFDSHDVERYARAKYLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLLQQAMAKIIKANPALYVLRERIRKGLQLY 1800
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A183EXF4_9BILA (PRP8_domainIV domain-containing protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EXF4_9BILA)

HSP 1 Score: 288 bits (736), Expect = 4.140e-97
Identity = 135/160 (84.38%), Postives = 147/160 (91.88%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL+I+ VQKETIHPRKSYKMNSSCAD LLFA YKW +S+PSLL D+KD  D TT+ KYW+D+QLRWGD+DSHDVERYARAKFLDYTTDNMSIYPSP GVLIAIDLAYNLYS YGNWFPG KPL++QAMAKIIKANPA YVLRERIRKGLQLY
Sbjct:    5 QVFDQELDALEIQTVQKETIHPRKSYKMNSSCADILLFAQYKWHVSRPSLLADSKDVMDNTTTQKYWLDIQLRWGDYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQAMAKIIKANPAFYVLRERIRKGLQLY 164
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A1B6LFS8_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Ecdysozoa TaxID=1206794 RepID=A0A1B6LFS8_9HEMI)

HSP 1 Score: 295 bits (754), Expect = 5.810e-97
Identity = 138/160 (86.25%), Postives = 149/160 (93.12%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL+IE VQKETIHPRKSYKMNSSCAD LLFAAYKW +S+PSLL D+KD  D TT+ KYWIDVQLRWGD+DSHD+ERYARAKFLDYTTDNMSIYPSP GVLIAIDLAYNL+S YGNWFPGCKPL+QQAMAKI+KANPALYVLRERIRK LQLY
Sbjct:   24 QVFDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAYKWNVSRPSLLADSKDTMDNTTTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLY 183
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: G3IJQ5_CRIGR (Pre-mRNA-processing-splicing factor 8 n=4 Tax=Euarchontoglires TaxID=314146 RepID=G3IJQ5_CRIGR)

HSP 1 Score: 291 bits (744), Expect = 4.190e-96
Identity = 136/160 (85.00%), Postives = 149/160 (93.12%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL+IE VQKETIHPRKSYKMNSSCAD LLFA+YKW +S+PSLL D+KD  D TT+ KYWID+QLRWGD+DSHD+ERYARAKFLDYTTDNMSIYPSP GVLIAIDLAYNL+S YGNWFPG KPL+QQAMAKI+KANPALYVLRERIRKGLQLY
Sbjct:  122 QVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLY 281
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK)

HSP 1 Score: 313 bits (803), Expect = 4.380e-96
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL+IENVQKETIHPRKSYKMNSSCAD LLFAAYKW ++KPSLLHDTKD YDGTT+NKYW+DVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSP GVL+A+DLAYNLYSGYGNWFPG KPL+QQAMAKIIKANPALYVLRERIRKGLQLY
Sbjct: 1190 QVFDQELDALEIENVQKETIHPRKSYKMNSSCADVLLFAAYKWQVAKPSLLHDTKDAYDGTTTNKYWLDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPTGVLLAVDLAYNLYSGYGNWFPGAKPLIQQAMAKIIKANPALYVLRERIRKGLQLY 1349
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A7S3LI28_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LI28_9STRA)

HSP 1 Score: 286 bits (731), Expect = 8.990e-96
Identity = 133/160 (83.12%), Postives = 146/160 (91.25%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +V DQELD+L+IENVQKETIHPRKSYKMNSSCAD LL A+YKW ISK SLLHD +D Y+  +S KYWIDVQLRWGDFDSHD+ERYARAKFLDYTTDNM++YPSP GV+IA DLAYNLYSGYGNWFPG KPL+QQAMAKI KANPAL+VLRERIRKGLQLY
Sbjct:   30 QVLDQELDSLEIENVQKETIHPRKSYKMNSSCADVLLLASYKWQISKASLLHDNRDSYESISSTKYWIDVQLRWGDFDSHDIERYARAKFLDYTTDNMTLYPSPTGVIIAFDLAYNLYSGYGNWFPGMKPLMQQAMAKICKANPALHVLRERIRKGLQLY 189
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A8J2WY90_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY90_9STRA)

HSP 1 Score: 311 bits (797), Expect = 2.780e-95
Identity = 143/160 (89.38%), Postives = 154/160 (96.25%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL++ENVQKETIHPRKSYKMNSSCAD LLFAAYKW ++KPSLLHDTKD YDGTTS+KYW+D+QLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSP G L+AIDLAYNLYSGYG WFPGCKPL+QQAMAKI+KANPALYVLRERIRKGLQLY
Sbjct: 1118 QVFDQELDALEVENVQKETIHPRKSYKMNSSCADILLFAAYKWQVAKPSLLHDTKDSYDGTTSSKYWLDIQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPTGALVAIDLAYNLYSGYGAWFPGCKPLIQQAMAKIVKANPALYVLRERIRKGLQLY 1277
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: A0A7S3ZNT2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNT2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 2.850e-95
Identity = 143/160 (89.38%), Postives = 154/160 (96.25%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL++ENVQKETIHPRKSYKMNSSCAD LLFAAYKW ++KPSLLHDTKD YDGTTS+KYW+D+QLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSP G L+AIDLAYNLYSGYG WFPGCKPL+QQAMAKI+KANPALYVLRERIRKGLQLY
Sbjct: 1636 QVFDQELDALEVENVQKETIHPRKSYKMNSSCADILLFAAYKWQVAKPSLLHDTKDSYDGTTSSKYWLDIQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPTGALVAIDLAYNLYSGYGAWFPGCKPLIQQAMAKIVKANPALYVLRERIRKGLQLY 1795
[Close]
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Match: F0YIE3_AURAN (MPN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE3_AURAN)

HSP 1 Score: 311 bits (797), Expect = 2.850e-95
Identity = 147/160 (91.88%), Postives = 153/160 (95.62%), Query Frame = 1 
Query:    1 KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSLLHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLRERIRKGLQLY 480
            +VFDQELDAL+IENVQKETIHPRKSYKMNSSCAD LLFAAYKW ++KPSLLHDTKD YDG TS+KYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSP G LIAIDLAYNLYSGYG WFPGCKPL+QQAMAKIIKANPALYVLRERIRKGLQLY
Sbjct: 1632 QVFDQELDALEIENVQKETIHPRKSYKMNSSCADILLFAAYKWQVAKPSLLHDTKDAYDGATSSKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSIYPSPTGALIAIDLAYNLYSGYGAWFPGCKPLIQQAMAKIIKANPALYVLRERIRKGLQLY 1791
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134644.2453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K085_9PHAE1.360e-10196.95MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C932_9STRA1.690e-9893.13NUC071 domain-containing protein n=1 Tax=Tribonema... [more]
A0A183EXF4_9BILA4.140e-9784.38PRP8_domainIV domain-containing protein n=1 Tax=Go... [more]
A0A1B6LFS8_9HEMI5.810e-9786.25Uncharacterized protein (Fragment) n=2 Tax=Ecdysoz... [more]
G3IJQ5_CRIGR4.190e-9685.00Pre-mRNA-processing-splicing factor 8 n=4 Tax=Euar... [more]
A0A7S3Y066_HETAK4.380e-9691.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3LI28_9STRA8.990e-9683.13Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A8J2WY90_9STRA2.780e-9589.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZNT2_9STRA2.850e-9589.38Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YIE3_AURAN2.850e-9591.88MPN domain-containing protein n=1 Tax=Aureococcus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134644contigH-elongata_contig134644:175..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue7.3e-83
Seed eggNOG ortholog44056.XP_009040176.1
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size486
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134644.2453.1prot_H-elongata_contig134644.2453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134644 175..1323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.5182555-CDS-H-elongata_contig134644:174..3621622929799.5182555-CDS-H-elongata_contig134644:174..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 175..362 +
1691679162.1008904-CDS-H-elongata_contig134644:174..3621691679162.1008904-CDS-H-elongata_contig134644:174..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 175..362 +
1622929799.6104443-CDS-H-elongata_contig134644:654..8451622929799.6104443-CDS-H-elongata_contig134644:654..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 655..845 +
1691679162.1110828-CDS-H-elongata_contig134644:654..8451691679162.1110828-CDS-H-elongata_contig134644:654..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 655..845 +
1622929799.7303894-CDS-H-elongata_contig134644:1216..13231622929799.7303894-CDS-H-elongata_contig134644:1216..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 1217..1323 +
1691679162.1205623-CDS-H-elongata_contig134644:1216..13231691679162.1205623-CDS-H-elongata_contig134644:1216..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134644 1217..1323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134644.2453.1

>prot_H-elongata_contig134644.2453.1 ID=prot_H-elongata_contig134644.2453.1|Name=mRNA_H-elongata_contig134644.2453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
KVFDQELDALDIENVQKETIHPRKSYKMNSSCADALLFAAYKWTISKPSL
LHDTKDQYDGTTSNKYWIDVQLRWGDFDSHDVERYARAKFLDYTTDNMSI
YPSPCGVLIAIDLAYNLYSGYGNWFPGCKPLVQQAMAKIIKANPALYVLR
ERIRKGLQLYR*
back to top

mRNA from alignment at H-elongata_contig134644:175..1323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134644.2453.1 ID=mRNA_H-elongata_contig134644.2453.1|Name=mRNA_H-elongata_contig134644.2453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1149bp|location=Sequence derived from alignment at H-elongata_contig134644:175..1323+ (Himanthalia elongata Himel1 dioecious)
AAGGTGTTTGACCAAGAGCTGGATGCCCTGGATATTGAGAACGTTCAGAA
GGAGACCATCCACCCCCGAAAGTCTTACAAGATGAACTCTTCCTGTGCAG
ATGCCCTCCTCTTCGCCGCGTACAAGTGGACCATCTCTAAGCCCTCCTTG
CTCCACGATACCAAGGATCAGTACGATGGCACCACCAGGTTTGCTATACA
GTAGATAGAATATGGTATATGTTATTGTAATGTCGTAATAGTAATTATTT
TTTGTCCAGCCGAATTTCATTAAAAACAAATGTGGCGAAAAGTTTTTGTC
CAGCCGAGTTTCATAAAAAAAAAATGTGGCCAAAATTTTTTCATCGCCAG
GAGAGAGAAGAGAGAAAGAGAGAGAGAAGTGTATTTTAACAGTGTGGTGT
GTGTTTTTATGCGCCCGCGTGTCGACCCAGATGTGCGATCCTTTTTTTTT
GTGTGTGTGTGTATGTGTGTATGTCGGCAGCAACAAATACTGGATTGACG
TGCAGCTTCGGTGGGGAGACTTCGATTCTCACGACGTCGAGCGTTATGCC
CGCGCTAAATTCTTGGACTACACCACCGATAATATGTCGATCTACCCGTC
TCCCTGTGGGGTGTTGATCGCGATCGACCTCGCCTACAACCTGTACTCGG
GGTACGGGAACTGGTTCCCAGGTAGGTGCTTTCTTCCGAATAATGTGTCT
GTGTGTGTGTGTATTTATGAAATTGCATATAACCGCGCAATCCGGCTCTG
TCATGCTAGCTGTGTGCATTTATTAAATTGCACATCACGAAGCAATCCGG
CCCTGTTGTCCTAGTCCTTTTATGCCACTCGTATTGATCAATCCTCCTAG
GGGGGGATCAATGATACTTATTCCGAAAACGTTGTGTGTGTGTGTGTGTG
TTTAATTGAGTCCTATTTTTGCCCATTTTGCACTGTACTGTCAGCCACTG
GTGTCTGTTATAGTACATTTATTTATCCTCCGCGTTTTCCCGTGTGGCAT
GTGCAACCCCGCCACCGCTCCACACCCTGTTATGGGAGGCAGGCTGCAAG
CCCCTGGTGCAGCAGGCGATGGCGAAGATCATCAAAGCCAATCCTGCCCT
GTACGTGCTTCGCGAGCGCATCCGGAAGGGTCTGCAGCTTTACAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig134644:175..1323+

>mRNA_H-elongata_contig134644.2453.1 ID=mRNA_H-elongata_contig134644.2453.1|Name=mRNA_H-elongata_contig134644.2453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig134644:175..1323+ (Himanthalia elongata Himel1 dioecious)
AAGGTGTTTGACCAAGAGCTGGATGCCCTGGATATTGAGAACGTTCAGAA
GGAGACCATCCACCCCCGAAAGTCTTACAAGATGAACTCTTCCTGTGCAG
ATGCCCTCCTCTTCGCCGCGTACAAGTGGACCATCTCTAAGCCCTCCTTG
CTCCACGATACCAAGGATCAGTACGATGGCACCACCAGAAGGTGTTTGAC
CAAGAGCTGGATGCCCTGGATATTGAGAACGTTCAGAAGGAGACCATCCA
CCCCCGAAAGTCTTACAAGATGAACTCTTCCTGTGCAGATGCCCTCCTCT
TCGCCGCGTACAAGTGGACCATCTCTAAGCCCTCCTTGCTCCACGATACC
AAGGATCAGTACGATGGCACCACCAGCAACAAATACTGGATTGACGTGCA
GCTTCGGTGGGGAGACTTCGATTCTCACGACGTCGAGCGTTATGCCCGCG
CTAAATTCTTGGACTACACCACCGATAATATGTCGATCTACCCGTCTCCC
TGTGGGGTGTTGATCGCGATCGACCTCGCCTACAACCTGTACTCGGGGTA
CGGGAACTGGTTCCCAGCAACAAATACTGGATTGACGTGCAGCTTCGGTG
GGGAGACTTCGATTCTCACGACGTCGAGCGTTATGCCCGCGCTAAATTCT
TGGACTACACCACCGATAATATGTCGATCTACCCGTCTCCCTGTGGGGTG
TTGATCGCGATCGACCTCGCCTACAACCTGTACTCGGGGTACGGGAACTG
GTTCCCAGGCTGCAAGCCCCTGGTGCAGCAGGCGATGGCGAAGATCATCA
AAGCCAATCCTGCCCTGTACGTGCTTCGCGAGCGCATCCGGAAGGGTCTG
CAGCTTTACAGGTGAGCTGCAAGCCCCTGGTGCAGCAGGCGATGGCGAAG
ATCATCAAAGCCAATCCTGCCCTGTACGTGCTTCGCGAGCGCATCCGGAA
GGGTCTGCAGCTTTACAGGTGA
back to top