mRNA_H-elongata_contig13457.2450.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13457.2450.1
Unique NamemRNA_H-elongata_contig13457.2450.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 82.0 bits (201), Expect = 7.640e-16
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   20 SIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            ++R  + +  I +WE +Q+D+   YL   +EEEI++E PEG+ D   +V  LK  +YG   AG +W K    +L   GF R+ ADPCV+     GK I IL ++VD +
Sbjct:  947 AVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGK-ITILTVWVDDI 1053          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2H6NG14_MICLE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6NG14_MICLE)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-15
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            PT    S+++ L    ILN +  Q DV+  YL A+++EEIYI  P G+RD +     L K +YG   +GL+W+     KL + GF +S  D CVF +        ILV YVD +
Sbjct:    5 PTVRNESVKIALTTATILNLKVLQFDVETAYLHADLDEEIYIRGPPGFRDREGDTWFLNKSLYGLKQSGLMWYLCLKDKLNSMGFIKSDTDECVFTKRSKNSYEIILV-YVDDI 117          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A151THM1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151THM1_CAJCA)

HSP 1 Score: 80.9 bits (198), Expect = 1.940e-15
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR++L ++  ++ E +Q+DV   +L  +++EEIY+E PEG+    K+  V  LKK +YG   A   W+K F   + ++GF+R+ ADPCV+    P     IL++YVD +
Sbjct:  894 PVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEIYMEQPEGFEVKGKEDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLILLLYVDDM 1009          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2P6Q6P3_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6P3_ROSCH)

HSP 1 Score: 80.5 bits (197), Expect = 2.390e-15
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR++L +   ++ E +Q+DV   +L  ++EEEIY+E PEG+   +KQ  V  LKK +YG   A   W+K F   +   G++R+ ADPCV+ +   G    IL++YVD +
Sbjct:   68 PVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVERKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDM 183          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 77.4 bits (189), Expect = 5.050e-15
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query:   20 SIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            SIR +L + ++ NWE  Q+DV   YL  +++EEIY+  PEG+ D    V  L K +YG   +G  W +    KL   G+++ +ADPCV+ +   G+V  I+ ++VD L
Sbjct:   64 SIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEV-QIITVWVDDL 170          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A2P6SP23_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SP23_ROSCH)

HSP 1 Score: 79.0 bits (193), Expect = 9.170e-15
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR++L +   ++ E +Q+DV   +L  ++EEEIY+E PEG+    KQ  V  LKK +YG   A   W+K F   +   G++R+ ADPCV+ +   G    IL++YVD +
Sbjct:  907 PVVKMTSIRIILGMAASMDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDADPCVYLQRFTGGNFIILLLYVDDM 1022          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.160e-14
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 2
Query:    8 PAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQVGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P+  SI+ V+ +      +  Q DV   Y+ A ++EEIY+  PEG      +V  +++ +YG   +G  WW      L   G+E+ + DPCVFR+V+ G+V+ ++VIYVD +
Sbjct:  233 PSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDI 344          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: A0A6N2MP88_SALVM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MP88_SALVM)

HSP 1 Score: 78.2 bits (191), Expect = 1.670e-14
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR+VL I   LN E +QVDV   +L  +++EEIY+E PEG+    K+  V  LK+ +YG   A   W+K F   +   GF+R+ +D CVF +  P     IL++YV  +
Sbjct:  464 PVVKMSSIRVVLGIAASLNLEVEQVDVKTVFLHGDLDEEIYMEQPEGFEAKSKEQLVCKLKRSLYGLEQAPRQWYKKFDSFMEGHGFDRTTSDHCVFMKRFPDGNFIILLLYVGDM 579          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: UPI001EFFA561 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001EFFA561)

HSP 1 Score: 78.2 bits (191), Expect = 1.690e-14
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR VL +   LN E +Q+DV   +L  ++EEEIY+E PEG++   K+  V  LKK +YG   A   W+K F   +G +G++++ +D CVF +        IL++YVD +
Sbjct:  661 PVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFKVKGKENFVCKLKKSLYGLKQAPRQWYKKFEFVMGEQGYKKTSSDHCVFVQKFSDNDFIILLLYVDDM 776          
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Match: UPI001F2C2DB3 (hypothetical protein n=1 Tax=Corynebacterium pseudokroppenstedtii TaxID=2804917 RepID=UPI001F2C2DB3)

HSP 1 Score: 77.8 bits (190), Expect = 1.870e-14
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 PTPAQLSIRMVLWIIMILNWEAQQVDVDMTYLEANVEEEIYIELPEGYRDSKKQ--VGLLKKVMYGFVHAGLLWWKPFGVKLGAKGFERSQADPCVFRRVLPGKVIAILVIYVDGL 343
            P     SIR VL +   LN E +Q+DV   +L  ++EEEIY+E PEG++   K+  V  LKK +YG   A   W+K F   +G +G++++ +D CVF +        IL++YVD +
Sbjct:   80 PVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFKVKGKENFVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYKKTSSDHCVFVQKFSDNDFIILLLYVDDM 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13457.2450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C3AKI0_9AGAM7.640e-1638.89Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A2H6NG14_MICLE1.450e-1538.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151THM1_CAJCA1.940e-1537.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6Q6P3_ROSCH2.390e-1537.93Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A401GXA0_9APHY5.050e-1537.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SP23_ROSCH9.170e-1537.93Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A6H5J7P7_9PHAE1.160e-1434.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6N2MP88_SALVM1.670e-1438.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001EFFA5611.690e-1437.93DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI001F2C2DB31.870e-1437.93hypothetical protein n=1 Tax=Corynebacterium pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13457contigH-elongata_contig13457:3263..3608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929799.3409746-CDS-H-elongata_contig13457:3262..36071622929799.3409746-CDS-H-elongata_contig13457:3262..3607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13457 3263..3607 +
1691679162.052909-CDS-H-elongata_contig13457:3262..36071691679162.052909-CDS-H-elongata_contig13457:3262..3607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13457 3263..3607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13457.2450.1prot_H-elongata_contig13457.2450.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13457 3263..3607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13457.2450.1

>prot_H-elongata_contig13457.2450.1 ID=prot_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
PDPSAVEYQDGSLDYYDSQLGGTTGRRRYDLPRSQRGRRNIHRTSGRVPR
FQKTSRTVEKGHVWLRPRRPPMVETVWSQAGGKGVRAISSRSVRVSAGTT
RESDRHPRDLRGRPT
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mRNA from alignment at H-elongata_contig13457:3263..3608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13457.2450.1 ID=mRNA_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=346bp|location=Sequence derived from alignment at H-elongata_contig13457:3263..3608+ (Himanthalia elongata Himel1 dioecious)
CCCGACCCCAGCGCAGTTGAGTATCAGGATGGTTCTCTGGATTATTATGA TTCTCAACTGGGAGGCACAACAGGTCGACGTCGATATGACTTACCTAGAA GCCAACGTGGAAGAAGAAATATACATCGAACTTCCGGAAGGGTACCGCGA TTCCAAAAAACAAGTAGGACTGTTGAAAAAGGTCATGTATGGCTTCGTCC ACGCCGGCCTCCTATGGTGGAAACCGTTTGGAGTCAAGCTGGGGGCAAAG GGGTTCGAGCGATCTCAAGCCGATCCGTGCGTGTTTCGGCGGGTACTACC CGGGAAAGTGATCGCCATCCTCGTGATTTACGTGGACGGCCTACTG
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Coding sequence (CDS) from alignment at H-elongata_contig13457:3263..3608+

>mRNA_H-elongata_contig13457.2450.1 ID=mRNA_H-elongata_contig13457.2450.1|Name=mRNA_H-elongata_contig13457.2450.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig13457:3263..3608+ (Himanthalia elongata Himel1 dioecious)
CCCGACCCCAGCGCAGTTGAGTATCAGGATGGTTCTCTGGATTATTATGA
TTCTCAACTGGGAGGCACAACAGGTCGACGTCGATATGACTTACCTAGAA
GCCAACGTGGAAGAAGAAATATACATCGAACTTCCGGAAGGGTACCGCGA
TTCCAAAAAACAAGTAGGACTGTTGAAAAAGGTCATGTATGGCTTCGTCC
ACGCCGGCCTCCTATGGTGGAAACCGTTTGGAGTCAAGCTGGGGGCAAAG
GGGTTCGAGCGATCTCAAGCCGATCCGTGCGTGTTTCGGCGGGTACTACC
CGGGAAAGTGATCGCCATCCTCGTGATTTACGTGGACGGCCTACTCCCGA
CCCCAGCGCAGTTGAGTATCAGGATGGTTCTCTGGATTATTATGATTCTC
AACTGGGAGGCACAACAGGTCGACGTCGATATGACTTACCTAGAAGCCAA
CGTGGAAGAAGAAATATACATCGAACTTCCGGAAGGGTACCGCGATTCCA
AAAAACAAGTAGGACTGTTGAAAAAGGTCATGTATGGCTTCGTCCACGCC
GGCCTCCTATGGTGGAAACCGTTTGGAGTCAAGCTGGGGGCAAAGGGGTT
CGAGCGATCTCAAGCCGATCCGTGCGTGTTTCGGCGGGTACTACCCGGGA
AAGTGATCGCCATCCTCGTGATTTACGTGGACGGCCTACT
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