mRNA_H-elongata_contig134341.2437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134341.2437.1
Unique NamemRNA_H-elongata_contig134341.2437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.040e-30
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 QKTSGSSNQPKRASPDSGFLRGGAATKKNL--------AGKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            QKT GSS QPKRASP+S     GAA KK          AGK+TR RL  G++L+VLKLLD K  YAEI RRY  S+S ISLIK  R +LEQ AATNARS TSKSSRRG+FPE+
Sbjct:   60 QKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPEL 172          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 6.910e-29
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 QKTSGSSNQPKRASPDSGFLRGGAATKKNL--------AGKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            QKT GSS QPKRASP+S     GAA KK          AGK+TR RL  G++L+VLKLLD K  YAEI RRY  S+S ISLIK  R +LEQ AATNARS TSKSSRRG+FPE+
Sbjct:   60 QKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPEL 172          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.050e-28
Identity = 70/113 (61.95%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 QKTSGSSNQPKRASPDSGFLRGGAATKKNL--------AGKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            QKT GSS QPKRASP+S     GAA KK          AGK+TR RL  G++L+VLKLLD K  +AEI RRY  S+S ISLIK  R +LEQ AATNARS TSKSSRRG+FPE+
Sbjct:   39 QKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTHAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPEL 151          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5JQU7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.110e-7
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   94 GKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            G  +R RL   +KL++LKLLD KV++A+I  R+ CS   I  +K  R K+E   AT A   + K++R+G+FPEV
Sbjct:   85 GTGSRARLDNNKKLEILKLLDQKVSHAQIADRFTCSLRFIGTVKAGRQKVE--IATAAGCGSQKAARKGDFPEV 156          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5JME0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME0_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.280e-7
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   94 GKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            G  +R RL   +KL++LK+LD KV++A+I  R+ CS   I  +K  R K+E    T A   + KS+R+G+FPEV
Sbjct:   85 GTGSRARLDNNKKLEILKMLDQKVSHAQIADRFKCSLRLIETVKAGRQKVE--TGTAAGCGSQKSARKGDFPEV 156          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5KD82_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD82_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.880e-7
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   94 GKATRKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            G A+R RL   +KLD+LK+LD KV++A+I  R+ CS   I      R K+E   AT A   + K +R+G+FPEV
Sbjct:   85 GTASRARLDSNKKLDILKMLDQKVSHAQIADRFKCSLRFIGTANAGRQKVE--TATAAGCGSQKIARKGDFPEV 156          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5JCH9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.080e-7
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  130 KLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEVCSLCF 330
            KL++LKLLD KVA  +   R+GCS      +K DR K+E  AAT A   T K++R+G+FPEV ++  
Sbjct:   96 KLEILKLLDAKVAQVQNAERFGCSERFGRTVKADRKKVE--AATAAGGGTQKTARKGDFPEVDAIAL 160          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5LPY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPY8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.230e-7
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  106 RKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            R R+ +  KLD+LKL+D K++YA+I  R+ CS   +  +K DR K+E  AA  A S   K++R+ EF E+
Sbjct:   93 RARVDINGKLDILKLIDAKISYAQIADRFKCSVRFLVTLKSDRKKIEAAAAAGAGSQ--KTARKAEFQEM 160          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5J7S2_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7S2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.360e-6
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   31 KRASPDSGFLRGGAATKKNLAG---KAT--RKRLTLGEKLDVLKLLDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            ++A+P  G   G +  +K  +G   K T  R RL   +KL++LK+LD KV++A+I  R+ C    I  +K  R K+E   AT A  ++ K++R+G+FPEV
Sbjct:   59 RKATPAKGAGAGPSKRQKQTSGGCKKGTGFRARLDNNKKLEILKMLDQKVSHAQIADRFKCLLRFIGTVKAGRQKVE--TATAAGCSSQKTARKGDFPEV 156          
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.260e-6
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  106 RKRLTLGEKLDVLKLLDNK-VAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRGEFPEV 315
            R RLTLG+KL++L LLD K ++  EI   Y CS   +S    +R+ LE EAA++ R   SK  R   FPEV
Sbjct:  138 RARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEV 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134341.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L4Y6_9PHAE3.040e-3062.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH6_9PHAE6.910e-2962.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE3.050e-2861.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQU7_9PHAE1.110e-744.59HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JME0_9PHAE1.280e-743.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD82_9PHAE3.880e-744.59HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JCH9_9PHAE7.080e-746.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LPY8_9PHAE9.230e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7S2_9PHAE1.360e-638.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KX95_9PHAE4.260e-646.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134341contigH-elongata_contig134341:1245..1577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929798.154183-CDS-H-elongata_contig134341:1244..15771622929798.154183-CDS-H-elongata_contig134341:1244..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134341 1245..1577 +
1691679161.5805967-CDS-H-elongata_contig134341:1244..15771691679161.5805967-CDS-H-elongata_contig134341:1244..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134341 1245..1577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134341.2437.1prot_H-elongata_contig134341.2437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134341 1245..1577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134341.2437.1

>prot_H-elongata_contig134341.2437.1 ID=prot_H-elongata_contig134341.2437.1|Name=mRNA_H-elongata_contig134341.2437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
QKTSGSSNQPKRASPDSGFLRGGAATKKNLAGKATRKRLTLGEKLDVLKL
LDNKVAYAEIQRRYGCSSSGISLIKKDRSKLEQEAATNARSATSKSSRRG
EFPEVCSLCF*
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mRNA from alignment at H-elongata_contig134341:1245..1577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134341.2437.1 ID=mRNA_H-elongata_contig134341.2437.1|Name=mRNA_H-elongata_contig134341.2437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig134341:1245..1577+ (Himanthalia elongata Himel1 dioecious)
CAGAAGACATCCGGCTCCTCGAACCAGCCTAAGCGTGCCTCGCCCGACTC GGGATTTCTCCGAGGTGGCGCGGCGACGAAAAAGAATCTAGCCGGGAAAG CGACGCGCAAGCGGCTCACCCTCGGCGAAAAGCTTGATGTTCTCAAGCTC TTGGACAACAAGGTGGCCTACGCCGAGATACAGCGCCGCTACGGCTGCAG CAGCAGCGGGATTAGCTTGATCAAGAAGGACCGGTCGAAGCTGGAGCAGG AAGCAGCAACCAACGCACGCAGTGCAACATCCAAGAGCTCGCGAAGGGGA GAATTTCCGGAGGTGTGTTCGCTGTGTTTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig134341:1245..1577+

>mRNA_H-elongata_contig134341.2437.1 ID=mRNA_H-elongata_contig134341.2437.1|Name=mRNA_H-elongata_contig134341.2437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig134341:1245..1577+ (Himanthalia elongata Himel1 dioecious)
CAGAAGACATCCGGCTCCTCGAACCAGCCTAAGCGTGCCTCGCCCGACTC
GGGATTTCTCCGAGGTGGCGCGGCGACGAAAAAGAATCTAGCCGGGAAAG
CGACGCGCAAGCGGCTCACCCTCGGCGAAAAGCTTGATGTTCTCAAGCTC
TTGGACAACAAGGTGGCCTACGCCGAGATACAGCGCCGCTACGGCTGCAG
CAGCAGCGGGATTAGCTTGATCAAGAAGGACCGGTCGAAGCTGGAGCAGG
AAGCAGCAACCAACGCACGCAGTGCAACATCCAAGAGCTCGCGAAGGGGA
GAATTTCCGGAGGTGTGTTCGCTGTGTTTTTAGCAGAAGACATCCGGCTC
CTCGAACCAGCCTAAGCGTGCCTCGCCCGACTCGGGATTTCTCCGAGGTG
GCGCGGCGACGAAAAAGAATCTAGCCGGGAAAGCGACGCGCAAGCGGCTC
ACCCTCGGCGAAAAGCTTGATGTTCTCAAGCTCTTGGACAACAAGGTGGC
CTACGCCGAGATACAGCGCCGCTACGGCTGCAGCAGCAGCGGGATTAGCT
TGATCAAGAAGGACCGGTCGAAGCTGGAGCAGGAAGCAGCAACCAACGCA
CGCAGTGCAACATCCAAGAGCTCGCGAAGGGGAGAATTTCCGGAGGTGTG
TTCGCTGTGTTTTTAG
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