mRNA_H-elongata_contig134241.2430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig134241.2430.1
Unique Name	mRNA_H-elongata_contig134241.2430.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.030e-32
Identity = 60/126 (47.62%), Postives = 88/126 (69.84%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA+ Y+HL  +++EGK+  +S  IKD+DG +LR    IR+RWARWF+ LLNTKSP ++L  +  + + +WP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:   26 RQLEKKSREGDQADFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDL--HAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGD 149

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.610e-32
Identity = 61/126 (48.41%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR    IR+RWARWF+ LLNTKSP ++L  +  + + +WP   P+   P+++E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:   48 RQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDL--HAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGD 171

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.770e-31
Identity = 60/126 (47.62%), Postives = 87/126 (69.05%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HL  +++EGK+  +S  IKD+DG +LR    IR+RWARWF+ LLNTKSP ++L  +  + + +WP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:   25 RQLEKKSREGDQAGFYRHLNMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDL--HAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGD 148

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5KJR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJR4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.010e-30
Identity = 59/126 (46.83%), Postives = 86/126 (68.25%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S   KD+DG ++R    IR+RWARWF+ LLNTKSP ++L  +  + + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL  + L GD
Sbjct:   26 RQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNTKDEDGKVIRDPTFIRQRWARWFHXLLNTKSPTIDL--HAADKVKQWPTYVPLDDIPSLPEVEEAVREMANRKAVGPDDLPAELITLFLDGD 149

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.430e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR   L R+RWARWF+ LLNTKSP ++L  + T+ + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:  259 RQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDL--HATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 382

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.470e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR   L R+RWARWF+ LLNTKSP ++L  + T+ + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:   44 RQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDL--HATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 167

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.490e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR   L R+RWARWF+ LLNTKSP ++L  + T+ + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:  397 RQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDL--HATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 520

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.530e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR   L R+RWARWF+ LLNTKSP ++L  + T+ + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:  509 RQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDL--HATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 632

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.560e-30
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR   L R+RWARWF+ LLNTKSP ++L  + T+ + QWP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:  630 RQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDL--HATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGD 753

[Close]

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 8.540e-30
Identity = 61/126 (48.41%), Postives = 88/126 (69.84%), Query Frame = 1

Query:    1 RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIRERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAIRLLANGKAVGPDGVSIELYKVALTGD 378
            R+LE + REGDQA  Y+HLK +++EGK+  +S  IKD+DG +LR    IR+RWARWF+ LLNTKSP ++L  +  + + +WP   P+   P++ E+ +A+R +AN KAVGPD +  EL K+ L GD
Sbjct:  212 RQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDL--HAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGD 335

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot

BLAST of mRNA_H-elongata_contig134241.2430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K0P7_9PHAE	4.030e-32	47.62	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L012_9PHAE	6.610e-32	48.41	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXZ7_9PHAE	1.770e-31	47.62	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KJR4_9PHAE	3.010e-30	46.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8Z5_9PHAE	6.430e-30	50.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JUB0_9PHAE	6.470e-30	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC90_9PHAE	6.490e-30	50.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JQH5_9PHAE	6.530e-30	50.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KDI8_9PHAE	6.560e-30	50.00	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5J5Z5_9PHAE	8.540e-30	48.41	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig134241	contig	H-elongata_contig134241:1375..1758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	384
Cds size	384
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929797.6392071-CDS-H-elongata_contig134241:1374..1758	1622929797.6392071-CDS-H-elongata_contig134241:1374..1758	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134241 1375..1758 +
1691679161.4055564-CDS-H-elongata_contig134241:1374..1758	1691679161.4055564-CDS-H-elongata_contig134241:1374..1758	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig134241 1375..1758 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig134241.2430.1	prot_H-elongata_contig134241.2430.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig134241 1375..1758 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig134241:1375..1758+
coding sequence from alignment at H-elongata_contig134241:1375..1758+

protein sequence of mRNA_H-elongata_contig134241.2430.1

>prot_H-elongata_contig134241.2430.1 ID=prot_H-elongata_contig134241.2430.1|Name=mRNA_H-elongata_contig134241.2430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
RELETRVREGDQAEVYKHLKTMNLEGKQDRSSVYIKDKDGLLLRGAVLIR
ERWARWFYTLLNTKSPELELEPNITEGLDQWPENTPVGIQPTMQELTDAI
RLLANGKAVGPDGVSIELYKVALTGDPT

mRNA from alignment at H-elongata_contig134241:1375..1758+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig134241.2430.1 ID=mRNA_H-elongata_contig134241.2430.1|Name=mRNA_H-elongata_contig134241.2430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig134241:1375..1758+ (Himanthalia elongata Himel1 dioecious)
CGCGAACTTGAAACACGTGTTCGAGAAGGTGACCAGGCCGAAGTCTACAA
GCATCTGAAGACGATGAATTTGGAAGGGAAGCAAGACCGCAGCTCGGTGT
ACATCAAAGACAAGGACGGCCTCCTCCTGAGGGGCGCTGTACTTATCCGC
GAACGATGGGCCCGGTGGTTTTACACCCTCTTGAACACCAAATCGCCGGA
GCTCGAGCTCGAGCCGAACATCACTGAAGGCCTCGATCAGTGGCCGGAGA
ACACGCCGGTAGGAATTCAGCCCACGATGCAAGAGCTGACAGACGCCATA
CGCTTGTTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCGATTGA
ACTGTACAAGGTCGCCCTCACCGGCGATCCCACT

Coding sequence (CDS) from alignment at H-elongata_contig134241:1375..1758+

>mRNA_H-elongata_contig134241.2430.1 ID=mRNA_H-elongata_contig134241.2430.1|Name=mRNA_H-elongata_contig134241.2430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig134241:1375..1758+ (Himanthalia elongata Himel1 dioecious)
CGCGAACTTGAAACACGTGTTCGAGAAGGTGACCAGGCCGAAGTCTACAA
GCATCTGAAGACGATGAATTTGGAAGGGAAGCAAGACCGCAGCTCGGTGT
ACATCAAAGACAAGGACGGCCTCCTCCTGAGGGGCGCTGTACTTATCCGC
GAACGATGGGCCCGGTGGTTTTACACCCTCTTGAACACCAAATCGCCGGA
GCTCGAGCTCGAGCCGAACATCACTGAAGGCCTCGATCAGTGGCCGGAGA
ACACGCCGGTAGGAATTCAGCCCACGATGCAAGAGCTGACAGACGCCATA
CGCTTGTTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCGATTGA
ACTGTACAAGGTCGCCCTCACCGGCGATCCCACTCGCGAACTTGAAACAC
GTGTTCGAGAAGGTGACCAGGCCGAAGTCTACAAGCATCTGAAGACGATG
AATTTGGAAGGGAAGCAAGACCGCAGCTCGGTGTACATCAAAGACAAGGA
CGGCCTCCTCCTGAGGGGCGCTGTACTTATCCGCGAACGATGGGCCCGGT
GGTTTTACACCCTCTTGAACACCAAATCGCCGGAGCTCGAGCTCGAGCCG
AACATCACTGAAGGCCTCGATCAGTGGCCGGAGAACACGCCGGTAGGAAT
TCAGCCCACGATGCAAGAGCTGACAGACGCCATACGCTTGTTAGCGAACG
GAAAGGCTGTTGGACCGGACGGAGTTTCGATTGAACTGTACAAGGTCGCC
CTCACCGGCGATCCCACT