mRNA_H-elongata_contig13424.2428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13424.2428.1
Unique NamemRNA_H-elongata_contig13424.2428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.060e-46
Identity = 91/164 (55.49%), Postives = 119/164 (72.56%), Query Frame = 1 
Query:    1 VVSTFMDWCRLIQSIESTLDVRDSLVVLKTRAEASTASKHGVLEDAGYHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAI---VLEENPLLDELSVEYVPQIGFLTTLDKRFGELVPPCFSFAFSQARS 483
            V  TF DWC+LI SIES LDVRD L +++T A A+      V     + +++FLARL++DIDPVVLR CL+GL  VID  ASA+D+++VI+ GFD+ LD+ +  L DLPDIL+ I   VL EN +L+ELSVEYVPQIGF TTL +RFG+L P  F+FAF+Q  +
Sbjct:  167 VAWTFADWCKLITSIESALDVRDGLALMRTSAGAA------VTVGGRFGNESFLARLLDDIDPVVLRKCLEGLCTVIDPVASAQDKDVVIRPGFDEELDNMRERLEDLPDILQQIGQIVLNENSVLEELSVEYVPQIGFFTTLHERFGDLAPDDFTFAFAQGET 324
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BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: A0A7S2L9S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L9S1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.560e-5
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:  118 HGVLEDAG-------YHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRE-LVIQRGFDDNLDSKKNLLADLPDILRAI---VLEENPLLDELSVEYVPQIGFLTTLDKR 429
            H  +ED G       Y S  F+  L++     VLR   + ++ VID   +AE ++  VI  GF + LDS K     L + L  +   VL ++  L  L V ++PQ+GFL ++DKR
Sbjct:  323 HQDMEDMGRGTQQQQYPSVTFIDELLQQCHVPVLRNLRERMASVIDEEVTAEVKDHCVINFGFHEELDSAKETFETLDETLSEVGRQVLAKHEELISLKVVFLPQVGFLVSIDKR 437
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BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: A0A1V2LBQ4_CYBFA (MutS protein 5 n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2LBQ4_CYBFA)

HSP 1 Score: 52.4 bits (124), Expect = 7.860e-5
Identity = 31/107 (28.97%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  142 YHSQAFLARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAIVLEENPLLDE-----LSVEYVPQIGFLTTLDKRFGELVP 447
            +H      RL+ D+D    +  L  +S +ID  +S E+  + I+ GFD  LD  +     L  +L ++  E   +  +     L+V Y+PQ+G+L ++D  F ++VP
Sbjct:  156 FHRTVLGQRLLNDVDTKAFKELLIDISALIDFESSEENNRVYIKDGFDPPLDDMRRTYTGLEQVLESLAAELFQVYHQFPEEALNVAYIPQLGYLISIDISFIQVVP 262
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BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Match: G8ZRG2_TORDC (Uncharacterized protein n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZRG2_TORDC)

HSP 1 Score: 52.4 bits (124), Expect = 8.250e-5
Identity = 32/112 (28.57%), Postives = 57/112 (50.89%), Query Frame = 1 
Query:  163 ARLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLLADLPDILRAIVLEENPLL-----------------DELSVEYVPQIGFLTTLDKRFGELVP 447
            ++L + ++P+ L+  +D + ++ID   S E + +VI  G D+NLD  K L  +L +IL  +      +L                 D ++  Y+PQ+G+L TLD    E++P
Sbjct:  358 SKLGDRVNPLALQGLIDQVENIIDIETSKETKLVVINDGIDENLDKYKKLYNNLENILSDVARNAERVLVQLIERQRGVSAQIEIKDYVNAVYIPQLGYLVTLDVLIEEVLP 469
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13424.2428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKD9_ECTSI5.060e-4655.49MutS protein homolog 5 n=1 Tax=Ectocarpus siliculo... [more]
A0A7S2L9S1_9STRA5.560e-533.91Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1V2LBQ4_CYBFA7.860e-528.97MutS protein 5 n=2 Tax=Cyberlindnera fabianii TaxI... [more]
G8ZRG2_TORDC8.250e-528.57Uncharacterized protein n=1 Tax=Torulaspora delbru... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13424contigH-elongata_contig13424:1143..2928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue2.2e-39
Seed eggNOG ortholog2880.D7FKD9
Preferred nameMSH5
KEGG koko:K08741
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000712,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0007276,GO:0007292,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0048609,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051704,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0221@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size501
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13424.2428.1prot_H-elongata_contig13424.2428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13424 1143..2913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.4660988-CDS-H-elongata_contig13424:1142..13011622929797.4660988-CDS-H-elongata_contig13424:1142..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 1143..1301 -
1691679161.3217108-CDS-H-elongata_contig13424:1142..13011691679161.3217108-CDS-H-elongata_contig13424:1142..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 1143..1301 -
1622929797.4792569-CDS-H-elongata_contig13424:1584..16591622929797.4792569-CDS-H-elongata_contig13424:1584..1659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 1585..1659 -
1691679161.3424885-CDS-H-elongata_contig13424:1584..16591691679161.3424885-CDS-H-elongata_contig13424:1584..1659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 1585..1659 -
1622929797.498622-CDS-H-elongata_contig13424:2262..23541622929797.498622-CDS-H-elongata_contig13424:2262..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 2263..2354 -
1691679161.3511415-CDS-H-elongata_contig13424:2262..23541691679161.3511415-CDS-H-elongata_contig13424:2262..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 2263..2354 -
1622929797.5153031-CDS-H-elongata_contig13424:2753..29131622929797.5153031-CDS-H-elongata_contig13424:2753..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 2754..2913 -
1691679161.359514-CDS-H-elongata_contig13424:2753..29131691679161.359514-CDS-H-elongata_contig13424:2753..2913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13424 2754..2913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.5322673-UTR-H-elongata_contig13424:2913..29281622929797.5322673-UTR-H-elongata_contig13424:2913..2928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13424 2914..2928 -
1691679161.370419-UTR-H-elongata_contig13424:2913..29281691679161.370419-UTR-H-elongata_contig13424:2913..2928Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13424 2914..2928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13424.2428.1

>prot_H-elongata_contig13424.2428.1 ID=prot_H-elongata_contig13424.2428.1|Name=mRNA_H-elongata_contig13424.2428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MDWCRLIQSIESTLDVRDSLVVLKTRAEASTASKHGVLEDAGYHSQAFLA
RLVEDIDPVVLRCCLDGLSDVIDSAASAEDRELVIQRGFDDNLDSKKNLL
ADLPDILRAIVLEENPLLDELSVEYVPQIGFLTTLDKRFGELVPPCFSFA
FSQARSHDPIT*
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mRNA from alignment at H-elongata_contig13424:1143..2928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13424.2428.1 ID=mRNA_H-elongata_contig13424.2428.1|Name=mRNA_H-elongata_contig13424.2428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1786bp|location=Sequence derived from alignment at H-elongata_contig13424:1143..2928- (Himanthalia elongata Himel1 dioecious)
GTGGTGTCGACGTTCATGGACTGGTGCCGGCTAATCCAATCTATCGAGTC
GACTCTGGATGTTCGTGACAGTTTAGTGGTGCTAAAGACCAGGGCAGAAG
CATCGACAGCGAGCAAGCATGGGGTGCTCGAAGATGCTGGTTACCATTCT
CAGGCGTTTCTCGCGCGTCTTGTAGGTGATCGACTCGACTCGAGAAAATC
TGTGTTCGATTACTGCAAGCGCCAGCAGGCCCAGGTAGCTCTCCATGTTC
TCTGTGTGTCTCTCTGGCAAACACAAGCGTTGACAAGAAAGAAGCATGTC
ACCGTTGCCATATGGTACAGCGTACAAAACGATATATGCAGTCGAGATTA
TCCGAAGCAGCTCTTCTCTCTCGAAGTTACGGTCGTGGGGCGCTAATTCA
ATAAAGTCAATATGTACGCTTTGACCCCTTCATGGGAAGGGCGGTGCATC
CTTTTTTAATCTTTTTTTTCTTCTAAAAAACATATGAACTCAATAAAATC
TTCCGAACGTTCACACCCTCCGCTCTTCAGCCCTGATATAATCGCTTTAC
AAAACTTGCGATCAACGTCACCAGAGGATATTGACCCTGTGGTGCTGCGC
TGCTGCTTAGACGGATTATCTGACGTCATCGATTCAGCGGCCAGCGCAGA
GGACAGAGAACTTGTGGTGAGACTTCGAGGCGTGAACCGTGCTCTATGAA
TGCCCATTCGTGTCAAAGTTATGGCATGTCTTATAGAACGTTATCTCTAT
CACTCTAACTTAACTGTCTCAGACTATCCCCCCACCCCGTAACTATATCG
AACAAAATAAACGCGCCGTTGCACCTCTTCATCGATAAGGTTATTGGGCG
ATAAAACGACGGGTCCCCACCGGTCGCGTCCTGCGATTCGAAAATGCGCG
ATCAATTTACCGATACGGATGGGAAGGAAGGTTTTCAAGGATCCCCGGTT
TGGGAAGGGGAATATCAAAATATGTCGCTGTCGGGAATCCAATTGTTCTT
TTCCCGGTCGTAGCGTTCGCTTCAGATGGAATATAAGACCACCGTAGATG
AGCGGATGAGTATGGTTTTGTTCCGAAAGAGAGCAAATATATCCCGTCCC
CTCCTCGAATCTAGGACACTTCAGCGATTTCTGTCCTCCACCATTATCGT
TGGATAGTTTGCACACCCATCGTTTCTTTCAAAGCGAGCACTATCAACCG
TGACATACAATAACTCGCGCATTGTATGTTCCAACACCCTGTACCCGGCG
TTGCTTTGAACTCTCCTAGATCCAGAGAGGCTTCGATGATAACCTGGACA
GCAAGAAGAACCTTCTGGCCGACCTACCCGACATTCTGCGCGCTGTAGGA
AAGGCGAGAGCTCGCAACTGCATGGGGTGCATTGCCTGTGCGGCTGAAAA
AATTAATGGCCATCCATTCTAAAGCCTCGACGATTAGGTTAGGATATTTC
CGTGATAGTTTCCTTGGTTTTCGATAGCGCGCATAGTTTTCACGAATTCA
GGAGTTTCCCACGTCAGCATTTAGCTCTACGTGGTGGGATCTTGGTCCAC
CCGGTATTTGACCGCTGACGAGTCGCAGCAATCTCCGTCGCCCGGCACCA
TATACCCCGCCTCCTGAAACCCCACAGATCGTGCTTGAGGAAAATCCCCT
TCTGGACGAGCTGAGCGTGGAGTATGTGCCGCAGATTGGTTTCTTGACGA
CTCTCGACAAGCGGTTCGGTGAACTTGTGCCACCTTGCTTCAGCTTTGCT
TTTTCCCAGGCGCGCAGTCATGATCCCATCACGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13424:1143..2928-

>mRNA_H-elongata_contig13424.2428.1 ID=mRNA_H-elongata_contig13424.2428.1|Name=mRNA_H-elongata_contig13424.2428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig13424:1143..2928- (Himanthalia elongata Himel1 dioecious)
ATGGACTGGTGCCGGCTAATCCAATCTATCGAGTCGACTCTGGATGTTCG
TGACAGTTTAGTGGTGCTAAAGACCAGGGCAGAAGCATCGACAGCGAGCA
AGCATGGGGTGCTCGAAGATGCTGGTTACCATTCTCAGGCGTTTCTCGCG
CGTCTTGTAGATGGACTGGTGCCGGCTAATCCAATCTATCGAGTCGACTC
TGGATGTTCGTGACAGTTTAGTGGTGCTAAAGACCAGGGCAGAAGCATCG
ACAGCGAGCAAGCATGGGGTGCTCGAAGATGCTGGTTACCATTCTCAGGC
GTTTCTCGCGCGTCTTGTAGAGGATATTGACCCTGTGGTGCTGCGCTGCT
GCTTAGACGGATTATCTGACGTCATCGATTCAGCGGCCAGCGCAGAGGAC
AGAGAACTTGTGAGGATATTGACCCTGTGGTGCTGCGCTGCTGCTTAGAC
GGATTATCTGACGTCATCGATTCAGCGGCCAGCGCAGAGGACAGAGAACT
TGTGATCCAGAGAGGCTTCGATGATAACCTGGACAGCAAGAAGAACCTTC
TGGCCGACCTACCCGACATTCTGCGCGCTATCCAGAGAGGCTTCGATGAT
AACCTGGACAGCAAGAAGAACCTTCTGGCCGACCTACCCGACATTCTGCG
CGCTATCGTGCTTGAGGAAAATCCCCTTCTGGACGAGCTGAGCGTGGAGT
ATGTGCCGCAGATTGGTTTCTTGACGACTCTCGACAAGCGGTTCGGTGAA
CTTGTGCCACCTTGCTTCAGCTTTGCTTTTTCCCAGGCGCGCAGTCATGA
TCCCATCACGTAGATCGTGCTTGAGGAAAATCCCCTTCTGGACGAGCTGA
GCGTGGAGTATGTGCCGCAGATTGGTTTCTTGACGACTCTCGACAAGCGG
TTCGGTGAACTTGTGCCACCTTGCTTCAGCTTTGCTTTTTCCCAGGCGCG
CAGTCATGATCCCATCACGTAG
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