mRNA_H-elongata_contig13409.2419.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13409.2419.1
Unique NamemRNA_H-elongata_contig13409.2419.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13409.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13409contigH-elongata_contig13409:1994..5044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue9.5e-29
Seed eggNOG ortholog2880.D8LQD0
Preferred nameSTAMBP
KEGG koko:K11866,ko:K11867,ko:K12655
KEGG Pathwayko04144,ko04622,map04144,map04622
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0007034,GO:0007049,GO:0007154,GO:0007165,GO:0007259,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008270,GO:0008284,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0014066,GO:0014067,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019904,GO:0019941,GO:0022402,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0031410,GO:0031593,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0035871,GO:0036211,GO:0036459,GO:0042127,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043412,GO:0043523,GO:0043524,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046578,GO:0046580,GO:0046872,GO:0046907,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051179,GO:0051234,GO:0051301,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060548,GO:0061578,GO:0061640,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097696,GO:0097708,GO:0098590,GO:0101005,GO:0120113,GO:0140030,GO:0140096,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1903047
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG2880@2759
EC3.4.19.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size1307
Cds size990
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13409.2419.1prot_H-elongata_contig13409.2419.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13409 2282..5015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.699193-UTR-H-elongata_contig13409:1993..22811622929796.699193-UTR-H-elongata_contig13409:1993..2281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13409 1994..2281 -
1691679161.0884185-UTR-H-elongata_contig13409:1993..22811691679161.0884185-UTR-H-elongata_contig13409:1993..2281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13409 1994..2281 -
1622929796.7655895-UTR-H-elongata_contig13409:5015..50441622929796.7655895-UTR-H-elongata_contig13409:5015..5044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13409 5016..5044 -
1691679161.1369443-UTR-H-elongata_contig13409:5015..50441691679161.1369443-UTR-H-elongata_contig13409:5015..5044Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13409 5016..5044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.7182932-CDS-H-elongata_contig13409:2281..30101622929796.7182932-CDS-H-elongata_contig13409:2281..3010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 2282..3010 -
1691679161.1014903-CDS-H-elongata_contig13409:2281..30101691679161.1014903-CDS-H-elongata_contig13409:2281..3010Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 2282..3010 -
1622929796.733143-CDS-H-elongata_contig13409:4137..42451622929796.733143-CDS-H-elongata_contig13409:4137..4245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 4138..4245 -
1691679161.1118479-CDS-H-elongata_contig13409:4137..42451691679161.1118479-CDS-H-elongata_contig13409:4137..4245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 4138..4245 -
1622929796.7491295-CDS-H-elongata_contig13409:4862..50151622929796.7491295-CDS-H-elongata_contig13409:4862..5015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 4863..5015 -
1691679161.1257482-CDS-H-elongata_contig13409:4862..50151691679161.1257482-CDS-H-elongata_contig13409:4862..5015Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13409 4863..5015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13409.2419.1

>prot_H-elongata_contig13409.2419.1 ID=prot_H-elongata_contig13409.2419.1|Name=mRNA_H-elongata_contig13409.2419.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MAVRGPTRQQLQGKCKVPPVESSKMLKFYFNGGRQLLVQGEAYYKGGQIE
MAYVDLKRFLILAIDRIPQHTTYKQAKYRQDRTWLQNERQRVLSLLEVIA
KKLDDADERYTRSVGKTTAVAAASIPTSTGGKWLGGIPEAPAQGMSAPTP
SAGGNWGENIPEAPTHDPSVPKPSTGGNWRENIPEAPTHNPSVPTPSAGR
NRWKNISDAPTHSGSAPKSPPTFVMPITSHLIAPLSVGGAVKNSVFLFQT
QTPSAPPAPEEDDFNGYSVGVYGGGGAETAMVGYSDEHAYGTGAGSKLEC
IRLQDAFRSPSLDEVCMCVCVANMIDRGQ*
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mRNA from alignment at H-elongata_contig13409:1994..5044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13409.2419.1 ID=mRNA_H-elongata_contig13409.2419.1|Name=mRNA_H-elongata_contig13409.2419.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3051bp|location=Sequence derived from alignment at H-elongata_contig13409:1994..5044- (Himanthalia elongata Himel1 dioecious)
AGGGGGGGCGGCTTCAGGAGGCGTCAGTAATGGCGGTGCGAGGTCCCACG
CGGCAGCAGCTTCAAGGAAAGTGTAAAGTGCCGCCTGTGGAAAGTAGCAA
GATGCTGAAATTTTACTTCAACGGCGGAAGGCAGCTTTTGGTGCAGGGGG
AGGCGTATTACAAGGGGGGTCAGATCGAAATGGTACGTATGGAAGCGGTT
TTTTTTTGTGATTTAAGAGCCAGGGCAGGGGGCATTTTAAGGCCTCTCGT
TTTGTAGTTGGGATTATGTTGTAGGGGGTTAGAAGTGGCGCCAAGCGGGA
CGAGCATAATCTCCGCCAAAGAGAGATGCACGTGTGCATCTTCGAGGAAA
TTCTGCGGTGTCTTGGGGTAACACTTTTCCCCGTCGAAGCTCAAGCTTGC
GATCAATAGAACATTGAATATTTCCCCCACAATATGTATCGTCCCTAGCG
GCACACAAAGTTTCAAACAGTGTGACGCCATCAATAGCACCGGTAAACGC
GTCTGCTGGGCTGCGGTGTCCCTAGGTAACACTTTCCCCCGTCCAAGCTC
AACCTTGCGATGGAAATAACCTTGAAGATTTCCCCCTCGATATGCATCGT
CCCTCGTAGCACACAAGTCTCACATGATGTAAAGCCTCCAACAGCACCAG
TAAACGCGTGCGCTGGGCAGATCAACTTGAAGAGTTGGATAAGGTGGCCA
TCCGCCGTCTGGTGTTCAAGGCTAACGAGGCACCGTTGAGGTATTATCAC
GCTGACAGGAATTTTTCTCATTGCCCGATCCGCGACGACATCGAAACAGG
CCTACGTGGACTTGAAGAGATTCCTGATCTTAGCCATCGATAGGATCCCG
CAACACACCACCTACAAGCAAGCAAAATACCGGCAAGACAGGACTTGGCT
GCAAAATGTAAGCGGCGGTGGCTTCCCTGTCGGGGATACAGAATAATGAT
CCCCCTATCTATCTTCCCTGATGTCTATTGTCTACTCTCTGTTACGTCTC
CGAACGGCGACAAAATATAATACCGCAATACTCTTTACTAAAAGCATCCT
CTTCTATTAAGCGCACCGATGGCGATCTGCCGGAGATTATGTTATTGAAT
TTCGCCCCCAGCCCCTCTCTAGAGTACGCCTCCCCACCATGTGAAACACA
CCGGATGCGTTTGCTGCTACAAAGAGTGTGTGGTCTATAAAAATAGCCGC
AGGGCTTCGAAGAACTGTACTTTTGAGAAAGACATGTTGACTCTTCAGTA
CAGAGGTCTTGAATGTCTAGGGAGTCCAGCATGATGGTTGTTGATGAAAT
AACTGACTTCCAATTGAGGCCGTGACGTGGTGCAACGATTAGTTCTTTTT
GTATTGAAAGTATGCATTCATATTATAGTACGTTTTCCTTTGACCATTGC
AATGTGCCTAGATTACCAACGGAACCAGGCACTACAGTGGCTACTACGAC
ATACGGAAACAGAGATGCATCGATTGTTAAAACGCGTTTTTTAATCTATC
TTTACCAATCGCCCCGGCATCGGTGTCAACTTCGATATGATTCTCATCCT
TGCCCTTGTCCTCCTCGCCCCGCTCCGAGCCAACGTCAGGAATATATTTT
CTCTCCCTCAACCCCATCTGTAAATACCCCCCCTTGGAGATCCATCGGGT
TTTACTCCCCCCCTCCCCACCTGTAAGCTCACCGGTGCGATGTGTCGCGG
GCGATTTTATTTGAATGTGGGTTTTACTAAAAGGGGTACTGTGGTATTAC
CGTAGAGTAACGAAACGAAAATGTGTTGTTGGAAGTTGTAGGGTCTCTAC
ATACAATATATAGACATACAATGTATAGACATATCCGGGAAAGGAAGGGA
TAAAGTGTATTCGATCATTATTCTAGTTCGAAGGCAGAGCCAGCGAAGAA
CTTGAACCTGCCCTCACGTAGTCCTCACTTAACGTAGCCTAACCCAATCT
AAATTCTAACCGACAATCTCTTGTACGAGCACCAGCGGTGTGTGTGACGT
CTAACCCGTTTCGACCACCACCAATGGACGGCAGGAGCGACAGCGAGTGC
TCTCGCTTCTAGAGGTCATTGCGAAAAAACTCGATGACGCCGACGAGCGT
TACACGCGGTCTGTTGGCAAAACGACGGCAGTGGCGGCAGCATCGATCCC
AACATCGACGGGCGGAAAATGGTTGGGAGGCATCCCTGAGGCTCCAGCAC
AAGGCATGTCAGCGCCCACGCCATCGGCCGGGGGAAATTGGGGGGAGAAT
ATCCCCGAGGCTCCCACCCACGACCCGTCAGTGCCCAAGCCATCGACAGG
GGGAAATTGGAGGGAGAATATCCCCGAGGCTCCCACCCACAACCCGTCAG
TACCCACGCCATCGGCAGGGAGAAATCGGTGGAAGAATATCTCCGACGCT
CCCACCCATAGCGGGTCAGCGCCCAAGTCGCCCCCAACCTTTGTGATGCC
GATAACGTCGCATCTGATAGCTCCTCTTTCCGTGGGAGGAGCGGTTAAAA
ATTCCGTTTTCCTGTTTCAGACTCAAACCCCCTCCGCGCCCCCTGCGCCC
GAAGAAGACGACTTCAATGGATATTCGGTAGGTGTCTACGGCGGGGGTGG
GGCGGAGACGGCGATGGTCGGCTACTCTGATGAACACGCGTACGGCACGG
GGGCTGGCAGCAAACTGGAATGTATCCGACTGCAGGACGCTTTTCGAAGT
CCTTCGTTGGATGAGGTGTGTATGTGTGTATGTGTCGCAAATATGATTGA
TCGAGGCCAATAATTCATCCCGTGGCCGACGGGTGAACCATTGTAGTTAC
CACTTGGAATGATCGGGTTGAGGTCTACACGCGCTCCCGGCCAAGTAACC
AACTGTAACGACTCAAATCGCAAAATTGGCGGCATCTACCAAGTCCCTGG
AGCTCACAGTTCCGCGGGGCACTGTACAAATACTAATGTACCAGGTAGAA
TTGTTACAGTAGCACTGTCATGGCAGTTCTATAGTAGCAGGGCTAATATA
ATATGACGAGTACAATATTTTTTTTCAATATACCTTACGTGTGAATGGCG
A
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Coding sequence (CDS) from alignment at H-elongata_contig13409:1994..5044-

>mRNA_H-elongata_contig13409.2419.1 ID=mRNA_H-elongata_contig13409.2419.1|Name=mRNA_H-elongata_contig13409.2419.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig13409:1994..5044- (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGCGAGGTCCCACGCGGCAGCAGCTTCAAGGAAAGTGTAAAGT
GCCGCCTGTGGAAAGTAGCAAGATGCTGAAATTTTACTTCAACGGCGGAA
GGCAGCTTTTGGTGCAGGGGGAGGCGTATTACAAGGGGGGTCAGATCGAA
ATGATGGCGGTGCGAGGTCCCACGCGGCAGCAGCTTCAAGGAAAGTGTAA
AGTGCCGCCTGTGGAAAGTAGCAAGATGCTGAAATTTTACTTCAACGGCG
GAAGGCAGCTTTTGGTGCAGGGGGAGGCGTATTACAAGGGGGGTCAGATC
GAAATGGCCTACGTGGACTTGAAGAGATTCCTGATCTTAGCCATCGATAG
GATCCCGCAACACACCACCTACAAGCAAGCAAAATACCGGCAAGACAGGA
CTTGGCTGCAAAATGCCTACGTGGACTTGAAGAGATTCCTGATCTTAGCC
ATCGATAGGATCCCGCAACACACCACCTACAAGCAAGCAAAATACCGGCA
AGACAGGACTTGGCTGCAAAATGAGCGACAGCGAGTGCTCTCGCTTCTAG
AGGTCATTGCGAAAAAACTCGATGACGCCGACGAGCGTTACACGCGGTCT
GTTGGCAAAACGACGGCAGTGGCGGCAGCATCGATCCCAACATCGACGGG
CGGAAAATGGTTGGGAGGCATCCCTGAGGCTCCAGCACAAGGCATGTCAG
CGCCCACGCCATCGGCCGGGGGAAATTGGGGGGAGAATATCCCCGAGGCT
CCCACCCACGACCCGTCAGTGCCCAAGCCATCGACAGGGGGAAATTGGAG
GGAGAATATCCCCGAGGCTCCCACCCACAACCCGTCAGTACCCACGCCAT
CGGCAGGGAGAAATCGGTGGAAGAATATCTCCGACGCTCCCACCCATAGC
GGGTCAGCGCCCAAGTCGCCCCCAACCTTTGTGATGCCGATAACGTCGCA
TCTGATAGCTCCTCTTTCCGTGGGAGGAGCGGTTAAAAATTCCGTTTTCC
TGTTTCAGACTCAAACCCCCTCCGCGCCCCCTGCGCCCGAAGAAGACGAC
TTCAATGGATATTCGGTAGGTGTCTACGGCGGGGGTGGGGCGGAGACGGC
GATGGTCGGCTACTCTGATGAACACGCGTACGGCACGGGGGCTGGCAGCA
AACTGGAATGTATCCGACTGCAGGACGCTTTTCGAAGTCCTTCGTTGGAT
GAGGTGTGTATGTGTGTATGTGTCGCAAATATGATTGATCGAGGCCAATA
AGAGCGACAGCGAGTGCTCTCGCTTCTAGAGGTCATTGCGAAAAAACTCG
ATGACGCCGACGAGCGTTACACGCGGTCTGTTGGCAAAACGACGGCAGTG
GCGGCAGCATCGATCCCAACATCGACGGGCGGAAAATGGTTGGGAGGCAT
CCCTGAGGCTCCAGCACAAGGCATGTCAGCGCCCACGCCATCGGCCGGGG
GAAATTGGGGGGAGAATATCCCCGAGGCTCCCACCCACGACCCGTCAGTG
CCCAAGCCATCGACAGGGGGAAATTGGAGGGAGAATATCCCCGAGGCTCC
CACCCACAACCCGTCAGTACCCACGCCATCGGCAGGGAGAAATCGGTGGA
AGAATATCTCCGACGCTCCCACCCATAGCGGGTCAGCGCCCAAGTCGCCC
CCAACCTTTGTGATGCCGATAACGTCGCATCTGATAGCTCCTCTTTCCGT
GGGAGGAGCGGTTAAAAATTCCGTTTTCCTGTTTCAGACTCAAACCCCCT
CCGCGCCCCCTGCGCCCGAAGAAGACGACTTCAATGGATATTCGGTAGGT
GTCTACGGCGGGGGTGGGGCGGAGACGGCGATGGTCGGCTACTCTGATGA
ACACGCGTACGGCACGGGGGCTGGCAGCAAACTGGAATGTATCCGACTGC
AGGACGCTTTTCGAAGTCCTTCGTTGGATGAGGTGTGTATGTGTGTATGT
GTCGCAAATATGATTGATCGAGGCCAATAA
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