mRNA_H-elongata_contig13402.2414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13402.2414.1
Unique NamemRNA_H-elongata_contig13402.2414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13402.2414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13402contigH-elongata_contig13402:1295..1810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.4
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog225117.XP_009359787.1
EggNOG free text desc.Protein of unknown function (DUF 659)
EggNOG OGs2C7QK@1,2QQE0@2759,37NU3@33090,3G99Z@35493,4JDN1@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929796.1556783-CDS-H-elongata_contig13402:1294..15501622929796.1556783-CDS-H-elongata_contig13402:1294..1550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 1295..1550 -
1691679160.8646033-CDS-H-elongata_contig13402:1294..15501691679160.8646033-CDS-H-elongata_contig13402:1294..1550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 1295..1550 -
1622929796.1694646-CDS-H-elongata_contig13402:1604..18101622929796.1694646-CDS-H-elongata_contig13402:1604..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 1605..1810 -
1691679160.8763661-CDS-H-elongata_contig13402:1604..18101691679160.8763661-CDS-H-elongata_contig13402:1604..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13402 1605..1810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13402.2414.1prot_H-elongata_contig13402.2414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13402 1295..1810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13402.2414.1

>prot_H-elongata_contig13402.2414.1 ID=prot_H-elongata_contig13402.2414.1|Name=mRNA_H-elongata_contig13402.2414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
IKERNANCRKYIYSPMLSAAYALDPEYRGQDMSDIDVGQVLLDLHTLYER
LLIHHGDDSPTAIKAASQDGKFKGHVFLSYAQNMYPADWWVTYGKIGLPD
LAKVAIRTTSKVPASAGSERNWSLYGDVMGGRHSRMGPERARKLVFVRAN
LRL*
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mRNA from alignment at H-elongata_contig13402:1295..1810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13402.2414.1 ID=mRNA_H-elongata_contig13402.2414.1|Name=mRNA_H-elongata_contig13402.2414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig13402:1295..1810- (Himanthalia elongata Himel1 dioecious)
ATAAAGGAGCGCAACGCGAACTGTCGCAAGTACATCTACTCTCCCATGCT
CTCCGCTGCCTACGCTCTTGACCCCGAGTACCGCGGCCAGGACATGTCCG
ACATCGATGTAGGGCAGGTCCTGCTGGACTTGCACACCCTGTACGAACGG
CTCCTGATCCACCATGGCGACGACTCTCCGACAGCCATCAAAGCCGCAAG
CCAAGAGTCAGGCGGGGGACTGGTGGCGAGAGCAGCATGCCAGTATAGCC
TCTACAAGAGCGGCAAGTTTAAGGGCCACGTGTTCTTGTCGTACGCCCAG
AACATGTACCCCGCAGACTGGTGGGTAACGTACGGAAAAATCGGCCTGCC
GGACTTGGCCAAAGTAGCTATTCGCACGACTTCAAAGGTACCTGCATCGG
CAGGATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCATGGGCGGAAGG
CACTCACGGATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGGC
TAACCTGAGGCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13402:1295..1810-

>mRNA_H-elongata_contig13402.2414.1 ID=mRNA_H-elongata_contig13402.2414.1|Name=mRNA_H-elongata_contig13402.2414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig13402:1295..1810- (Himanthalia elongata Himel1 dioecious)
ATAAAGGAGCGCAACGCGAACTGTCGCAAGTACATCTACTCTCCCATGCT
CTCCGCTGCCTACGCTCTTGACCCCGAGTACCGCGGCCAGGACATGTCCG
ACATCGATGTAGGGCAGGTCCTGCTGGACTTGCACACCCTGTACGAACGG
CTCCTGATCCACCATGGCGACGACTCTCCGACAGCCATCAAAGCCGCAAG
CCAAGAATAAAGGAGCGCAACGCGAACTGTCGCAAGTACATCTACTCTCC
CATGCTCTCCGCTGCCTACGCTCTTGACCCCGAGTACCGCGGCCAGGACA
TGTCCGACATCGATGTAGGGCAGGTCCTGCTGGACTTGCACACCCTGTAC
GAACGGCTCCTGATCCACCATGGCGACGACTCTCCGACAGCCATCAAAGC
CGCAAGCCAAGACGGCAAGTTTAAGGGCCACGTGTTCTTGTCGTACGCCC
AGAACATGTACCCCGCAGACTGGTGGGTAACGTACGGAAAAATCGGCCTG
CCGGACTTGGCCAAAGTAGCTATTCGCACGACTTCAAAGGTACCTGCATC
GGCAGGATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCATGGGCGGAA
GGCACTCACGGATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGG
GCTAACCTGAGGCTGTAGCGGCAAGTTTAAGGGCCACGTGTTCTTGTCGT
ACGCCCAGAACATGTACCCCGCAGACTGGTGGGTAACGTACGGAAAAATC
GGCCTGCCGGACTTGGCCAAAGTAGCTATTCGCACGACTTCAAAGGTACC
TGCATCGGCAGGATCGGAGCGCAATTGGAGTCTGTACGGAGATGTCATGG
GCGGAAGGCACTCACGGATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTC
GTGAGGGCTAACCTGAGGCTGTAG
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