mRNA_H-elongata_contig133926.2408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133926.2408.1
Unique NamemRNA_H-elongata_contig133926.2408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.230e-32
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNP 465
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P
Sbjct:   57 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 203          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.640e-31
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct:  200 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 350          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.740e-30
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct:  913 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1063          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.780e-30
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct: 1292 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1442          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.780e-30
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct: 1312 ADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1462          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.790e-30
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct: 1455 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 1605          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.870e-30
Identity = 68/159 (42.77%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD  A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAVAR    P   H
Sbjct:  548 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 698          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.740e-30
Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD  A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K ++ +  E       +P REAVG++MW +T +RPD++ AVRAVAR    P   H
Sbjct:  504 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRH 654          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.080e-29
Identity = 66/159 (41.51%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L +KF  K++G+ +++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P R+A+G++MW +T +RPD++ A RAVAR    P   H
Sbjct: 1022 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRH 1172          
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.270e-29
Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    1 ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKDMGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGMPTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVARFCKNPGPAH 477
            ADPCVFRK+VD    +++V++ D+IL    D+   +  +A L + F  K++G+  ++ GC I RD +A  L+I Q  Y++ MVE+FDVK  S+IPAT G     K        E EE  ++P REA+G++MW +T +RPD++ AVRAV R    P   H
Sbjct:  850 ADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRH 1000          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133926.2408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE1.230e-3243.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE4.640e-3142.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.740e-3042.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.780e-3042.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.780e-3042.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.790e-3042.77Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE2.870e-3042.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE5.740e-3042.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.080e-2941.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE9_9PHAE5.270e-2941.51Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133926contigH-elongata_contig133926:1303..1779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score105.5
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog202698.XP_007378181.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.7543452-CDS-H-elongata_contig133926:1302..17791622929795.7543452-CDS-H-elongata_contig133926:1302..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133926 1303..1779 +
1691679160.6939573-CDS-H-elongata_contig133926:1302..17791691679160.6939573-CDS-H-elongata_contig133926:1302..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133926 1303..1779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133926.2408.1prot_H-elongata_contig133926.2408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133926 1303..1779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133926.2408.1

>prot_H-elongata_contig133926.2408.1 ID=prot_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
ADPCVFRKVVDGETEVVVVVHGDNILAHAKDKATMDRFVAELGQKFKLKD
MGDARYYMGCHITRDRKARELKIDQHLYVEIMVEKFDVKKGSKIPATSGM
PTLSKADEPRNPEEKEEMRKFPCREAVGALMWTATMTRPDIASAVRAVAR
FCKNPGPAH
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mRNA from alignment at H-elongata_contig133926:1303..1779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133926.2408.1 ID=mRNA_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig133926:1303..1779+ (Himanthalia elongata Himel1 dioecious)
GCGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGACGGAAGTGGT GGTGGTCGTGCACGGGGACAATATTCTTGCTCACGCCAAGGACAAAGCGA CTATGGATAGATTCGTGGCTGAGCTTGGACAAAAATTCAAATTGAAGGAT ATGGGTGACGCCAGGTACTACATGGGTTGTCACATTACTAGGGACCGCAA GGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAAATAATGGTGG AAAAGTTCGACGTCAAAAAGGGAAGCAAGATACCGGCAACGTCGGGGATG CCAACACTTTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGA AATGAGGAAGTTTCCATGCCGGGAAGCAGTGGGGGCGCTTATGTGGACGG CGACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGCTGTGGCCAGG TTCTGCAAAAACCCTGGGCCGGCGCAT
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Coding sequence (CDS) from alignment at H-elongata_contig133926:1303..1779+

>mRNA_H-elongata_contig133926.2408.1 ID=mRNA_H-elongata_contig133926.2408.1|Name=mRNA_H-elongata_contig133926.2408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig133926:1303..1779+ (Himanthalia elongata Himel1 dioecious)
GCGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGACGGAAGTGGT
GGTGGTCGTGCACGGGGACAATATTCTTGCTCACGCCAAGGACAAAGCGA
CTATGGATAGATTCGTGGCTGAGCTTGGACAAAAATTCAAATTGAAGGAT
ATGGGTGACGCCAGGTACTACATGGGTTGTCACATTACTAGGGACCGCAA
GGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAAATAATGGTGG
AAAAGTTCGACGTCAAAAAGGGAAGCAAGATACCGGCAACGTCGGGGATG
CCAACACTTTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGA
AATGAGGAAGTTTCCATGCCGGGAAGCAGTGGGGGCGCTTATGTGGACGG
CGACGATGACACGGCCGGACATTGCGAGCGCAGTACGCGCTGTGGCCAGG
TTCTGCAAAAACCCTGGGCCGGCGCATGCGGATCCGTGCGTGTTCCGTAA
GGTCGTTGACGGCGAGACGGAAGTGGTGGTGGTCGTGCACGGGGACAATA
TTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGTGGCTGAG
CTTGGACAAAAATTCAAATTGAAGGATATGGGTGACGCCAGGTACTACAT
GGGTTGTCACATTACTAGGGACCGCAAGGCGCGCGAGCTGAAGATCGACC
AACACTTGTACGTGGAAATAATGGTGGAAAAGTTCGACGTCAAAAAGGGA
AGCAAGATACCGGCAACGTCGGGGATGCCAACACTTTCAAAGGCGGACGA
GCCGCGGAACCCGGAGGAGAAGGAGGAAATGAGGAAGTTTCCATGCCGGG
AAGCAGTGGGGGCGCTTATGTGGACGGCGACGATGACACGGCCGGACATT
GCGAGCGCAGTACGCGCTGTGGCCAGGTTCTGCAAAAACCCTGGGCCGGC
GCAT
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