mRNA_H-elongata_contig133884.2406.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133884.2406.1
Unique NamemRNA_H-elongata_contig133884.2406.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A6H5L6B2_9PHAE (DHQ_synthase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6B2_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.100e-55
Identity = 93/104 (89.42%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADM TLKSLPDRELASGIAEVVKYGLI+D +FF WQE CME MAARD  VLAEAVERSC+NKA V
Sbjct:  204 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMGTLKSLPDRELASGIAEVVKYGLIKDSEFFRWQEGCMENMAARDAGVLAEAVERSCINKANV 307
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A7S2V3U2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3U2_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.330e-49
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTTLMAMVDS+VGGKT VNH LGKNMIGAFYQPQ VL D DTL SLPDRELASGIAEVVKYGLIRD DFF+WQE  M+ M ARDP+ LA A+ERSC NKA+V
Sbjct:  182 QVPTTLMAMVDSSVGGKTGVNHHLGKNMIGAFYQPQCVLIDTDTLNSLPDRELASGIAEVVKYGLIRDADFFKWQEDNMDGMLARDPSTLATAIERSCQNKADV 285
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A6T5P5V7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5P5V7_HETAK)

HSP 1 Score: 169 bits (427), Expect = 1.930e-48
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTTLMAMVDS+VGGKTAVNHPLGKNMIGAFYQPQAV+ D  +L SLPDRELASG++EV+KYGLIRD  FFEWQE+ ME++ ARDPA LA AV+RSC NKAEV
Sbjct:  218 QVPTTLMAMVDSSVGGKTAVNHPLGKNMIGAFYQPQAVVIDTASLNSLPDRELASGVSEVIKYGLIRDAPFFEWQEANMEQLLARDPAALAYAVKRSCENKAEV 321
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A6V7NRX7_ANACO (DHQ_synthase domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NRX7_ANACO)

HSP 1 Score: 164 bits (415), Expect = 2.250e-48
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            Q+PTTLMA VDS+VGGKT +NHPLGKN+IGAFYQPQ VL D DTL +LPDRELASGIAEVVKYGLIRD  FFEWQE  M+ + ARDP+ LA A++RSC NKAEV
Sbjct:   49 QIPTTLMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGIAEVVKYGLIRDAAFFEWQEKNMQALLARDPSALAYAIKRSCENKAEV 152
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A835Z318_9STRA (3-Dehydroquinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z318_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.750e-48
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAV+ADM TL++LPDRELASGIAEVVKYGLIRD  FFEWQE+ +  + ARD   L+EAV RSC NKA V
Sbjct:  136 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVIADMATLRTLPDRELASGIAEVVKYGLIRDAAFFEWQEARVGALRARDAETLSEAVRRSCENKAAV 239
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A7S4J2A1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J2A1_9STRA)

HSP 1 Score: 165 bits (417), Expect = 4.390e-48
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTT+MAMVDS+VGGKTAVNHPLGKNMIG+F+QP+ V  D DTLK+LPDREL SGIAEV+KYGLIRDPDFFEWQE+ ME +  RDP  L  A++RSC NKAEV
Sbjct:   96 QVPTTVMAMVDSSVGGKTAVNHPLGKNMIGSFHQPECVFVDTDTLKTLPDRELQSGIAEVIKYGLIRDPDFFEWQENNMEGLLKRDPDTLRYAIKRSCENKAEV 199
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: A0A522LYT2_9GAMM (3-dehydroquinate synthase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A522LYT2_9GAMM)

HSP 1 Score: 165 bits (418), Expect = 5.270e-48
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTTL++ VDS+VGGKT VNHPLGKNMIGAFYQP+AV+ D DTL +LPDREL++G+AEV+KYGLIRDP FF W E+ M+R+ ARDPA LAEA+ERSC NKAEV
Sbjct:  124 QVPTTLLSQVDSSVGGKTGVNHPLGKNMIGAFYQPRAVVIDTDTLNTLPDRELSAGLAEVIKYGLIRDPGFFAWLEAHMDRLLARDPAALAEAIERSCRNKAEV 227
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: I0Z480_COCSC (3-dehydroquinate synthase AroB n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z480_COCSC)

HSP 1 Score: 165 bits (418), Expect = 5.780e-48
Identity = 78/104 (75.00%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            QVPTT+MAMVDS+VGGKT VNHPLGKNMIGAFYQP+ VL D+DTL SLPDRELASGI+E++KYGLIRDP  FEW E+ MER+ ARD   ++ A+ERSC+NKAEV
Sbjct:  128 QVPTTVMAMVDSSVGGKTGVNHPLGKNMIGAFYQPKVVLVDVDTLNSLPDRELASGISEIIKYGLIRDPALFEWLEANMERLLARDAEAMSYAIERSCINKAEV 231
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BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: UPI00053C6F0D (3-dehydroquinate synthase, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6F0D)

HSP 1 Score: 167 bits (423), Expect = 5.830e-48
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            Q+PTT+MA VDS+VGGKT +NHPLGKNMIGAFYQPQ VL D DTL +LPDRELASG+AEV+KYGLIRD +FFEWQE  ME + ARDPA LA A++RSC NKAEV
Sbjct:  207 QIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLVDTDTLNTLPDRELASGVAEVIKYGLIRDAEFFEWQERNMEALLARDPAALAYAIKRSCENKAEV 310
[Close]
BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Match: B9SUG6_RICCO (3-dehydroquinate synthase, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SUG6_RICCO)

HSP 1 Score: 164 bits (415), Expect = 8.530e-48
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 QVPTTLMAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASGIAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV 312
            Q+PTT+MA VDS+VGGKT +NHPLGKN+IGAFYQPQ VL D DTL +LPDRELASG AEV+KYGLIRD +FFEWQE  M ++ ARDP+VLA A++RSC NKAEV
Sbjct:  207 QIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGFAEVIKYGLIRDAEFFEWQEKNMPKLMARDPSVLAYAIKRSCENKAEV 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133884.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6B2_9PHAE1.100e-5589.42DHQ_synthase domain-containing protein n=2 Tax=Ect... [more]
A0A7S2V3U2_9STRA9.330e-4980.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T5P5V7_HETAK1.930e-4879.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V7NRX7_ANACO2.250e-4875.96DHQ_synthase domain-containing protein n=1 Tax=Ana... [more]
A0A835Z318_9STRA3.750e-4880.773-Dehydroquinate synthase n=1 Tax=Tribonema minus ... [more]
A0A7S4J2A1_9STRA4.390e-4875.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A522LYT2_9GAMM5.270e-4875.003-dehydroquinate synthase n=1 Tax=Gammaproteobacte... [more]
I0Z480_COCSC5.780e-4875.003-dehydroquinate synthase AroB n=1 Tax=Coccomyxa s... [more]
UPI00053C6F0D5.830e-4875.963-dehydroquinate synthase, chloroplastic n=1 Tax=T... [more]
B9SUG6_RICCO8.530e-4874.043-dehydroquinate synthase, putative n=2 Tax=Ricinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133884contigH-elongata_contig133884:390..1069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue3.8e-42
Seed eggNOG ortholog2880.D8LEE6
KEGG rclassRC00847
KEGG koko:K01735
KEGG ReactionR03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0003674,GO:0003824,GO:0003856,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019632,GO:0019752,GO:0031410,GO:0031982,GO:0031984,GO:0032787,GO:0033587,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0071704,GO:0072330,GO:0097708,GO:0098791,GO:1901576,GO:1901615,GO:1901617
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC4.2.3.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description3-Dehydroquinate Synthase
Ec32 orthologEc-00_002010.1
Exons2
Model size312
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133884.2406.1prot_H-elongata_contig133884.2406.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133884 390..1051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.6138186-CDS-H-elongata_contig133884:389..5421622929795.6138186-CDS-H-elongata_contig133884:389..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133884 390..542 -
1691679160.6584535-CDS-H-elongata_contig133884:389..5421691679160.6584535-CDS-H-elongata_contig133884:389..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133884 390..542 -
1622929795.6287043-CDS-H-elongata_contig133884:910..10511622929795.6287043-CDS-H-elongata_contig133884:910..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133884 911..1051 -
1691679160.6714637-CDS-H-elongata_contig133884:910..10511691679160.6714637-CDS-H-elongata_contig133884:910..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133884 911..1051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.641434-UTR-H-elongata_contig133884:1051..10691622929795.641434-UTR-H-elongata_contig133884:1051..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133884 1052..1069 -
1691679160.6787302-UTR-H-elongata_contig133884:1051..10691691679160.6787302-UTR-H-elongata_contig133884:1051..1069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133884 1052..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133884.2406.1

>prot_H-elongata_contig133884.2406.1 ID=prot_H-elongata_contig133884.2406.1|Name=mRNA_H-elongata_contig133884.2406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MAMVDSAVGGKTAVNHPLGKNMIGAFYQPQAVLADMDTLKSLPDRELASG
IAEVVKYGLIRDPDFFEWQESCMERMAARDPAVLAEAVERSCVNKAEV
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mRNA from alignment at H-elongata_contig133884:390..1069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133884.2406.1 ID=mRNA_H-elongata_contig133884.2406.1|Name=mRNA_H-elongata_contig133884.2406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=680bp|location=Sequence derived from alignment at H-elongata_contig133884:390..1069- (Himanthalia elongata Himel1 dioecious)
CAGGTACCCACTACCCTTATGGCGATGGTCGATTCCGCGGTGGGCGGCAA
GACGGCGGTGAACCACCCCCTCGGCAAGAACATGATAGGGGCGTTCTATC
AGCCGCAGGCGGTTCTGGCGGACATGGACACACTGAAGAGCCTGCCCGAC
AGAGAGCTGGTGAGGATATCTCGATACTGTGCTGCAAACGATCCCAAGGT
CCTTGGCGTGCCTGCAATCACCTATCAAGGGGAGAAGCCCGTCGTGTCCC
GCGTTTGTTCGTGTATGTACAGTATATGATGTGTGTATGTGTGTGTATTT
ATTAAATTGTAGATAAACCGCGCAATCCGGCCCTGTTATCCTAGGCCTTC
TAGGCTACTCTCGCATTGATCCTCCCAATGGGGGATTCAATCAGTGTGCG
TGTGTGTGTGTGTGTGTGTGTGTGTGAGCGGGGTATCCTCAGTTTCGGTC
ATTTTTATTTTGCGTTGCATCTGGTCGACCGTGTCCTTTCGTGCTGTGAT
GTTACCCGCGCGCTGCTTGCGCACAAGGCATCGGGCATCGCAGAGGTCGT
GAAGTATGGCCTGATCAGGGACCCCGACTTCTTCGAGTGGCAGGAGAGCT
GCATGGAGAGGATGGCCGCGCGCGACCCGGCCGTGCTCGCCGAAGCCGTC
GAGCGGTCTTGCGTTAACAAGGCGGAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig133884:390..1069-

>mRNA_H-elongata_contig133884.2406.1 ID=mRNA_H-elongata_contig133884.2406.1|Name=mRNA_H-elongata_contig133884.2406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig133884:390..1069- (Himanthalia elongata Himel1 dioecious)
ATGGCGATGGTCGATTCCGCGGTGGGCGGCAAGACGGCGGTGAACCACCC
CCTCGGCAAGAACATGATAGGGGCGTTCTATCAGCCGCAGGCGGTTCTGG
CGGACATGGACACACTGAAGAGCCTGCCCGACAGAGAGCTGATGGCGATG
GTCGATTCCGCGGTGGGCGGCAAGACGGCGGTGAACCACCCCCTCGGCAA
GAACATGATAGGGGCGTTCTATCAGCCGCAGGCGGTTCTGGCGGACATGG
ACACACTGAAGAGCCTGCCCGACAGAGAGCTGGCATCGGGCATCGCAGAG
GTCGTGAAGTATGGCCTGATCAGGGACCCCGACTTCTTCGAGTGGCAGGA
GAGCTGCATGGAGAGGATGGCCGCGCGCGACCCGGCCGTGCTCGCCGAAG
CCGTCGAGCGGTCTTGCGTTAACAAGGCGGAGGTTGCATCGGGCATCGCA
GAGGTCGTGAAGTATGGCCTGATCAGGGACCCCGACTTCTTCGAGTGGCA
GGAGAGCTGCATGGAGAGGATGGCCGCGCGCGACCCGGCCGTGCTCGCCG
AAGCCGTCGAGCGGTCTTGCGTTAACAAGGCGGAGGTT
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