mRNA_H-elongata_contig133881.2405.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133881.2405.1
Unique NamemRNA_H-elongata_contig133881.2405.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133881.2405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133881contigH-elongata_contig133881:1597..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size156
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.4646573-UTR-H-elongata_contig133881:1596..16081622929795.4646573-UTR-H-elongata_contig133881:1596..1608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133881 1597..1608 +
1691679160.6429572-UTR-H-elongata_contig133881:1596..16081691679160.6429572-UTR-H-elongata_contig133881:1596..1608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133881 1597..1608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.5735803-CDS-H-elongata_contig133881:1608..17641622929795.5735803-CDS-H-elongata_contig133881:1608..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133881 1609..1764 +
1691679160.6501803-CDS-H-elongata_contig133881:1608..17641691679160.6501803-CDS-H-elongata_contig133881:1608..1764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133881 1609..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133881.2405.1prot_H-elongata_contig133881.2405.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133881 1609..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133881.2405.1

>prot_H-elongata_contig133881.2405.1 ID=prot_H-elongata_contig133881.2405.1|Name=mRNA_H-elongata_contig133881.2405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MSGYFKIMQSLAERVTDLLAVSFGVDPAIFQGCHGERLCALRLIHYSSQV
C*
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mRNA from alignment at H-elongata_contig133881:1597..1764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133881.2405.1 ID=mRNA_H-elongata_contig133881.2405.1|Name=mRNA_H-elongata_contig133881.2405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig133881:1597..1764+ (Himanthalia elongata Himel1 dioecious)
TGGAAGACGACAATGAGCGGCTACTTCAAAATAATGCAATCACTTGCGGA
GCGCGTTACGGATCTACTGGCAGTGAGCTTTGGTGTAGATCCGGCGATCT
TTCAGGGCTGCCATGGGGAGCGCTTGTGTGCACTCCGACTTATACACTAC
TCGTCCCAGGTGTGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig133881:1597..1764+

>mRNA_H-elongata_contig133881.2405.1 ID=mRNA_H-elongata_contig133881.2405.1|Name=mRNA_H-elongata_contig133881.2405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig133881:1597..1764+ (Himanthalia elongata Himel1 dioecious)
ATGAGCGGCTACTTCAAAATAATGCAATCACTTGCGGAGCGCGTTACGGA
TCTACTGGCAGTGAGCTTTGGTGTAGATCCGGCGATCTTTCAGGGCTGCC
ATGGGGAGCGCTTGTGTGCACTCCGACTTATACACTACTCGTCCCAGGTG
TGCTGAATGAGCGGCTACTTCAAAATAATGCAATCACTTGCGGAGCGCGT
TACGGATCTACTGGCAGTGAGCTTTGGTGTAGATCCGGCGATCTTTCAGG
GCTGCCATGGGGAGCGCTTGTGTGCACTCCGACTTATACACTACTCGTCC
CAGGTGTGCTGA
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