mRNA_H-elongata_contig133826.2402.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133826.2402.1
Unique NamemRNA_H-elongata_contig133826.2402.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A835Z597_9STRA (MyTH4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z597_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.230e-34
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKK 189
            YA+YCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKK
Sbjct:  251 YARYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKK 313
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: D7FVH2_ECTSI (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH2_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.190e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV
Sbjct: 1343 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 1406
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A6H5JBI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI4_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.190e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV
Sbjct: 1348 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 1411
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.110e-33
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YA+YCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLP+APDLNVKKV
Sbjct: 1382 YARYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPIAPDLNVKKV 1445
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A812WT93_SYMMI (KIN14I protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WT93_SYMMI)

HSP 1 Score: 103 bits (256), Expect = 1.710e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YAKYCL TLEGM+SS  + G VP++EEIQAYKERPPILATIELV+G ++TEDLPV PDLNV KV
Sbjct:   36 YAKYCLRTLEGMLSSGESSGFVPSVEEIQAYKERPPILATIELVDGQVITEDLPVTPDLNVGKV 99
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A7R9YD73_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD73_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.910e-22
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YAKYCL  LEGM++S  + G VP++EEIQAYKERPPILAT+ELV+G +LTEDLPV PDLNV+KV
Sbjct:  839 YAKYCLRALEGMLTSGAS-GFVPSVEEIQAYKERPPILATVELVDGMVLTEDLPVTPDLNVQKV 901
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A482S091_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S091_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 3.320e-19
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YA+YCL TLE M++S    G VP++EEI AYKERPPILATI LV+G ++TE+LP+ PDLNV KV
Sbjct:  211 YARYCLRTLEAMLNSGDGTGFVPSVEEILAYKERPPILATIYLVDGNVITENLPLTPDLNVAKV 274
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A7S2FEI0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FEI0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.380e-19
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YA+YCL +LEG+++S      +PT+EEIQAYKERPPILAT+ELV+G ++ E+LPV PDLNV+KV
Sbjct: 1476 YARYCLRSLEGILTSG-GSNYIPTVEEIQAYKERPPILATVELVDGNIVVEELPVTPDLNVQKV 1538
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A7S3HK87_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK87_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-18
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YA+YCL TLE +++S    G VP++EEI AYKERPPILATI LV+G ++TE+LP+ PDLNV KV
Sbjct:  305 YARYCLRTLEAILNSGDGTGFVPSVEEILAYKERPPILATIYLVDGNVITENLPLTPDLNVAKV 368
[Close]
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Match: A0A482UF54_9ARCH (MyTH4 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UF54_9ARCH)

HSP 1 Score: 86.7 bits (213), Expect = 2.950e-18
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLTEDLPVAPDLNVKKV 192
            YA+Y L  LEG+++S  + G +P++EE+QAYKERPPILATIELV+G  LTEDLP+ PDLNV KV
Sbjct:  324 YARYSLRRLEGILNSGPS-GFIPSVEELQAYKERPPILATIELVDGTPLTEDLPITPDLNVGKV 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133826.2402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835Z597_9STRA8.230e-3498.41MyTH4 domain-containing protein n=1 Tax=Tribonema ... [more]
D7FVH2_ECTSI1.190e-33100.00Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A6H5JBI4_9PHAE1.190e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPP0_9STRA4.110e-3396.88Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A812WT93_SYMMI1.710e-2476.56KIN14I protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7R9YD73_9STRA4.910e-2273.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A482S091_9ARCH3.320e-1965.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2FEI0_9STRA6.380e-1964.06Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3HK87_9STRA1.170e-1864.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482UF54_9ARCH2.950e-1865.63MyTH4 domain-containing protein (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133826contigH-elongata_contig133826:612..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7FVH2
Preferred nameMyo22
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-09_001070.1
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929795.2966402-CDS-H-elongata_contig133826:611..8181622929795.2966402-CDS-H-elongata_contig133826:611..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133826 612..818 +
1691679160.6085815-CDS-H-elongata_contig133826:611..8181691679160.6085815-CDS-H-elongata_contig133826:611..818Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133826 612..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133826.2402.1prot_H-elongata_contig133826.2402.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133826 612..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133826.2402.1

>prot_H-elongata_contig133826.2402.1 ID=prot_H-elongata_contig133826.2402.1|Name=mRNA_H-elongata_contig133826.2402.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
YAKYCLHTLEGMMSSRTNEGIVPTLEEIQAYKERPPILATIELVNGALLT
EDLPVAPDLNVKKVPPRV*
back to top

mRNA from alignment at H-elongata_contig133826:612..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133826.2402.1 ID=mRNA_H-elongata_contig133826.2402.1|Name=mRNA_H-elongata_contig133826.2402.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig133826:612..818+ (Himanthalia elongata Himel1 dioecious)
TACGCCAAGTACTGTCTCCACACCTTGGAAGGCATGATGTCTTCGAGAAC
GAACGAGGGTATCGTGCCCACCCTGGAGGAGATACAGGCGTACAAGGAGC
GCCCCCCGATTCTGGCCACGATCGAGCTCGTGAACGGAGCGCTCCTCACC
GAGGATCTCCCGGTCGCCCCGGACCTTAACGTGAAAAAGGTACCTCCGCG
TGTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig133826:612..818+

>mRNA_H-elongata_contig133826.2402.1 ID=mRNA_H-elongata_contig133826.2402.1|Name=mRNA_H-elongata_contig133826.2402.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig133826:612..818+ (Himanthalia elongata Himel1 dioecious)
TACGCCAAGTACTGTCTCCACACCTTGGAAGGCATGATGTCTTCGAGAAC
GAACGAGGGTATCGTGCCCACCCTGGAGGAGATACAGGCGTACAAGGAGC
GCCCCCCGATTCTGGCCACGATCGAGCTCGTGAACGGAGCGCTCCTCACC
GAGGATCTCCCGGTCGCCCCGGACCTTAACGTGAAAAAGGTACCTCCGCG
TGTGTGATACGCCAAGTACTGTCTCCACACCTTGGAAGGCATGATGTCTT
CGAGAACGAACGAGGGTATCGTGCCCACCCTGGAGGAGATACAGGCGTAC
AAGGAGCGCCCCCCGATTCTGGCCACGATCGAGCTCGTGAACGGAGCGCT
CCTCACCGAGGATCTCCCGGTCGCCCCGGACCTTAACGTGAAAAAGGTAC
CTCCGCGTGTGTGA
back to top