mRNA_H-elongata_contig13375.2395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13375.2395.1
Unique NamemRNA_H-elongata_contig13375.2395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: D7G0I3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I3_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 8.070e-86
Identity = 139/183 (75.96%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:   22 LASEYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEINPNDFNYAREPHPNERNKFSENIYRVGDTQLVEAVDLLEKRCPEAIVRNNDDGYFVVKVDALPAPVFWEVELYLRRRLGSKPGLTKKRIPTTYRPAPDSLARLSGRKR 570
            +ASEYPDYHQIV+TPMDLGTIQENI +  Y SLEACAKDVR VWTNA+LYNP +SVVAQ A  LSKVFEGMYN+INP DFNYAREP+ +ERNK S +IYRV D+QL EAV LLE+RCPEA+VR++++GYFVVKV+ALP+PVFWEVELYLR+RL ++P  TKK+IPTT+RP PDS+ARLSGRKR
Sbjct:    1 MASEYPDYHQIVSTPMDLGTIQENIRQNVYPSLEACAKDVRTVWTNAYLYNPAKSVVAQGARALSKVFEGMYNKINPADFNYAREPNVDERNKLSRDIYRVEDSQLEEAVQLLEQRCPEAVVRDDEEGYFVVKVEALPSPVFWEVELYLRKRLCNQPDRTKKKIPTTFRPPPDSMARLSGRKR 183
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A7S3JU45_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU45_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.910e-21
Identity = 55/161 (34.16%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:   40 DYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEINPND----FNYAREPHPNERNKFSENIYRVGDTQLVEAVDLLEKRCPEAIVRNNDDGYFVVKVDALPAPVFWEVELYLRRRLGSKPGLTKKR 510
            DY +++  PMDLGT+++ I    YAS+ ACA+D+R+VW+N   YN   S     A +LSK FE  + ++   D     +    P   E+ KFS  IY++   +L + V+ LE RCPEAI +  +D    + +DA+    F E++ +++  + +     KKR
Sbjct:   33 DYPKMIKKPMDLGTVKKKIEENEYASVHACAEDIRLVWSNCKKYNQDGSDFFNLAESLSKRFEDQFAKVKAEDPMIEDDTEHAPSLEEKTKFSHMIYKIKQEELGQLVEKLEDRCPEAIDKTPNDDELEINIDAIDPKTFRELDKFVKACIVNNQPKKKKR 193
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A2T7D4C9_9POAL (Uncharacterized protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7D4C9_9POAL)

HSP 1 Score: 77.8 bits (190), Expect = 4.040e-11
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    7 FNKPVLAS--EYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNE 243
            FN PV     +  DYH I+ +PMDLGT+++N+  GRY S EA A DVR+ + NA  YNPP+  V + A +L   FEG+Y E
Sbjct:  165 FNSPVDVEGLKLHDYHAIIRSPMDLGTVKQNLAAGRYPSHEAFANDVRLTFNNAVRYNPPDHHVHRYAGSLLATFEGLYRE 245
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A444WWU0_ARAHY (Bromo domain-containing protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444WWU0_ARAHY)

HSP 1 Score: 75.5 bits (184), Expect = 6.690e-11
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 IFNKPV--LASEYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEI 246
            +F+KPV  +A   PDY  I++ PMDLGTI+  + +  Y+S+E  A DVR+ ++NA  YNPP + V   A  LSKVFE  + ++
Sbjct:   99 VFSKPVDPVALNIPDYFTIISEPMDLGTIKSKLEKNIYSSIEEFATDVRLTFSNAMTYNPPNNDVHLMAKELSKVFEKKWKDL 181
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A3L6RGR8_PANMI (Transcription factor GTE7-like n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RGR8_PANMI)

HSP 1 Score: 77.0 bits (188), Expect = 7.170e-11
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    7 FNKPVLAS--EYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNE 243
            FN PV     +  DYH I+ +PMDLGT++ N+  GRY S EA A DVR+ ++NA  YNPP+  V + A +L   FEG+Y E
Sbjct:  209 FNSPVDVEGLKLHDYHAIIRSPMDLGTVKRNLAAGRYPSHEAFASDVRLTFSNAARYNPPDHHVHRYAGSLLATFEGLYRE 289
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A7S1V4M0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4M0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.010e-10
Identity = 51/189 (26.98%), Postives = 90/189 (47.62%), Query Frame = 1 
Query:    7 FNKPVLASEYP--DYHQIVTTPMDLGTIQENI---HRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEINPNDFNYAREPHPN-------------------------------ERNKFSENIYRVGDTQLVEAVDLLEKRCPEAIVRNNDDGYFVVKVDALPAPVFWEVELY 465
            F +PV   E    DY QI+ TPMDLGTI++ +   + G Y +L+ CA+DVR+VW+N   YN   S     A  LSK +E  Y ++   D+    +                                   E+  F++++Y++   +L   +  L+++CP+A+++++ +    + VD +   VF E++ Y
Sbjct:   28 FREPVAFKELGLFDYPQIIKTPMDLGTIKKKLKSRNNGDYKTLQQCAEDVRLVWSNCMTYNADGSDFFVLAQGLSKKWEDKYAKL-LQDYGIQADASGGSXXXXXXXXXXXXXXXXXXXXTTNEAIVSLEEKRAFAKSLYKLTKEELGRILIELDQKCPQALLKSSSEDEMEMNVDKITRLVFDELKKY 215
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A0D9X579_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9X579_9ORYZ)

HSP 1 Score: 75.9 bits (185), Expect = 1.470e-10
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    7 FNKPVLASEYP--DYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNE 243
            FN PV        DYH I+  PMDLGT++EN+  GRY S E  A DVR+ ++NA  YNPP+  V + A  L   FEG+Y E
Sbjct:  142 FNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEPFAADVRLTFSNALRYNPPDHHVHRYAGNLLATFEGLYKE 222
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: UPI0010FC6199 (transcription factor GTE12 isoform X2 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI0010FC6199)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 IFNKPV--LASEYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEI 246
            +F+KPV  +A   PDY  I++ PMDLGTI+  + +  Y+S+E  A DVR+ ++NA  YNPP + V   A  LSKVFE  + ++
Sbjct:   99 VFSKPVDPVALNIPDYFTIISEPMDLGTIKSKLEKNIYSSIEEFATDVRLTFSNAMTYNPPNNDVHLMAKELSKVFEKKWKDL 181
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A445BC81_ARAHY (Bromo domain-containing protein n=5 Tax=Arachis TaxID=3817 RepID=A0A445BC81_ARAHY)

HSP 1 Score: 75.5 bits (184), Expect = 2.770e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 IFNKPV--LASEYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEI 246
            +F+KPV  +A   PDY  I++ PMDLGTI+  + +  Y+S+E  A DVR+ ++NA  YNPP + V   A  LSKVFE  + ++
Sbjct:   99 VFSKPVDPVALNIPDYFTIISEPMDLGTIKSKLEKNIYSSIEEFATDVRLTFSNAMTYNPPNNDVHLMAKELSKVFEKKWKDL 181
[Close]
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Match: A0A445BC92_ARAHY (Bromo domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445BC92_ARAHY)

HSP 1 Score: 75.5 bits (184), Expect = 2.890e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 IFNKPV--LASEYPDYHQIVTTPMDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLSKVFEGMYNEI 246
            +F+KPV  +A   PDY  I++ PMDLGTI+  + +  Y+S+E  A DVR+ ++NA  YNPP + V   A  LSKVFE  + ++
Sbjct:   99 VFSKPVDPVALNIPDYFTIISEPMDLGTIKSKLEKNIYSSIEEFATDVRLTFSNAMTYNPPNNDVHLMAKELSKVFEKKWKDL 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13375.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0I3_ECTSI8.070e-8675.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3JU45_9STRA4.910e-2134.16Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A2T7D4C9_9POAL4.040e-1148.15Uncharacterized protein n=5 Tax=Panicum TaxID=4539... [more]
A0A444WWU0_ARAHY6.690e-1144.58Bromo domain-containing protein n=2 Tax=Arachis hy... [more]
A0A3L6RGR8_PANMI7.170e-1148.15Transcription factor GTE7-like n=1 Tax=Panicum mil... [more]
A0A7S1V4M0_9STRA1.010e-1026.98Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A0D9X579_9ORYZ1.470e-1048.15Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
UPI0010FC61991.700e-1044.58transcription factor GTE12 isoform X2 n=1 Tax=Arac... [more]
A0A445BC81_ARAHY2.770e-1044.58Bromo domain-containing protein n=5 Tax=Arachis Ta... [more]
A0A445BC92_ARAHY2.890e-1044.58Bromo domain-containing protein n=1 Tax=Arachis hy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13375contigH-elongata_contig13375:682..5127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue2.3e-67
Seed eggNOG ortholog2880.D7G0I3
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-20_002430.1
Exons5
Model size2777
Cds size1002
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.3711026-UTR-H-elongata_contig13375:681..7471622929794.3711026-UTR-H-elongata_contig13375:681..747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13375 682..747 +
1691679160.1491177-UTR-H-elongata_contig13375:681..7471691679160.1491177-UTR-H-elongata_contig13375:681..747Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13375 682..747 +
1622929794.468732-UTR-H-elongata_contig13375:3418..51271622929794.468732-UTR-H-elongata_contig13375:3418..5127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13375 3419..5127 +
1691679160.2219954-UTR-H-elongata_contig13375:3418..51271691679160.2219954-UTR-H-elongata_contig13375:3418..5127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13375 3419..5127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.3914287-CDS-H-elongata_contig13375:747..7681622929794.3914287-CDS-H-elongata_contig13375:747..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 748..768 +
1691679160.1595685-CDS-H-elongata_contig13375:747..7681691679160.1595685-CDS-H-elongata_contig13375:747..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 748..768 +
1622929794.407892-CDS-H-elongata_contig13375:1146..12361622929794.407892-CDS-H-elongata_contig13375:1146..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 1147..1236 +
1691679160.1734426-CDS-H-elongata_contig13375:1146..12361691679160.1734426-CDS-H-elongata_contig13375:1146..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 1147..1236 +
1622929794.4208262-CDS-H-elongata_contig13375:1875..19541622929794.4208262-CDS-H-elongata_contig13375:1875..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 1876..1954 +
1691679160.1832707-CDS-H-elongata_contig13375:1875..19541691679160.1832707-CDS-H-elongata_contig13375:1875..1954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 1876..1954 +
1622929794.433777-CDS-H-elongata_contig13375:2232..23661622929794.433777-CDS-H-elongata_contig13375:2232..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 2233..2366 +
1691679160.1910927-CDS-H-elongata_contig13375:2232..23661691679160.1910927-CDS-H-elongata_contig13375:2232..2366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 2233..2366 +
1622929794.4494843-CDS-H-elongata_contig13375:2740..34181622929794.4494843-CDS-H-elongata_contig13375:2740..3418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 2741..3418 +
1691679160.207912-CDS-H-elongata_contig13375:2740..34181691679160.207912-CDS-H-elongata_contig13375:2740..3418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13375 2741..3418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13375.2395.1prot_H-elongata_contig13375.2395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13375 748..3418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13375.2395.1

>prot_H-elongata_contig13375.2395.1 ID=prot_H-elongata_contig13375.2395.1|Name=mRNA_H-elongata_contig13375.2395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MDLGTIQENIHRGRYASLEACAKDVRIVWTNAFLYNPPESVVAQSAHTLS
KVFEGMYNEINPNDFNYAREPHPNERNKFSENIYRVGDTQLVEAVDLLEK
RCPEAIVRNNDDGYFVVKVDALPAPVFWEVELYLRRRLGSKPGLTKKRIP
TTYRPAPDSLARLSGRKRRSSSGSSGSASGGDNGESDVIGSNQRSFNETR
AFAQTIANGNKSGHQVDATSSTKGVFDFGTVEKRTNRTGAASGNHRPKAD
TGDNLRRARARDGEPMSPSRTRQATDGQEEGGMVDDVGGGVESVYGAAIP
DTSPEVDFMGWLEDPIDTSFREGGAGFGIGAAT*
back to top

mRNA from alignment at H-elongata_contig13375:682..5127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13375.2395.1 ID=mRNA_H-elongata_contig13375.2395.1|Name=mRNA_H-elongata_contig13375.2395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4446bp|location=Sequence derived from alignment at H-elongata_contig13375:682..5127+ (Himanthalia elongata Himel1 dioecious)
GCGATATTCAACAAGCCAGTCCTTGCGTCTGAGTATCCGGACTACCACCA
GATCGTCACTACCCCCATGGACCTCGGGACGATTCAGGTGACCGTGTCAG
CTGGCACGATCCCACCCACCCACCCACCCACCCCCGTTTGCGTGCAGCTA
TCCCCCTTTCTCGTGATCCCTTCTCGTTAACTTGATTGTGCGACAAGGTG
TTGGTAGAGATAAGGCTGCGGTACTTAAGCCGCTCTACCGAAAGTACCAA
TACAGAGAGGGCAGCGCATCTCGTGTAGGTGGCTGTTGAGCTCGACCTTG
ACAAAAACACGTGCATGGCTCCGGCATGCAGGGCGTTCGTCGAGGGCGTT
CCTTCGCGTGTTGATTACTCGCCTTAGACCCGCGTCCAAGGGATGATCGA
TGCGTACTCCAGCCTTGGCCGTGGCCGTCACGCGTGGACCTGACTGACCG
ATGCCCCCTCGTCAGGAGAACATTCACCGTGGGCGGTACGCATCGCTCGA
GGCTTGCGCGAAGGACGTGCGGATAGTGTGGACGAACGCCTTCTTGTACA
ATCCGGTAAGAGAGACAGAGAAAGCGGACTCGAACCGCACGCTGATCTCG
GGTGGATCAATGAGGCTCTTGGATGAGTGAGTGAGTGATCGTTATTTCCA
GGAATGTTGATTGGTAAATTCTAACCCGTATGAAGGTAGCGAGTGCGAAC
CCCAAGCCAGTAAGGTTGGCAGTCGCACGTCATCTACTGCGATCTCTGGT
TGGTAACAGCTTGAAATTGTCGGAAGTCACCAGCCGCCAGCCGCCACGGC
AAATGGAGAGCAAATTTCCTGAGTCAATCGGTCGCAGCGCACCTATGGCG
GTCGCACCCAGGCAAGGTGGATCATCTGTCAATCTTTTCTGGGGGGAAAT
TCTAGTTGTTGCAAGCATTTACGGCTGTCTCATTCCTTCAAAACACGGTG
TTATCCTGCTAATGTGAGGTATGCCACGCAGCGCTTCTCGCCGATCATAC
GCGTATGGAGCCCGTCGAGCCACGAGCGTGGAAGAATGCTTATTTATAGT
CCTTAGAACGTCGCTGAAGTCACTACGAATGTTGAAGCGCCTCGCTCGGT
TCCAGGCAAATACCGTCTGATGTAAGCACTACTGCATCCTTGCCTTGATT
GGTTTTTTTTTTTACGTTTGCGTGGCATGGAAACCCCATCAAAGCCGGAG
AGCGTCGTGGCCCAGAGCGCCCACACGCTCTCTAAAGTGTTCGAGGGGAT
GTACAACGAGATCAATCCCAACGGTGAGCGCTTCAACTGCCGCCGTTGCT
CGAGCATCTAAGCCCCGAGCCGCCTCCTTAACATACTGTATGCACTTCCT
ACACGGCTCCACCCTTGCGTAATGCCTTCCCGTAAACTATGAAACACAGT
ACCATACATGTTTTTGCCGCTTGTTTTTTCCTTCCTGCTCGAGATCATCC
CCCCTCTAATCCCACCTCCCCTTAACCCCTACCCCACTCCAAAAAAAACA
AATACGGTAAGAAACAAATACTAAATTAAAAAATAACATTTTGCCGTTCA
GATTTCAACTACGCACGCGAGCCCCATCCCAACGAGCGAAACAAATTCAG
CGAAAATATATACAGGGTGGGGGACACTCAGCTAGTGGAGGCGGTCGATC
TTTTGGAGAAAAGATGTCCAGAAGCAATCGTGAGGGTGAGAACGACTCGT
GAGCCAAGGTCGCGGGGTTCAAGTGTGATTCGAAATGCTCTGCGGAATAG
TTGATTTGCCAATGTGTGCAAAGAACAGGATCGTCCCTGTTTTGTGATAA
TTGTTGCGCTCATAGTTTTCTGGGTAGAGGAACCAATCCGATGTTCCCAG
TACAAGCAAATCATTAGTCAAGCTCTCTGAAATCTCACTCATTCACTTGT
GGATTGCGTGCGCCTTACGAAACGTGGAGTGAGGGAGGAGGAATCCGACC
AACCACGACTCTCCTGAACTGTCCCCGCCAATGCTGTCGATACGACCGCC
TTAAATCTATCTTTCATCTCGAATATTTATCATCCTTAACCTTGGTCCCT
CCTGGTTAGAACAACGACGATGGATACTTTGTGGTGAAGGTGGACGCCCT
TCCCGCTCCGGTATTCTGGGAGGTGGAGCTGTACCTGAGAAGGCGGCTGG
GAAGCAAGCCCGGCCTTACCAAGAAAAGGATCCCCACCACCTACCGCCCC
GCTCCAGACTCCTTGGCGAGGCTGAGCGGTCGCAAGCGCAGAAGCAGCAG
TGGTAGTAGCGGCAGCGCGTCCGGCGGAGATAACGGAGAAAGCGATGTAA
TCGGTTCAAACCAGCGATCGTTCAACGAAACACGAGCCTTTGCCCAGACG
ATCGCGAATGGCAACAAGAGCGGGCACCAAGTGGACGCGACTTCTTCAAC
CAAGGGCGTGTTTGACTTCGGCACCGTTGAGAAGCGGACCAATAGAACGG
GAGCAGCCAGTGGCAACCACAGGCCGAAGGCAGACACAGGTGATAATCTT
CGACGCGCGAGGGCGCGTGATGGCGAACCGATGTCGCCGTCGCGGACAAG
GCAGGCCACAGACGGCCAGGAAGAAGGCGGGATGGTTGACGACGTCGGAG
GAGGGGTCGAAAGCGTGTACGGCGCTGCTATTCCAGACACCTCCCCCGAG
GTGGATTTCATGGGATGGTTGGAGGATCCGATTGATACGTCTTTCCGAGA
AGGAGGGGCGGGCTTTGGGATCGGCGCGGCGACGTAACTACAAGACACCC
CGTGTAGTGATATTGAAAGAGCAAGGGAGACGAGTTCGACTCTCAAGCAT
TGGATTTTTTATGTTTACTTTCCTGGTCTTTCTAGCCTAGTTTAGCCTTC
AATATGCTCCCCACCAGCTGATGTTTACCCTCTAGCCTTTCATCCCCCCC
CCCCCCTCACACACACCGAAAAACGCATGCATCAATACATTGACTTCACA
CAGCACGTGCGAACGGACGCCATTTTGGGGTGGACCTTGAAACGACGACG
TTTCCAGGGCAGCTTTGACAGCGGTATCAATTCTTGTCGATACATTGGCC
GGAGGTCATTTTACGGTCAACCACCAATTTTGTACCGCACACTTAAGATG
GGCACCGTTTCTCGCAAATGCCCCCACCAACTGGACGAAGGCCTTTGAGG
CGCACCACCTTTCCTTTCTTATTTCCTGGATATATTTCGTGCTATATCGT
ATTTGGTGGCGTTGCGTGTGTGGCCGCTTATCAGGGGATGTTGCGGGGAG
ACATTCAAAATACACCGATTCACATCGAACTCTTTTCGGTAAAACATTTA
CGTTCCGTGATGTTTTCCCAGCGTTGTACTTCACTTCACCATCCTGAGTG
ATTTTTCCTCTGCTCTGATGATCGGTCCCACGAGCCAGCGAAGGGTAAGC
AGTAGGGTACTACTTAGGCTATGTTATAGAAGCTAACCTATCGGCATGTA
CTCAAGCGACACGAGAAGGCTGGCGTCGACCGAGATGTTAAATTACAACA
CACATGAAACTTGACTTGCGTATTTAGTGTGTACTACGTAGATCGACCTT
CAGCGCAAGCTTTCGGTATTCGCGTACCGCTGCTCACCACTGCATTGCCA
GTCCAAAAAAGAAAACAAATATACCTCGCGTAGGGCACATATTCGACACG
ACTTGGTCGCGATGACGCAACCGATGTTGTGCTATTTCCCGGAGTGGGTA
CGTTGGCAGTAGGAGATGACATCGAGGAGAGGTCTGATAAACAACCGGGT
TGGGGAGGGGGGGGATGAGAGCGGCATGATAAAAAGGCGGAGGAAAGAGT
GCGTTCTGCAATTGTCCCATGAATATTCCATGCACTTTCAGTATAATTGT
TGCATGCCGCGGCCGGAATTTTGTGACTCATTAGTTTATTGGAAAAGCTT
CAGTGCGGGACAATCGCCCCTGGTGTTTTCTAGGGATGGGGATAGAGAGG
CGTAGTGGATTGGGTGTTCAGCGACAGACGAGGTAGAACGCAAGCGGCAG
GTCAAGGGAAGACAAAATATTTTCAGCGGGTTTCCCTAGGGCGTGAGTCC
ACAATACGCCGCTCGGTTTACGTAGCGAAATTACTCGCGTGAAGGAGATT
TCGATTGGTGGATGTGTTTCGGCACCCTAGAGCTATACGTTACACAGTTG
GTGCGCCTGCTGCACCATGGAGGTGCTTGTTCGCATGTAAAATAATATTT
GTCGGAGAGGAGAAACGCGTATCACCTAAGGGTTTTCCTTTCCTGTTGAT
CTTCGCACAGGCCGGCGACAAAATCAGCTCTGAGGGACGCGAAGGTATCC
TTGTCGCAGTTGGATATATACTCGTTCTGCTTGGTCACATCAGGAAGACA
AAGGAAATGACAAAGTGAAGAGGTTTTTCTGTCTCGTGGTACACCGCACC
CTCTCTCAGGATTACCGGTTCTAAGATGGGCCCACATTAGTTCTTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13375:682..5127+

>mRNA_H-elongata_contig13375.2395.1 ID=mRNA_H-elongata_contig13375.2395.1|Name=mRNA_H-elongata_contig13375.2395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at H-elongata_contig13375:682..5127+ (Himanthalia elongata Himel1 dioecious)
ATGGACCTCGGGACGATTCAGATGGACCTCGGGACGATTCAGGAGAACAT
TCACCGTGGGCGGTACGCATCGCTCGAGGCTTGCGCGAAGGACGTGCGGA
TAGTGTGGACGAACGCCTTCTTGTACAATCCGGAGAACATTCACCGTGGG
CGGTACGCATCGCTCGAGGCTTGCGCGAAGGACGTGCGGATAGTGTGGAC
GAACGCCTTCTTGTACAATCCGCCGGAGAGCGTCGTGGCCCAGAGCGCCC
ACACGCTCTCTAAAGTGTTCGAGGGGATGTACAACGAGATCAATCCCAAC
GCCGGAGAGCGTCGTGGCCCAGAGCGCCCACACGCTCTCTAAAGTGTTCG
AGGGGATGTACAACGAGATCAATCCCAACGATTTCAACTACGCACGCGAG
CCCCATCCCAACGAGCGAAACAAATTCAGCGAAAATATATACAGGGTGGG
GGACACTCAGCTAGTGGAGGCGGTCGATCTTTTGGAGAAAAGATGTCCAG
AAGCAATCGTGAGGATTTCAACTACGCACGCGAGCCCCATCCCAACGAGC
GAAACAAATTCAGCGAAAATATATACAGGGTGGGGGACACTCAGCTAGTG
GAGGCGGTCGATCTTTTGGAGAAAAGATGTCCAGAAGCAATCGTGAGGAA
CAACGACGATGGATACTTTGTGGTGAAGGTGGACGCCCTTCCCGCTCCGG
TATTCTGGGAGGTGGAGCTGTACCTGAGAAGGCGGCTGGGAAGCAAGCCC
GGCCTTACCAAGAAAAGGATCCCCACCACCTACCGCCCCGCTCCAGACTC
CTTGGCGAGGCTGAGCGGTCGCAAGCGCAGAAGCAGCAGTGGTAGTAGCG
GCAGCGCGTCCGGCGGAGATAACGGAGAAAGCGATGTAATCGGTTCAAAC
CAGCGATCGTTCAACGAAACACGAGCCTTTGCCCAGACGATCGCGAATGG
CAACAAGAGCGGGCACCAAGTGGACGCGACTTCTTCAACCAAGGGCGTGT
TTGACTTCGGCACCGTTGAGAAGCGGACCAATAGAACGGGAGCAGCCAGT
GGCAACCACAGGCCGAAGGCAGACACAGGTGATAATCTTCGACGCGCGAG
GGCGCGTGATGGCGAACCGATGTCGCCGTCGCGGACAAGGCAGGCCACAG
ACGGCCAGGAAGAAGGCGGGATGGTTGACGACGTCGGAGGAGGGGTCGAA
AGCGTGTACGGCGCTGCTATTCCAGACACCTCCCCCGAGGTGGATTTCAT
GGGATGGTTGGAGGATCCGATTGATACGTCTTTCCGAGAAGGAGGGGCGG
GCTTTGGGATCGGCGCGGCGACGTAAAACAACGACGATGGATACTTTGTG
GTGAAGGTGGACGCCCTTCCCGCTCCGGTATTCTGGGAGGTGGAGCTGTA
CCTGAGAAGGCGGCTGGGAAGCAAGCCCGGCCTTACCAAGAAAAGGATCC
CCACCACCTACCGCCCCGCTCCAGACTCCTTGGCGAGGCTGAGCGGTCGC
AAGCGCAGAAGCAGCAGTGGTAGTAGCGGCAGCGCGTCCGGCGGAGATAA
CGGAGAAAGCGATGTAATCGGTTCAAACCAGCGATCGTTCAACGAAACAC
GAGCCTTTGCCCAGACGATCGCGAATGGCAACAAGAGCGGGCACCAAGTG
GACGCGACTTCTTCAACCAAGGGCGTGTTTGACTTCGGCACCGTTGAGAA
GCGGACCAATAGAACGGGAGCAGCCAGTGGCAACCACAGGCCGAAGGCAG
ACACAGGTGATAATCTTCGACGCGCGAGGGCGCGTGATGGCGAACCGATG
TCGCCGTCGCGGACAAGGCAGGCCACAGACGGCCAGGAAGAAGGCGGGAT
GGTTGACGACGTCGGAGGAGGGGTCGAAAGCGTGTACGGCGCTGCTATTC
CAGACACCTCCCCCGAGGTGGATTTCATGGGATGGTTGGAGGATCCGATT
GATACGTCTTTCCGAGAAGGAGGGGCGGGCTTTGGGATCGGCGCGGCGAC
GTAA
back to top