mRNA_H-elongata_contig13374.2394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13374.2394.1
Unique NamemRNA_H-elongata_contig13374.2394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13374.2394.1 vs. uniprot
Match: A0A6H5JES4_9PHAE (Misat_Tub_SegII domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JES4_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.350e-64
Identity = 152/299 (50.84%), Postives = 183/299 (61.20%), Query Frame = 1 
Query:    1 NGKTSPHMAVDPRNAYHTSAILGAAVDVATSPLRFSSTGLDEWTSTGGSCGSGRVMSPDDGGGGI----GRAHAPGGYGSMVLASMSAWIPFPNPDASAETLRGVLDFSPSLVGASGGGRVPHVARPAGGQTGTQNGMVSFGPFARRRE-TPRRGNG---VESEAPGSARTSFGNLHVFSRKMVARGLTCPRADQLAIIRQVLGTSCVGAGSPYAVSTPLPIPISYPLLFRASLGSRGEQLLPVSTGTRRED--QGNRDHKG----------ELRVMCDEISAVACVERSSALGSYIAQ 837
            N +TSP+MA+DP NAYHTSA+LGAA+DVATSP+RFSSTGLD W+S  G  G G V  P  GGGG     GR   PG    M LA++SAW+P P+PDASAETL  +L    +    +G    P +A  A       + MVS GP ARRR    RRG G   V   A G  R S     V+SRK+V RG T PR  QL  + +VLG S VG+G  Y+VSTPLPIPI+YPL+FR SLG RGE L+P +  +R  +   G    KG          ELRVMCD IS VAC ER S +GS+I+Q
Sbjct:  360 NAETSPYMAIDPSNAYHTSAVLGAAIDVATSPVRFSSTGLDAWSSGRGD-GVGGV--PMAGGGGAFGDGGRVPPPGA--DMTLATLSAWLPLPHPDASAETLARLLSEHATSSRDAGSSDDPSLAPSA-------SKMVSLGPVARRRRGNLRRGRGKLLVPPSAAGGERVS----RVYSRKIVLRGCTAPRDHQLHALEEVLGRSAVGSGCSYSVSTPLPIPITYPLIFRESLGVRGE-LMPSAGASRAAEWASGGASGKGGGGRGAITSGELRVMCDHISGVACTERDSRMGSFISQ 641
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BLAST of mRNA_H-elongata_contig13374.2394.1 vs. uniprot
Match: A0A835Z5A4_9STRA (Tubulin/FtsZ, GTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.400e-27
Identity = 107/330 (32.42%), Postives = 147/330 (44.55%), Query Frame = 1 
Query:   13 SPHMAVDPRNAYHTSAILGAAVDVATSPLRFSSTG----LDEWTSTGGSCGSGRVMSPDDGGGGIGRAHAPGGYG--SMVLASMSAWIPFPNPDASAETLRGVLD---FSPSLVGASGGGRVPHVARPAGGQTGTQNGMVSFGPFARRRETPRRGNGVESEAPGSARTSFGNLHVFSRKMVARGLTCPRADQLAIIRQVLGTSCVGAGSPYAVS-----TPLPIPISYPLLFRASLGSRGEQLLPVSTGTRREDQGNRDHKGELRVMCDEISAVACVERSSALGSYIAQVVE-GFDLRRGGVRLELEKNDIQRDDAIEIIESLNALAGSY 957
            SPH+A+D R  YHTSA+LGAA++ ATSP RFSS      +D W                     +  A A GG+G  +M  A ++   PF   D + + L  +LD       L         PHV   A G +G+ +   +  PF                             VFS  +VARGL      Q  ++   L  +  G G   A +     TPLPIP+S+PL+FR SL  RG ++ P  + +  +D          RV+  E +A+A VE S  L   +    E G D+R   V  ELE+N +QRDDA E  E+L A AG+Y
Sbjct:  355 SPHVALDARRPYHTSAVLGAALEAATSPFRFSSPAAPCRMDAW---------------------VNAALAHGGHGGANMKFAGLTLAFPFAERDGNEDALGALLDAGDLRDRLCWLGMPPPPPHVH--AAGSSGSAHAPAAL-PFT----------------------------VFSELLVARGLAPAAHLQSPLLSSALDKARQGGGXXXAAAVAAFRTPLPIPLSFPLVFRPSLDERGARVPPNHSSSGEDD----------RVLLGEAAALAGVECSGRLAPLLRGAAEAGLDVRSAAVLRELERNGLQRDDAAEAREALRAQAGAY 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13374.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JES4_9PHAE1.350e-6450.84Misat_Tub_SegII domain-containing protein n=2 Tax=... [more]
A0A835Z5A4_9STRA6.400e-2732.42Tubulin/FtsZ, GTPase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13374contigH-elongata_contig13374:388..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue3.9e-72
Seed eggNOG ortholog2880.D7FL30
Preferred nameMSTO1
KEGG rclassRC00443
KEGG koko:K01679,ko:K12396,ko:K17408
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04142,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04142,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
GOsGO:0000002,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005856,GO:0006276,GO:0006996,GO:0007005,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048311,GO:0051179,GO:0051225,GO:0051276,GO:0051640,GO:0051641,GO:0051646,GO:0070925,GO:0071840,GO:0090307,GO:0098588,GO:0098805,GO:0098813,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.mitochondrion organization
EggNOG OGsKOG2530@1,KOG2530@2759
EC4.2.1.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMisato Segment II tubulin-like domain
Ec32 orthologEc-05_006860.1
Exons4
Model size972
Cds size951
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13374.2394.1prot_H-elongata_contig13374.2394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13374 409..2251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.2410774-UTR-H-elongata_contig13374:387..4081622929794.2410774-UTR-H-elongata_contig13374:387..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13374 388..408 +
1691679160.1000302-UTR-H-elongata_contig13374:387..4081691679160.1000302-UTR-H-elongata_contig13374:387..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13374 388..408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929794.2592797-CDS-H-elongata_contig13374:408..6071622929794.2592797-CDS-H-elongata_contig13374:408..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 409..607 +
1691679160.112231-CDS-H-elongata_contig13374:408..6071691679160.112231-CDS-H-elongata_contig13374:408..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 409..607 +
1622929794.2788334-CDS-H-elongata_contig13374:944..13031622929794.2788334-CDS-H-elongata_contig13374:944..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 945..1303 +
1691679160.1219604-CDS-H-elongata_contig13374:944..13031691679160.1219604-CDS-H-elongata_contig13374:944..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 945..1303 +
1622929794.2950897-CDS-H-elongata_contig13374:1578..18361622929794.2950897-CDS-H-elongata_contig13374:1578..1836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 1579..1836 +
1691679160.1308875-CDS-H-elongata_contig13374:1578..18361691679160.1308875-CDS-H-elongata_contig13374:1578..1836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 1579..1836 +
1622929794.3161392-CDS-H-elongata_contig13374:2116..22511622929794.3161392-CDS-H-elongata_contig13374:2116..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 2117..2251 +
1691679160.1401737-CDS-H-elongata_contig13374:2116..22511691679160.1401737-CDS-H-elongata_contig13374:2116..2251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13374 2117..2251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13374.2394.1

>prot_H-elongata_contig13374.2394.1 ID=prot_H-elongata_contig13374.2394.1|Name=mRNA_H-elongata_contig13374.2394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MAVDPRNAYHTSAILGAAVDVATSPLRFSSTGLDEWTSTGGSCGSGRVMS
PDDGGGGIGRAHAPGGYGSMVLASMSAWIPFPNPDASAETLRGVLDFSPS
LVGASGGGRVPHVARPAGGQTGTQNGMVSFGPFARRRETPRRGNGVESEA
PGSARTSFGNLHVFSRKMVARGLTCPRADQLAIIRQVLGTSCVGAGSPYA
VSTPLPIPISYPLLFRASLGSRGEQLLPVSTGTRREDQGNRDHKGELRVM
CDEISAVACVERSSALGSYIAQVVEGFDLRRGGVRLELEKNDIQRDDAIE
IIESLNALAGSYGAGAD
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mRNA from alignment at H-elongata_contig13374:388..2251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13374.2394.1 ID=mRNA_H-elongata_contig13374.2394.1|Name=mRNA_H-elongata_contig13374.2394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1864bp|location=Sequence derived from alignment at H-elongata_contig13374:388..2251+ (Himanthalia elongata Himel1 dioecious)
AACGGAAAGACATCGCCCCACATGGCGGTTGACCCTCGAAACGCGTACCA
CACGAGCGCAATCCTGGGGGCGGCCGTGGATGTGGCAACATCGCCGCTCA
GGTTCTCTTCCACGGGACTGGATGAGTGGACGAGCACAGGAGGTAGTTGT
GGCAGCGGGAGGGTTATGAGCCCCGATGACGGCGGCGGCGGCATCGGTCG
AGCCCATGCGCCGGGGGGATGTTGGATACTGCTTTTTGTGAATGTACCGC
GGATCAGAGCGATTCTTTTCGTGACGTGGTCTCGTGGAAGGATGTAGTCT
GACCGCCTCTTTTACTGGCATTAGAAGGTCGATTACCATCGCAGCGGCCG
TCCGGGCACGTGTGCTTTTTCTCCCTGTATCATGAGTGTTGAGCTGAAAA
TATTAGGTTGAACAATTCTAATAGTGGCAAGCGCATACATGGATGGCGTT
AACATGTTTTGGTGAACACCTGCTCTCAGATCTTTCCTCTCTCTACCCGC
CACTTTCCACAACGGGCTCCGCGAAACCGAACGGCTGAAACAAAAAATAT
ACCGCAGACGGGAGCATGGTGCTGGCCTCTATGTCGGCATGGATTCCCTT
CCCAAACCCCGATGCCTCCGCGGAGACGCTACGAGGAGTGCTCGATTTTT
CCCCTTCGCTCGTGGGCGCTAGCGGCGGCGGGCGCGTCCCTCACGTTGCA
CGGCCTGCGGGAGGGCAAACGGGGACGCAGAATGGTATGGTGTCCTTTGG
TCCATTCGCCAGGCGTCGGGAAACGCCGCGTCGGGGAAACGGGGTTGAAT
CGGAAGCGCCGGGATCAGCAAGGACATCATTTGGTAACCTCCACGTGTTT
TCTCGGAAGATGGTGGCGAGGGGACTTACTTGCCCTCGCGCCGATCAGCT
TGCCATTATTAGACAGGTAAGAGTTTGATGATGTTTTTCTATAACATACT
ATCATGTAGTATATTTTTGCCGCTCTTCCCTACACGAAGGTTCTCTATCC
TTGCGTTGGTCAAACCGTCCTCAAGCATCTCCGAGGTACAGCTCGAGCCC
GTTTGGGCATAATAATCGTAGAATCGTCGGTGATGTTTTTTTGAACCTGT
TGCGCTTGATCTTAAACGTGTGAATTCAACGTGTTACGTCGACCTGCCGT
GACGCAAGATTAACAAGCCGTACCGACGCTGTAATGCTCAGGTCTTGGGA
ACGTCCTGTGTGGGTGCTGGTTCACCGTACGCGGTGTCCACCCCATTGCC
GATCCCGATCAGCTACCCCTTGTTGTTTCGGGCGTCTCTGGGGTCGAGAG
GGGAGCAGCTGCTTCCGGTGTCAACGGGGACGAGAAGGGAAGATCAGGGG
AATCGAGATCATAAGGGAGAGCTGAGGGTTATGTGTGATGAGATTTCCGC
AGTAGCGTGCGTTGAACGAAGCTCGGCATTGGGAAGTTATATCGCGCAGG
TATGTGCCGGGTAGAATGTTCAGTCGCTCGGCTGAATGTACTCATTCAAT
CTCATCACCCCAGCGCGCGTCGACGCTGTGCTCGGGGTTGAAGAACCCGA
CGGGAAATGTATGTTACTATAAGGCAGTTAAGCGGCCAAATCGAAGAAAA
CATATTTTTCCAAGCCCACCGACGCAATTTGTCACATTTTGCCCCCCTCC
CTTCTCATAATGGAGAAGAGGCTTACCATCATTTGCCTAACGCCTAATAT
CGCAACGCCAACACTGAATAATTGAACAGGTCGTGGAAGGTTTTGACCTG
AGGCGAGGTGGGGTGCGGCTGGAGCTGGAAAAGAATGACATCCAACGAGA
TGACGCCATAGAAATTATCGAGAGCCTAAATGCCCTGGCTGGGAGCTACG
GAGCCGGCGCGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig13374:388..2251+

>mRNA_H-elongata_contig13374.2394.1 ID=mRNA_H-elongata_contig13374.2394.1|Name=mRNA_H-elongata_contig13374.2394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1902bp|location=Sequence derived from alignment at H-elongata_contig13374:388..2251+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTTGACCCTCGAAACGCGTACCACACGAGCGCAATCCTGGGGGC
GGCCGTGGATGTGGCAACATCGCCGCTCAGGTTCTCTTCCACGGGACTGG
ATGAGTGGACGAGCACAGGAGGTAGTTGTGGCAGCGGGAGGGTTATGAGC
CCCGATGACGGCGGCGGCGGCATCGGTCGAGCCCATGCGCCGGGGGGATA
TGGCGGTTGACCCTCGAAACGCGTACCACACGAGCGCAATCCTGGGGGCG
GCCGTGGATGTGGCAACATCGCCGCTCAGGTTCTCTTCCACGGGACTGGA
TGAGTGGACGAGCACAGGAGGTAGTTGTGGCAGCGGGAGGGTTATGAGCC
CCGATGACGGCGGCGGCGGCATCGGTCGAGCCCATGCGCCGGGGGGATAC
GGGAGCATGGTGCTGGCCTCTATGTCGGCATGGATTCCCTTCCCAAACCC
CGATGCCTCCGCGGAGACGCTACGAGGAGTGCTCGATTTTTCCCCTTCGC
TCGTGGGCGCTAGCGGCGGCGGGCGCGTCCCTCACGTTGCACGGCCTGCG
GGAGGGCAAACGGGGACGCAGAATGGTATGGTGTCCTTTGGTCCATTCGC
CAGGCGTCGGGAAACGCCGCGTCGGGGAAACGGGGTTGAATCGGAAGCGC
CGGGATCAGCAAGGACATCATTTGGTAACCTCCACGTGTTTTCTCGGAAG
ATGGTGGCGAGGGGACTTACTTGCCCTCGCGCCGATCAGCTTGCCATTAT
TAGACAGACGGGAGCATGGTGCTGGCCTCTATGTCGGCATGGATTCCCTT
CCCAAACCCCGATGCCTCCGCGGAGACGCTACGAGGAGTGCTCGATTTTT
CCCCTTCGCTCGTGGGCGCTAGCGGCGGCGGGCGCGTCCCTCACGTTGCA
CGGCCTGCGGGAGGGCAAACGGGGACGCAGAATGGTATGGTGTCCTTTGG
TCCATTCGCCAGGCGTCGGGAAACGCCGCGTCGGGGAAACGGGGTTGAAT
CGGAAGCGCCGGGATCAGCAAGGACATCATTTGGTAACCTCCACGTGTTT
TCTCGGAAGATGGTGGCGAGGGGACTTACTTGCCCTCGCGCCGATCAGCT
TGCCATTATTAGACAGGTCTTGGGAACGTCCTGTGTGGGTGCTGGTTCAC
CGTACGCGGTGTCCACCCCATTGCCGATCCCGATCAGCTACCCCTTGTTG
TTTCGGGCGTCTCTGGGGTCGAGAGGGGAGCAGCTGCTTCCGGTGTCAAC
GGGGACGAGAAGGGAAGATCAGGGGAATCGAGATCATAAGGGAGAGCTGA
GGGTTATGTGTGATGAGATTTCCGCAGTAGCGTGCGTTGAACGAAGCTCG
GCATTGGGAAGTTATATCGCGCAGGTCTTGGGAACGTCCTGTGTGGGTGC
TGGTTCACCGTACGCGGTGTCCACCCCATTGCCGATCCCGATCAGCTACC
CCTTGTTGTTTCGGGCGTCTCTGGGGTCGAGAGGGGAGCAGCTGCTTCCG
GTGTCAACGGGGACGAGAAGGGAAGATCAGGGGAATCGAGATCATAAGGG
AGAGCTGAGGGTTATGTGTGATGAGATTTCCGCAGTAGCGTGCGTTGAAC
GAAGCTCGGCATTGGGAAGTTATATCGCGCAGGTCGTGGAAGGTTTTGAC
CTGAGGCGAGGTGGGGTGCGGCTGGAGCTGGAAAAGAATGACATCCAACG
AGATGACGCCATAGAAATTATCGAGAGCCTAAATGCCCTGGCTGGGAGCT
ACGGAGCCGGCGCGGATGTCGTGGAAGGTTTTGACCTGAGGCGAGGTGGG
GTGCGGCTGGAGCTGGAAAAGAATGACATCCAACGAGATGACGCCATAGA
AATTATCGAGAGCCTAAATGCCCTGGCTGGGAGCTACGGAGCCGGCGCGG
AT
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