mRNA_H-elongata_contig13363.2389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13363.2389.1
Unique NamemRNA_H-elongata_contig13363.2389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A6H5KGJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.780e-46
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    4 GKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPFDE----EDEDEI 285
            GK+SVEG+ V QRCEVQPG RRGVVE++GE EGL+AGYWVGVRFDEPVGRGDGTV+G+  FEC KGFGGFVRG+NV  GDFPERPFDE    EDEDEI
Sbjct:  181 GKDSVEGIAVEQRCEVQPGGRRGVVEYVGEVEGLQAGYWVGVRFDEPVGRGDGTVRGKRLFECQKGFGGFVRGKNVTSGDFPERPFDELDDDEDEDEI 278
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A7S2W9K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9K5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.610e-38
Identity = 67/96 (69.79%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    4 GKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGL--KAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPFDEEDEDEI 285
            G E+VEG+K+G RCEV PGARRG V F+GE EGL  K G+WVGV FDEPVG+ DGTVKG+  FEC  GFGGF+RGRN+ VGDFPE   D EDEDEI
Sbjct:  198 GPETVEGIKIGDRCEVMPGARRGTVAFVGEVEGLGSKGGHWVGVTFDEPVGKSDGTVKGQTVFECPPGFGGFIRGRNLTVGDFPEEDLDLEDEDEI 293
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A7S2HN54_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HN54_9STRA)

HSP 1 Score: 126 bits (316), Expect = 6.790e-34
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:   10 ESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPFDEEDEDEI 285
            ESV G++VG RCEV PGARRG + ++GE  GL+ G+WVGVRFDEP+G+GDGT KG  +FEC   FG FVRG+NV +GDFPE  FD++ EDEI
Sbjct:  172 ESVAGLEVGGRCEVMPGARRGEIAYIGE-RGLEKGFWVGVRFDEPMGKGDGTSKGTRYFECEPSFGSFVRGKNVTMGDFPEEGFDDDSEDEI 262
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A7R9UBU7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBU7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.110e-33
Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 ESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPF-DEEDEDEI 285
            E ++G+++GQRCEV PG RRGV+E+LG+ +GL  GYW GVRFDEPVG+GDGTVKG+  F+C   +GGF+R RNV  GDFPER   ++ DEDE+
Sbjct:  176 ECMKGLELGQRCEVDPGGRRGVLEYLGKVDGLADGYWAGVRFDEPVGKGDGTVKGQRIFDCEARYGGFIRPRNVRCGDFPERDLLEDSDEDEL 268
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A835ZAK6_9STRA (Putative tubulin-specific chaperone B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK6_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.070e-32
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 PGKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPF-DEED--EDEI 285
            PG ESVEGMKVG RCEV PG RRG V FLGE EG+  GYWVGVRFDEPVGRG+GTVKG+  F   +    F+R +NVAVGD+PE+   DE D  EDEI
Sbjct:  180 PGPESVEGMKVGDRCEVSPGGRRGAVMFLGEVEGMAPGYWVGVRFDEPVGRGNGTVKGKQIFVTEEKHASFIRPKNVAVGDYPEKDLLDELDDSEDEI 277
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A8K1FRW2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRW2_PYTOL)

HSP 1 Score: 122 bits (305), Expect = 3.550e-32
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 PGKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFP-ERPFDEEDED 279
            PG E+VE M+VG RCEVQPG RRG V+F+GE   + AGYWVGV FDEPVG+G GTVKG+ +F C   +GGF+R  NVAVG+FP E PF + D++
Sbjct:  175 PGPETVEHMRVGDRCEVQPGGRRGQVQFIGEVPEIAAGYWVGVLFDEPVGKGTGTVKGKVYFPCEPKYGGFIRPHNVAVGEFPPEDPFADSDDE 268
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A6A3ZRF9_9STRA (CAP-Gly domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZRF9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.540e-31
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 PGKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPER-PF---DEEDEDEI 285
            PG ESV  MKVG RCEVQPG RRG V++LGE   +  GYWVGV+FDEPVG+G+G+VKG  +F+C   FGGFVR  NVAVGDFP   PF    ++D+DE+
Sbjct:  175 PGPESVADMKVGDRCEVQPGGRRGQVQYLGEIPEIAPGYWVGVQFDEPVGKGNGSVKGTTYFKCELKFGGFVRPHNVAVGDFPALDPFADLSDDDDDEL 273
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A7S2D093_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D093_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.900e-31
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    4 GKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAG-YWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPERPFDEEDEDE 282
            G E+V GM+VG RCE QPGARRG + ++GE  GL  G +W+GVRFDEPVGR +G VKG   FEC + +GGF+RG+NV VGDFPE   D ED DE
Sbjct:  197 GPETVVGMEVGMRCECQPGARRGEIAYVGEVAGLSGGGHWLGVRFDEPVGRSNGVVKGETIFECMERYGGFLRGKNVTVGDFPEAELDLEDTDE 290
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: H3GH02_PHYRM (CAP-Gly domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3GH02_PHYRM)

HSP 1 Score: 118 bits (295), Expect = 8.830e-31
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 PGKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPER-PF---DEEDEDEI 285
            PG E+V  MKVG RCEVQPG RRG V++LGE   +  GYWVGV+FDEPVG+G+G+VKG  +F+C + +GGFVR  NVAVGDFP   PF    ++D+DE+
Sbjct:  161 PGPETVADMKVGDRCEVQPGGRRGQVQYLGEIPEIAPGYWVGVQFDEPVGKGNGSVKGATYFKCEQKYGGFVRPPNVAVGDFPVLDPFADLSDDDDDEL 259
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BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Match: A0A482S1V0_9ARCH (CAP-Gly domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1V0_9ARCH)

HSP 1 Score: 118 bits (295), Expect = 9.240e-31
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 PGKESVEGMKVGQRCEVQPGARRGVVEFLGEAEGLKAG-YWVGVRFDEPVGRGDGTVKGRCFFECGKGFGGFVRGRNVAVGDFPER 255
            PG ESVEG+KVG RCEV PGARRG V ++GE + + AG +WVGV FDEPVG  DGTVKG   F+C  G+G F+ G+N+ VGDFPER
Sbjct:  161 PGPESVEGIKVGDRCEVMPGARRGTVRYVGEIDQISAGGHWVGVHFDEPVGHNDGTVKGVKIFDCLAGYGAFIHGKNIQVGDFPER 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13363.2389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGJ0_9PHAE4.780e-4678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2W9K5_9STRA1.610e-3869.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HN54_9STRA6.790e-3464.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UBU7_9STRA3.110e-3361.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835ZAK6_9STRA1.070e-3266.33Putative tubulin-specific chaperone B n=1 Tax=Trib... [more]
A0A8K1FRW2_PYTOL3.550e-3261.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3ZRF9_9STRA1.540e-3161.62CAP-Gly domain-containing protein n=2 Tax=Phytopht... [more]
A0A7S2D093_9STRA4.900e-3161.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
H3GH02_PHYRM8.830e-3159.60CAP-Gly domain-containing protein n=14 Tax=Phytoph... [more]
A0A482S1V0_9ARCH9.240e-3163.95CAP-Gly domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13363contigH-elongata_contig13363:6974..7870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog42099.EPrPV00000017592
Preferred nameTBCB
KEGG koko:K10423,ko:K17262
GOsGO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009798,GO:0009987,GO:0009994,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
EggNOG free text desc.Tubulin-specific chaperone B. Source PGD
EggNOG OGs1MAXE@121069,KOG3206@1,KOG3206@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionalpha-tubulin folding cofactor
Ec32 orthologEc-07_005160.1
Exons2
Model size288
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13363.2389.1prot_H-elongata_contig13363.2389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13363 6974..7846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929793.8720126-CDS-H-elongata_contig13363:6973..71531622929793.8720126-CDS-H-elongata_contig13363:6973..7153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13363 6974..7153 -
1691679159.979526-CDS-H-elongata_contig13363:6973..71531691679159.979526-CDS-H-elongata_contig13363:6973..7153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13363 6974..7153 -
1622929793.8850317-CDS-H-elongata_contig13363:7762..78461622929793.8850317-CDS-H-elongata_contig13363:7762..7846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13363 7763..7846 -
1691679159.9907758-CDS-H-elongata_contig13363:7762..78461691679159.9907758-CDS-H-elongata_contig13363:7762..7846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13363 7763..7846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929793.9072852-UTR-H-elongata_contig13363:7846..78701622929793.9072852-UTR-H-elongata_contig13363:7846..7870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13363 7847..7870 -
1691679159.9993088-UTR-H-elongata_contig13363:7846..78701691679159.9993088-UTR-H-elongata_contig13363:7846..7870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13363 7847..7870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13363.2389.1

>prot_H-elongata_contig13363.2389.1 ID=prot_H-elongata_contig13363.2389.1|Name=mRNA_H-elongata_contig13363.2389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MKVGQRCEVQPGARRGVVEFLGEAEGLKAGYWVGVRFDEPVGRGDGTVKG
RCFFECGKGFGGFVRGRNVAVGDFPERPFDEEDEDEI*
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mRNA from alignment at H-elongata_contig13363:6974..7870-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13363.2389.1 ID=mRNA_H-elongata_contig13363.2389.1|Name=mRNA_H-elongata_contig13363.2389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig13363:6974..7870- (Himanthalia elongata Himel1 dioecious)
CCAGGGAAAGAGAGCGTGGAAGGTATGAAGGTCGGGCAGCGTTGCGAGGT
GCAGCCGGGCGCAAGGAGAGGAGTCGTGGAGTTCTTGGGAGAGGCGGAAG
GATTAAAGGTGAGAGGGGATTGGGAGAAGGAATGTATAATAGTTTCCGTC
AAAGTTCGTTTTTTATCAATATTAGTGTGCACGAGGCATGGGGTGCTGGT
TTGTTGTGTGGATATAGTGTAGCGCATCGACAGGCGTTGCGTGTGGCCGT
TCGCAGTCTTGTCAGTGGTTGGCAGTCAAGTTGGCGGGTGGAACGTCAAA
AGCTCAAATAGCATTTGCCCCATTTTTTAACGTATATTATTGTTGTAGAA
TTTGTTCGCGTCGCTGTCGTCATTCAACACTACACTACACTGTACAGTAA
CGCTATGAGTTTTGGCCGTTCCTTCTCATTAACGAAGTTCGGCGAACGCC
AAACTGCCATCGCTGCTGCAGCGAACGCCTTTTTGACAAGCAAACACCAA
GACCGCCCACCGTCCGCAGTGTCGGCCGTCATTCCGCACGTATTTTCACA
CACAAATAACATTTTTTTCTCTCCCGCGTGAAACGACTCGCGCCCACGCC
CTGTTACATAAAACAATCCTCGAGGCGACGTGAAACCCGCAACTCACGCA
CGCGCGCGCGCACACATACTTGATTTACGCTGCTATACTGTGACTCACCG
GCGACATCCGAGCACAGGCCGGATACTGGGTCGGGGTCCGCTTCGACGAG
CCGGTTGGCCGGGGCGACGGGACGGTGAAAGGGCGGTGTTTCTTCGAGTG
CGGCAAGGGATTCGGCGGATTCGTGCGCGGGAGAAACGTGGCGGTCGGGG
ATTTCCCGGAGAGACCTTTCGACGAGGAAGACGAGGATGAAATCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13363:6974..7870-

>mRNA_H-elongata_contig13363.2389.1 ID=mRNA_H-elongata_contig13363.2389.1|Name=mRNA_H-elongata_contig13363.2389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig13363:6974..7870- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCGGGCAGCGTTGCGAGGTGCAGCCGGGCGCAAGGAGAGGAGT
CGTGGAGTTCTTGGGAGAGGCGGAAGGATTAAAGATGAAGGTCGGGCAGC
GTTGCGAGGTGCAGCCGGGCGCAAGGAGAGGAGTCGTGGAGTTCTTGGGA
GAGGCGGAAGGATTAAAGGCCGGATACTGGGTCGGGGTCCGCTTCGACGA
GCCGGTTGGCCGGGGCGACGGGACGGTGAAAGGGCGGTGTTTCTTCGAGT
GCGGCAAGGGATTCGGCGGATTCGTGCGCGGGAGAAACGTGGCGGTCGGG
GATTTCCCGGAGAGACCTTTCGACGAGGAAGACGAGGATGAAATCTAGGC
CGGATACTGGGTCGGGGTCCGCTTCGACGAGCCGGTTGGCCGGGGCGACG
GGACGGTGAAAGGGCGGTGTTTCTTCGAGTGCGGCAAGGGATTCGGCGGA
TTCGTGCGCGGGAGAAACGTGGCGGTCGGGGATTTCCCGGAGAGACCTTT
CGACGAGGAAGACGAGGATGAAATCTAG
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