mRNA_H-elongata_contig133537.2381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133537.2381.1
Unique NamemRNA_H-elongata_contig133537.2381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: D7FLS0_ECTSI (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.400e-19
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHV 168
            T ++AGL+AE+LE++ALL+GR+ILVDGSMR+G+WYA HV  LRRRFPRLRVAIIHV
Sbjct:  269 THKEAGLLAELLEETALLQGRNILVDGSMRNGEWYAEHVGDLRRRFPRLRVAIIHV 324
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A6H5KYQ7_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-17
Identity = 38/56 (67.86%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHV 168
            T ++AGL+ E+LE++ALL+GR+ILV+GSMR+G+WYA H+   RRRFPRLRVAIIHV
Sbjct:  267 THKEAGLLGELLEETALLQGRNILVEGSMRNGEWYAEHIRDRRRRFPRLRVAIIHV 322
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S1ZKL5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZKL5_TRICV)

HSP 1 Score: 68.9 bits (167), Expect = 1.870e-12
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG +AEIL  +AL +GR++LVDGS+RD  WYA H   LR  +PR+R+AI+HV+
Sbjct:  214 TRKEAGYVAEILAGAALRDGRNVLVDGSLRDRAWYARHFEELRGEYPRVRIAILHVT 270
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S1BFA9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFA9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG + EIL Q+AL  G+++LVDGS+RD DWY  + A LR  +P LR+AI+HV+
Sbjct:  137 TRKEAGFICEILTQAALQSGKNVLVDGSLRDSDWYIQYFAQLRADYPVLRLAILHVT 193
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S4QXS6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXS6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.260e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG MAEIL  + L  G++++VDGS+RD DWY ++ A LRR +  +R+AI+H+ 
Sbjct:   67 TRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHID 123
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S1BF23_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF23_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.450e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG + EIL Q+AL  G+++LVDGS+RD DWY  + A LR  +P LR+AI+HV+
Sbjct:  317 TRKEAGFICEILTQAALQSGKNVLVDGSLRDSDWYIQYFAQLRADYPVLRLAILHVT 373
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A6V2D5C6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D5C6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG MAEIL  + L  G++++VDGS+RD DWY ++ A LRR +  +R+AI+H+ 
Sbjct:  160 TRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHID 216
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S4QXP5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXP5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.450e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG MAEIL  + L  G++++VDGS+RD DWY ++ A LRR +  +R+AI+H+ 
Sbjct:  160 TRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHID 216
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S4R0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R0E2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.520e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG MAEIL  + L  G++++VDGS+RD DWY ++ A LRR +  +R+AI+H+ 
Sbjct:   67 TRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHID 123
[Close]
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Match: A0A7S4QXS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXS9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.810e-11
Identity = 27/57 (47.37%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 TVRQAGLMAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS 171
            T ++AG MAEIL  + L  G++++VDGS+RD DWY ++ A LRR +  +R+AI+H+ 
Sbjct:  160 TRKEAGYMAEILTLAGLQAGKNVMVDGSLRDSDWYQIYFAQLRREYDGIRIAILHID 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133537.2381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS0_ECTSI1.400e-1975.00Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KYQ7_9PHAE2.100e-1767.86Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S1ZKL5_TRICV1.870e-1254.39Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1BFA9_9STRA1.170e-1152.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4QXS6_9STRA1.260e-1147.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BF23_9STRA1.450e-1152.63Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6V2D5C6_9STRA1.990e-1147.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QXP5_9STRA3.450e-1147.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4R0E2_9STRA3.520e-1147.37Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4QXS9_9STRA4.810e-1147.37Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133537contigH-elongata_contig133537:1430..1600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.5e-14
Seed eggNOG ortholog2880.D7FLS0
EggNOG free text desc.Zeta toxin
EggNOG OGs2BIBQ@1,2S1DY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.3000364-UTR-H-elongata_contig133537:1429..14501622929792.3000364-UTR-H-elongata_contig133537:1429..1450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133537 1430..1450 +
1691679159.4917114-UTR-H-elongata_contig133537:1429..14501691679159.4917114-UTR-H-elongata_contig133537:1429..1450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig133537 1430..1450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929792.3285594-CDS-H-elongata_contig133537:1450..16001622929792.3285594-CDS-H-elongata_contig133537:1450..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133537 1451..1600 +
1691679159.5042515-CDS-H-elongata_contig133537:1450..16001691679159.5042515-CDS-H-elongata_contig133537:1450..1600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133537 1451..1600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133537.2381.1prot_H-elongata_contig133537.2381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133537 1451..1600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133537.2381.1

>prot_H-elongata_contig133537.2381.1 ID=prot_H-elongata_contig133537.2381.1|Name=mRNA_H-elongata_contig133537.2381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MAEILEQSALLEGRSILVDGSMRDGDWYALHVAALRRRFPRLRVAIIHVS
back to top

mRNA from alignment at H-elongata_contig133537:1430..1600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133537.2381.1 ID=mRNA_H-elongata_contig133537.2381.1|Name=mRNA_H-elongata_contig133537.2381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig133537:1430..1600+ (Himanthalia elongata Himel1 dioecious)
ACCGTCCGTCAGGCCGGGCTGATGGCGGAGATCCTGGAACAGTCCGCGCT
GCTAGAGGGTAGAAGTATTCTCGTCGACGGTTCGATGAGGGATGGAGACT
GGTACGCTCTGCACGTGGCGGCCCTAAGGCGGCGCTTCCCGAGGCTGCGA
GTGGCGATCATCCATGTGAGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig133537:1430..1600+

>mRNA_H-elongata_contig133537.2381.1 ID=mRNA_H-elongata_contig133537.2381.1|Name=mRNA_H-elongata_contig133537.2381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig133537:1430..1600+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGATCCTGGAACAGTCCGCGCTGCTAGAGGGTAGAAGTATTCT
CGTCGACGGTTCGATGAGGGATGGAGACTGGTACGCTCTGCACGTGGCGG
CCCTAAGGCGGCGCTTCCCGAGGCTGCGAGTGGCGATCATCCATGTGAGC
ATGGCGGAGATCCTGGAACAGTCCGCGCTGCTAGAGGGTAGAAGTATTCT
CGTCGACGGTTCGATGAGGGATGGAGACTGGTACGCTCTGCACGTGGCGG
CCCTAAGGCGGCGCTTCCCGAGGCTGCGAGTGGCGATCATCCATGTGAGC
back to top