mRNA_H-elongata_contig133469.2376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133469.2376.1
Unique NamemRNA_H-elongata_contig133469.2376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133469.2376.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.910e-33
Identity = 62/77 (80.52%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 EQALHSLSLDRYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLNHLMQL 231
            ++ALH+LSLD Y VFIQNQECVRHV+AQG+ MEGHL++LLT+VHGLG+EFSVFQREAAEL+GGHKRNRQTL H MQL
Sbjct:   57 DEALHTLSLDHYRVFIQNQECVRHVRAQGKEMEGHLASLLTEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQL 133
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BLAST of mRNA_H-elongata_contig133469.2376.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.860e-19
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 EQALHSLSLDRYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEFSVFQREAAELIGGHKRNRQTLNHLMQL 231
            ++ALH LSLD+Y VFI NQ+CVRH++ +G  M  H+ AL   + GL   F+ FQ+EAAEL+ GH+RN+QTL H MQL
Sbjct:   27 DEALHDLSLDQYRVFIVNQDCVRHMKLKGADMAQHIRALEEGLEGLAGGFTTFQKEAAELLAGHRRNKQTLAHHMQL 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133469.2376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7C0_ECTSI1.910e-3380.52Conserved oligomeric Golgi complex subunit 8 n=2 T... [more]
A0A836CL87_9STRA3.860e-1955.84Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133469contigH-elongata_contig133469:15..257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D7G7C0
Preferred nameCOG8
KEGG koko:K20295
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2069@1,KOG2069@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.6651006-CDS-H-elongata_contig133469:14..2571622929791.6651006-CDS-H-elongata_contig133469:14..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133469 15..257 +
1691679159.1651213-CDS-H-elongata_contig133469:14..2571691679159.1651213-CDS-H-elongata_contig133469:14..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133469 15..257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133469.2376.1prot_H-elongata_contig133469.2376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133469 15..257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133469.2376.1

>prot_H-elongata_contig133469.2376.1 ID=prot_H-elongata_contig133469.2376.1|Name=mRNA_H-elongata_contig133469.2376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
EQALHSLSLDRYHVFIQNQECVRHVQAQGQAMEGHLSALLTDVHGLGSEF
SVFQREAAELIGGHKRNRQTLNHLMQLQDTP
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mRNA from alignment at H-elongata_contig133469:15..257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133469.2376.1 ID=mRNA_H-elongata_contig133469.2376.1|Name=mRNA_H-elongata_contig133469.2376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig133469:15..257+ (Himanthalia elongata Himel1 dioecious)
GAGCAGGCACTGCACTCTCTGAGCCTAGATCGCTACCACGTCTTCATACA
GAACCAGGAGTGCGTGCGGCACGTACAGGCCCAGGGCCAGGCGATGGAAG
GCCACCTGTCCGCCCTACTGACGGACGTGCACGGCCTCGGCTCCGAGTTT
TCCGTATTCCAGAGAGAGGCAGCAGAACTCATCGGGGGCCACAAGCGGAA
CAGGCAGACGCTGAATCACCTCATGCAGTTACAGGACACGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig133469:15..257+

>mRNA_H-elongata_contig133469.2376.1 ID=mRNA_H-elongata_contig133469.2376.1|Name=mRNA_H-elongata_contig133469.2376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig133469:15..257+ (Himanthalia elongata Himel1 dioecious)
GAGCAGGCACTGCACTCTCTGAGCCTAGATCGCTACCACGTCTTCATACA
GAACCAGGAGTGCGTGCGGCACGTACAGGCCCAGGGCCAGGCGATGGAAG
GCCACCTGTCCGCCCTACTGACGGACGTGCACGGCCTCGGCTCCGAGTTT
TCCGTATTCCAGAGAGAGGCAGCAGAACTCATCGGGGGCCACAAGCGGAA
CAGGCAGACGCTGAATCACCTCATGCAGTTACAGGACACGCCTGAGCAGG
CACTGCACTCTCTGAGCCTAGATCGCTACCACGTCTTCATACAGAACCAG
GAGTGCGTGCGGCACGTACAGGCCCAGGGCCAGGCGATGGAAGGCCACCT
GTCCGCCCTACTGACGGACGTGCACGGCCTCGGCTCCGAGTTTTCCGTAT
TCCAGAGAGAGGCAGCAGAACTCATCGGGGGCCACAAGCGGAACAGGCAG
ACGCTGAATCACCTCATGCAGTTACAGGACACGCCT
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