mRNA_H-elongata_contig133433.2375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133433.2375.1
Unique NamemRNA_H-elongata_contig133433.2375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: D7G5I6_ECTSI (RRP7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            QMRE+RREQLA LRSKFEQDKARVAKMKEQRKF+PF
Sbjct:  294 QMRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 329
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A835Z5W2_9STRA (Ribosomal RNA-processing protein 7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.860e-7
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            QMRE++REQLA LR KFEQDKA++ +MK  RKFKPF
Sbjct:  241 QMREAKREQLATLREKFEQDKAKIERMKAARKFKPF 276
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A4D9DEJ8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEJ8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.980e-6
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            QMRE++REQLA LR++FE+DKAR+ KMK  RKFKPF
Sbjct:  273 QMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 308
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A507FMC8_9FUNG (RRM domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMC8_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 4.820e-6
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            QMRES+R QLA LR KFE+DK R+ K+KE RKFKP+
Sbjct:  238 QMRESKRNQLAELRKKFEEDKKRIEKLKESRKFKPY 273
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A8J1U6Q3_OWEFU (Ofus.G101883 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U6Q3_OWEFU)

HSP 1 Score: 49.7 bits (117), Expect = 9.180e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            QMRES+RE LA LR KFE+DK R+A MK  RKFKP+
Sbjct:  241 QMRESKREHLATLRQKFEEDKQRIAMMKASRKFKPY 276
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: F6VJW8_CIOIN (RRP7 domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6VJW8_CIOIN)

HSP 1 Score: 45.8 bits (107), Expect = 1.400e-5
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   16 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            Q+RES+R+++A LR KFE+DK R+  MKE RKF+PF
Sbjct:    8 QVRESKRQKIAELREKFEEDKLRIQAMKEARKFRPF 43
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI0018D6CB67 (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6CB67)

HSP 1 Score: 48.9 bits (115), Expect = 1.710e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            T QMRES+RE +A LR KFE+DK ++A+MK  RKFKPF
Sbjct:  233 TFQMRESKREHIAELRKKFEEDKQKIAQMKAARKFKPF 270
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BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI00142565DF (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142565DF)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            T QMRES+RE +A LR KFE+DK R+A+MK  RKFKP+
Sbjct:  241 TFQMRESKREHIAELRKKFEEDKLRIAEMKAARKFKPY 278
[Close]
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI00145B5B9E (ribosomal RNA-processing protein 7 homolog A-like n=2 Tax=Acipenseroidei TaxID=186622 RepID=UPI00145B5B9E)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            T Q RES+RE +A LR KFE+DK R+A M+EQRKFKP+
Sbjct:  244 TWQHRESKREHIAELRKKFEEDKQRIAMMREQRKFKPY 281
[Close]
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A8B7YS03_ACAPL (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YS03_ACAPL)

HSP 1 Score: 48.9 bits (115), Expect = 1.820e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   10 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 123
            T QMRES+RE +A LR KFE+DK ++A+MK  RKFKPF
Sbjct:  292 TFQMRESKREHIAQLRQKFEEDKQKIAQMKAARKFKPF 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G5I6_ECTSI1.500e-1091.67RRP7 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5W2_9STRA9.860e-772.22Ribosomal RNA-processing protein 7-domain-containi... [more]
A0A4D9DEJ8_9STRA1.980e-672.22RRM domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A507FMC8_9FUNG4.820e-669.44RRM domain-containing protein n=1 Tax=Chytriomyces... [more]
A0A8J1U6Q3_OWEFU9.180e-669.44Ofus.G101883 protein n=1 Tax=Owenia fusiformis Tax... [more]
F6VJW8_CIOIN1.400e-561.11RRP7 domain-containing protein n=2 Tax=Ciona intes... [more]
UPI0018D6CB671.710e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
UPI00142565DF1.740e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
UPI00145B5B9E1.750e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
A0A8B7YS03_ACAPL1.820e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133433contigH-elongata_contig133433:318..443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue5.9e-08
Seed eggNOG ortholog2880.D7G5I6
Preferred nameRRP7A
KEGG rclassRC00002
KEGG koko:K10872,ko:K13024,ko:K14545
KEGG ReactionR05799,R08964
KEGG Pathwayko03008,ko04070,ko04113,map03008,map04070,map04113
GOsGO:0000028,GO:0001701,GO:0001824,GO:0001825,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032545,GO:0032991,GO:0034456,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0048646,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsKOG4008@1,KOG4008@2759
EC2.7.4.24
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.6135738-CDS-H-elongata_contig133433:317..4431622929791.6135738-CDS-H-elongata_contig133433:317..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133433 318..443 +
1691679159.1492598-CDS-H-elongata_contig133433:317..4431691679159.1492598-CDS-H-elongata_contig133433:317..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133433 318..443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133433.2375.1prot_H-elongata_contig133433.2375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133433 318..443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133433.2375.1

>prot_H-elongata_contig133433.2375.1 ID=prot_H-elongata_contig133433.2375.1|Name=mRNA_H-elongata_contig133433.2375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVATKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF*
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mRNA from alignment at H-elongata_contig133433:318..443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133433.2375.1 ID=mRNA_H-elongata_contig133433.2375.1|Name=mRNA_H-elongata_contig133433.2375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig133433:318..443+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCAACCAAACAGATGCGCGAATCGCGACGAGAGCAACTGGCTGT
TCTACGCTCCAAGTTCGAGCAGGACAAGGCGCGCGTCGCCAAGATGAAGG
AGCAGCGGAAGTTCAAGCCGTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig133433:318..443+

>mRNA_H-elongata_contig133433.2375.1 ID=mRNA_H-elongata_contig133433.2375.1|Name=mRNA_H-elongata_contig133433.2375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig133433:318..443+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCAACCAAACAGATGCGCGAATCGCGACGAGAGCAACTGGCTGT
TCTACGCTCCAAGTTCGAGCAGGACAAGGCGCGCGTCGCCAAGATGAAGG
AGCAGCGGAAGTTCAAGCCGTTTTAAATGGTGGCAACCAAACAGATGCGC
GAATCGCGACGAGAGCAACTGGCTGTTCTACGCTCCAAGTTCGAGCAGGA
CAAGGCGCGCGTCGCCAAGATGAAGGAGCAGCGGAAGTTCAAGCCGTTTT
AA
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