mRNA_H-elongata_contig13332.2368.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 333 bits (853), Expect = 1.220e-112 Identity = 164/229 (71.62%), Postives = 186/229 (81.22%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
+P A E P+ GE L+SEQLE VTAEVF ELGNMDQTPVQHEMPVET+LEK GAKDARI+TGGKEKER TLC+AV D KVPL IFKGTP PP++PGKGK TQPRK SIA E+ NR+K G+P GMSFGVQ+KSWCD REC LWI SW LRPNNGS++ Q P ILVLD+FKCH+D FIA+L+++ NT VI IPGGLTPLLQ LDRMLNK+MK+LLRG YT Y
Sbjct: 25 NPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 328 bits (840), Expect = 2.450e-108 Identity = 166/229 (72.49%), Postives = 184/229 (80.35%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
HP A DE P+ GE L+ EQL V AEVF+ELGNMDQTPVQHEMPVETTLEK GAKDARISTGGKEKER TL +AVMADG KV IIFKGTPF PP GKGK T PRK S+A E+ NR K HPA GMSFGVQ+KSW D REC WIS SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ +IA L++ NT VI+IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct: 87 HPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 328 bits (841), Expect = 7.610e-108 Identity = 166/229 (72.49%), Postives = 183/229 (79.91%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
HP A DE P+ GE L+SEQL V AEVF+ELGNMDQTPVQHE+PVETTLEK GAKDARISTGGKEKER TL +AVMADG KV IIFKGTPF PP GKGK T PRK S+A E+ NR K GHPA GMSFGVQ+KSW D REC WIS SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ FIA L++ NT VI IPG LTPLLQ LDRMLNK+MK+LLR KYTAY
Sbjct: 87 HPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 322 bits (824), Expect = 1.060e-105 Identity = 162/229 (70.74%), Postives = 181/229 (79.04%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
HP A DE P+ GE L+SEQL V AEVF++LGNMDQTPVQHEMPVETTLEK GAKDAR+STGG+EKER TL +AV ADG KV L IIF GTPF PP GKGK T PRK S+A E+ NR K GHPA GMSFGVQ+KSW D REC W S SW+LRPNNGSI+ Q P ILVLD+FKCH+D+ FIA L++ NT VI IPGGLTPLLQ LDRMLNK+ K+LLR KYTAY
Sbjct: 21 HPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 331 bits (848), Expect = 2.010e-102 Identity = 165/229 (72.05%), Postives = 183/229 (79.91%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
+P A E P+ GE LSS QLE VT E+F+ELGNMDQTPVQHEMPVETTLE GAKDARI+TGGKEKER TLC+AV ADG KVPL IIFKGTPF PP PGKGK TQPRK SIA EV NR+K G P GMSFGVQ+KSWCD REC LWI +SW+LRPNNGSI+ Q ILVLD+FKCH+D FIA L++ NT VI IPGGL PL Q LDRMLNK+MK+LLRG YTA+
Sbjct: 241 YPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 317 bits (811), Expect = 1.500e-101 Identity = 164/237 (69.20%), Postives = 179/237 (75.53%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRL--------RPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
HP A DE P+ GE L+SEQ V AEVF+ELGNMDQTPVQHEMPVETTLE G KDARISTGGKEKER TL +AVMADG V CIIFKGTPF PP GKGK T PRK S+A EV NR K GHPA GMSFGVQ+KSW +EC WI SW+L RPNNGSI+ Q P ILVLD+FKCH+D+ FIA L + NT VI IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct: 241 HPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 317 bits (813), Expect = 4.120e-101 Identity = 162/230 (70.43%), Postives = 181/230 (78.70%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGG-KEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
HP A DE P+ GE L+SEQL V AEVF+E+GNMDQ PVQHEMPVETTL+K GAKDARISTGG EKER TL +AV ADG KV IIF+GTPF PP GKGK T+PRK +A E+ NR K GHPA GMSFGVQ+KSW D REC WIS SW+LRPNNGSI+ Q P ILVLD+FKCH D+ FIA L++ NT VI IPGGLTPLLQ LDRMLNK+MK+LLRGKYTAY
Sbjct: 281 HPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 314 bits (805), Expect = 4.220e-101 Identity = 164/255 (64.31%), Postives = 186/255 (72.94%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTG--------------------------GKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
+P A E P+ GE LSS QLE VT E+F++LGNMDQTPVQ+EMPVETTLEK GAKDARI+TG GKEKER TLC+AV ADG+KVPL IIFKGTPF PP PGKGK TQPRK SIA EV NR+K G P GMSFGVQ+KSWCD RE LWI +SW+LRPNNGS++ Q ILVLD+FKCH+D FIA L++ NT VI IPGGLTPLLQ LDRMLNK+MK+LLRG YTA+
Sbjct: 174 YPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 325 bits (833), Expect = 1.900e-100 Identity = 160/224 (71.43%), Postives = 185/224 (82.59%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRG 743
+P AS E P+ G+ L+ QLE V A+VF+ELGNMDQTPVQ EMPVETTLEKRG KDARISTGGKEK+R T C+AVMADG KVP IIFKG PF PP+ G+ K TQ RKG IAAEV L NRTK G+P GM F VQ+KSWCDARECTLW+SESWR RPN+GS+I Q SILVLD+F+CHR ++F+ DLR+R NT+VILIPGGLTPLLQ LDRMLNK+MK+L+RG
Sbjct: 156 NPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 298 bits (763), Expect = 1.520e-94 Identity = 155/229 (67.69%), Postives = 176/229 (76.86%), Query Frame = 3
Query: 72 HPCASDELPVNGEKLSSEQLEWVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPLCIIFKGTPFNPPNKPGKGKRTQPRKGSIAAEVALGNRTKLGHPAVGMSFGVQKKSWCDARECTLWISESWRLRPNNGSIITQCPSILVLDNFKCHRDKAFIADLRKRCNTSVILIPGGLTPLLQSLDRMLNKKMKQLLRGKYTAY 758
+P AS E P+ G+ LS QLE V EVF+ELGNMDQTPVQ EMPVETTLEK GAKDARISTGGKEKER TLC+AVMADG KVPL IIFKG PF PP+ +GK TQPRKGSIAAEV N+T G+P GMSFGVQ++SW DA ECTLW+SESW RPN+GS+I Q SILVLD+F R NT+VILIPGGLTPLLQ LDRML+K+MK+L+R +YT Y
Sbjct: 260 NPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDF--------------RTNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13332.2368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13332.2368.1 >prot_H-elongata_contig13332.2368.1 ID=prot_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERITLCMAVMADGSKVPback to top mRNA from alignment at H-elongata_contig13332:2453..3395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13332.2368.1 ID=mRNA_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=943bp|location=Sequence derived from alignment at H-elongata_contig13332:2453..3395+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13332:2453..3395+ >mRNA_H-elongata_contig13332.2368.1 ID=mRNA_H-elongata_contig13332.2368.1|Name=mRNA_H-elongata_contig13332.2368.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig13332:2453..3395+ (Himanthalia elongata Himel1 dioecious)back to top |